Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_M22
(527 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1... 104 2e-22
sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1... 97 2e-20
sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precur... 89 9e-18
sp|Q8JGT9|CRVP_RHATT Tigrin precursor 87 3e-17
sp|Q8AVA4|CRVP_PSEAU Pseudechetoxin precursor (PsTx) 82 8e-16
sp|Q7ZZN9|CRVP_TRIJE Cysteine-rich venom protein precursor ... 82 1e-15
sp|Q8JI39|CRVP_TRIFL Triflin precursor 81 1e-15
sp|Q8JI40|CRVP_AGKHA Ablomin precursor 81 2e-15
sp|Q7T1K6|CRVP1_NAJAT Natrin-1 precursor (Cysteine-rich ven... 80 3e-15
sp|Q8AVA3|CRVP_PSEPO Pseudecin precursor 80 3e-15
>sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1 precursor (GliPR 1) (RTVP-1
protein)
Length = 266
Score = 104 bits (259), Expect = 2e-22
Identities = 47/91 (51%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = +3
Query: 9 WYDEYKDYTYEGKGCSAVCGHYTQVAWAKSYAVGCAAVNCKEKTG-GSFAYGWLFICNYG 185
WYDE +DY ++ + C VCGHYTQV WA SY VGCA C + +G + + G FICNYG
Sbjct: 117 WYDEIQDYDFKTRICKKVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYG 176
Query: 186 PAGNFNDEAPYEVGAACSKCPKGTSCKNNLC 278
P GN+ PY+ GA CS CP C +NLC
Sbjct: 177 PGGNY-PTWPYKRGATCSACPNNDKCLDNLC 206
>sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1 precursor (GliPR 1)
Length = 255
Score = 97.1 bits (240), Expect = 2e-20
Identities = 45/90 (50%), Positives = 53/90 (58%)
Frame = +3
Query: 9 WYDEYKDYTYEGKGCSAVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGP 188
WY+E K Y + + C VCGHYTQV WA SY +GCA C G FIC+YGP
Sbjct: 115 WYEEIKHYDFSTRKCRHVCGHYTQVVWADSYKLGCAVQLCPN--------GANFICDYGP 166
Query: 189 AGNFNDEAPYEVGAACSKCPKGTSCKNNLC 278
AGN+ PY+ GA CS CPK C N+LC
Sbjct: 167 AGNY-PTWPYKQGATCSDCPKDDKCLNSLC 195
>sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precursor (Stecrisp)
Length = 233
Score = 88.6 bits (218), Expect = 9e-18
Identities = 45/95 (47%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Frame = +3
Query: 9 WYDEYKDYTYEGKGC---SAVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICN 179
W+DEYKD+ Y G G +AV GHYTQ+ W KSY +GCAA C S Y + F+C
Sbjct: 105 WHDEYKDFKY-GVGADPPNAVTGHYTQIVWYKSYRIGCAAAYCP-----SSPYSYFFVCQ 158
Query: 180 YGPAGNF--NDEAPYEVGAACSKCPKGTSCKNNLC 278
Y PAGNF PY G C CP + C N LC
Sbjct: 159 YCPAGNFIGKTATPYTSGTPCGDCP--SDCDNGLC 191
>sp|Q8JGT9|CRVP_RHATT Tigrin precursor
Length = 237
Score = 86.7 bits (213), Expect = 3e-17
Identities = 43/97 (44%), Positives = 56/97 (57%), Gaps = 5/97 (5%)
Frame = +3
Query: 3 QGWYDEYKDYTYEGKGCS---AVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFI 173
Q WYDEY+++ Y G G + +V GHYTQ+ W KSY VGCAA C S Y + ++
Sbjct: 109 QDWYDEYRNFVY-GVGANPPDSVTGHYTQIVWYKSYLVGCAAAYCP-----SSLYNYFYV 162
Query: 174 CNYGPAGNF--NDEAPYEVGAACSKCPKGTSCKNNLC 278
C Y PAGN + PY G C+ CP ++C N LC
Sbjct: 163 CQYCPAGNIQGSTSTPYASGPTCADCP--SNCDNGLC 197
>sp|Q8AVA4|CRVP_PSEAU Pseudechetoxin precursor (PsTx)
Length = 238
Score = 82.0 bits (201), Expect = 8e-16
Identities = 40/96 (41%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Frame = +3
Query: 3 QGWYDEYKDYTYE--GKGCSAVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFIC 176
Q WYDE K++ Y K +V GHYTQV W KSY +GCA+ C +L++C
Sbjct: 110 QAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSYLIGCASAKCSSSK-------YLYVC 162
Query: 177 NYGPAGNFNDE--APYEVGAACSKCPKGTSCKNNLC 278
Y PAGN PY+ G C+ CP ++C N LC
Sbjct: 163 QYCPAGNIRGSIATPYKSGPPCADCP--SACVNKLC 196
>sp|Q7ZZN9|CRVP_TRIJE Cysteine-rich venom protein precursor (TJ-CRVP)
Length = 240
Score = 81.6 bits (200), Expect = 1e-15
Identities = 42/95 (44%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Frame = +3
Query: 9 WYDEYKDYTYEGKGC---SAVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICN 179
W+ EYKD+ Y G G AV GHYTQ+ W KSY +GCAA C S Y + ++C
Sbjct: 112 WHGEYKDFKY-GVGAVPSDAVVGHYTQIVWYKSYRIGCAAAYCP-----SAEYSYFYVCQ 165
Query: 180 YGPAGNF--NDEAPYEVGAACSKCPKGTSCKNNLC 278
Y PAGN PY G C CP + C N LC
Sbjct: 166 YCPAGNMIGKTATPYTSGPPCGDCP--SDCDNGLC 198
>sp|Q8JI39|CRVP_TRIFL Triflin precursor
Length = 240
Score = 81.3 bits (199), Expect = 1e-15
Identities = 42/95 (44%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Frame = +3
Query: 9 WYDEYKDYTYEGKGC---SAVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICN 179
W+ EYKD+ Y G G AV GHYTQ+ W KSY GCAA C S Y + ++C
Sbjct: 112 WHGEYKDFKY-GVGAVPSDAVIGHYTQIVWYKSYRAGCAAAYCP-----SSKYSYFYVCQ 165
Query: 180 YGPAGNF--NDEAPYEVGAACSKCPKGTSCKNNLC 278
Y PAGN PY+ G C CP + C N LC
Sbjct: 166 YCPAGNIIGKTATPYKSGPPCGDCP--SDCDNGLC 198
>sp|Q8JI40|CRVP_AGKHA Ablomin precursor
Length = 240
Score = 80.9 bits (198), Expect = 2e-15
Identities = 41/95 (43%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Frame = +3
Query: 9 WYDEYKDYTYEGKGC---SAVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICN 179
W+DEYK++ Y G G +AV GH+TQ+ W KSY GCAA C S Y + ++C
Sbjct: 112 WHDEYKNFKY-GIGADPPNAVSGHFTQIVWYKSYRAGCAAAYCP-----SSEYSYFYVCQ 165
Query: 180 YGPAGNFNDE--APYEVGAACSKCPKGTSCKNNLC 278
Y PAGN + PY G C CP ++C N LC
Sbjct: 166 YCPAGNMRGKTATPYTSGPPCGDCP--SACDNGLC 198
>sp|Q7T1K6|CRVP1_NAJAT Natrin-1 precursor (Cysteine-rich venom protein 1) (NA-CRVP1)
(Protein G2a)
Length = 239
Score = 80.1 bits (196), Expect = 3e-15
Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 5/95 (5%)
Frame = +3
Query: 9 WYDEYKDYTYEGKGCS---AVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICN 179
W+DEYK++ Y G G + +V GHYTQ+ W ++Y GCA C S A+ + ++C
Sbjct: 111 WHDEYKNFVY-GVGANPPGSVTGHYTQIVWYQTYRAGCAVSYCP-----SSAWSYFYVCQ 164
Query: 180 YGPAGNFNDE--APYEVGAACSKCPKGTSCKNNLC 278
Y P+GNF + PY++G C CP ++C N LC
Sbjct: 165 YCPSGNFQGKTATPYKLGPPCGDCP--SACDNGLC 197
>sp|Q8AVA3|CRVP_PSEPO Pseudecin precursor
Length = 238
Score = 80.1 bits (196), Expect = 3e-15
Identities = 39/96 (40%), Positives = 52/96 (54%), Gaps = 4/96 (4%)
Frame = +3
Query: 3 QGWYDEYKDYTYE--GKGCSAVCGHYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFIC 176
Q WYDE K++ Y K +V GHYTQV W KS+ +GCA+ C +L++C
Sbjct: 110 QAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGCASAKCSSSK-------YLYVC 162
Query: 177 NYGPAGNFNDE--APYEVGAACSKCPKGTSCKNNLC 278
Y PAGN PY+ G C+ CP ++C N LC
Sbjct: 163 QYCPAGNIRGSIATPYKSGPPCADCP--SACVNRLC 196
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,807,695
Number of Sequences: 369166
Number of extensions: 1117876
Number of successful extensions: 3317
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3197
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3551563800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)