Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_M03
(494 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q60445|COPE_CRIGR Coatomer epsilon subunit (Epsilon-coat... 144 9e-35
sp|O89079|COPE_MOUSE Coatomer epsilon subunit (Epsilon-coat... 144 1e-34
sp|Q28104|COPE_BOVIN Coatomer epsilon subunit (Epsilon-coat... 142 6e-34
sp|O14579|COPE_HUMAN Coatomer epsilon subunit (Epsilon-coat... 140 1e-33
sp|O64748|COPE_ARATH Probable coatomer epsilon subunit (Eps... 103 2e-22
sp|O62246|COPE_CAEEL Probable coatomer epsilon subunit (Eps... 97 2e-20
sp|O74767|COPE_SCHPO Probable coatomer epsilon subunit (Eps... 40 0.004
sp|O14607|UTY_HUMAN Ubiquitously transcribed Y chromosome t... 35 0.074
sp|Q7V4G0|YCF3_PROMM Photosystem I assembly protein ycf3 33 0.37
sp|O15550|UTX_HUMAN Ubiquitously transcribed X chromosome t... 32 0.63
>sp|Q60445|COPE_CRIGR Coatomer epsilon subunit (Epsilon-coat protein) (Epsilon-COP)
(LDLF)
Length = 308
Score = 144 bits (364), Expect = 9e-35
Identities = 71/138 (51%), Positives = 103/138 (74%)
Frame = +1
Query: 1 KMLETNEDDVLSQISLAMVNLSLGGDKLREAYNIYQELLEKYQAPTNMIKNGQAVALLGL 180
KM + +ED L+Q++ A VNL++GG+KL+EAY I+QEL +K +PT ++ NGQA
Sbjct: 171 KMQDQDEDATLTQLATAWVNLAVGGEKLQEAYYIFQELADKC-SPTLLLLNGQAACHSAQ 229
Query: 181 GKPDEAEPILQDAMDKNPNDPDTLVNMIVLSQMLGKPFEITNRFISQLKDSHPNHPFVKD 360
G+ + AE +LQ+A+DK+ P+TL+N+IVLSQ LGKP E+TNR++SQLKD+H HPF+K+
Sbjct: 230 GRWETAEGVLQEALDKDSGHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHRTHPFIKE 289
Query: 361 FVSKEAEFDRLMNNYGVS 414
+ +KE +FDRL Y S
Sbjct: 290 YQAKENDFDRLALQYAPS 307
>sp|O89079|COPE_MOUSE Coatomer epsilon subunit (Epsilon-coat protein) (Epsilon-COP)
Length = 308
Score = 144 bits (363), Expect = 1e-34
Identities = 71/138 (51%), Positives = 103/138 (74%)
Frame = +1
Query: 1 KMLETNEDDVLSQISLAMVNLSLGGDKLREAYNIYQELLEKYQAPTNMIKNGQAVALLGL 180
KM + +ED L+Q++ A VNL++GG+KL+EAY I+QEL +K +PT ++ NGQA
Sbjct: 171 KMQDQDEDATLTQLATAWVNLAVGGEKLQEAYYIFQELADKC-SPTLLLLNGQAACHSAQ 229
Query: 181 GKPDEAEPILQDAMDKNPNDPDTLVNMIVLSQMLGKPFEITNRFISQLKDSHPNHPFVKD 360
G+ + AE +LQ+A+DK+ P+TL+N+IVLSQ LGKP E+TNR++SQLKD+H HPF+K+
Sbjct: 230 GRWETAEGVLQEALDKDSGHPETLINLIVLSQHLGKPPEVTNRYLSQLKDAHRAHPFIKE 289
Query: 361 FVSKEAEFDRLMNNYGVS 414
+ +KE +FDRL Y S
Sbjct: 290 YQAKENDFDRLAMQYAPS 307
>sp|Q28104|COPE_BOVIN Coatomer epsilon subunit (Epsilon-coat protein) (Epsilon-COP)
Length = 308
Score = 142 bits (357), Expect = 6e-34
Identities = 67/138 (48%), Positives = 105/138 (76%)
Frame = +1
Query: 1 KMLETNEDDVLSQISLAMVNLSLGGDKLREAYNIYQELLEKYQAPTNMIKNGQAVALLGL 180
KM + +ED L+Q++ A V+L+ GG+KL++AY I+QE+ +K +PT ++ NGQA +
Sbjct: 171 KMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQ 229
Query: 181 GKPDEAEPILQDAMDKNPNDPDTLVNMIVLSQMLGKPFEITNRFISQLKDSHPNHPFVKD 360
G+ + AE +LQ+A+DK+ P+TL+N++VLSQ LGKP E+TNR++SQLKD+H +HPF+K+
Sbjct: 230 GRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 289
Query: 361 FVSKEAEFDRLMNNYGVS 414
+ +KE +FDRL+ Y S
Sbjct: 290 YRAKENDFDRLVLQYAPS 307
>sp|O14579|COPE_HUMAN Coatomer epsilon subunit (Epsilon-coat protein) (Epsilon-COP)
Length = 308
Score = 140 bits (354), Expect = 1e-33
Identities = 68/138 (49%), Positives = 105/138 (76%)
Frame = +1
Query: 1 KMLETNEDDVLSQISLAMVNLSLGGDKLREAYNIYQELLEKYQAPTNMIKNGQAVALLGL 180
+M + +ED L+Q++ A V+L+ GG+KL++AY I+QE+ +K +PT ++ NGQA +
Sbjct: 171 RMQDLDEDATLTQLATAWVSLATGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQ 229
Query: 181 GKPDEAEPILQDAMDKNPNDPDTLVNMIVLSQMLGKPFEITNRFISQLKDSHPNHPFVKD 360
G+ + AE +LQ+A+DK+ P+TLVN+IVLSQ LGKP E+TNR++SQLKD+H +HPF+K+
Sbjct: 230 GRWEAAEGLLQEALDKDSGYPETLVNLIVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 289
Query: 361 FVSKEAEFDRLMNNYGVS 414
+ +KE +FDRL+ Y S
Sbjct: 290 YQAKENDFDRLVLQYAPS 307
>sp|O64748|COPE_ARATH Probable coatomer epsilon subunit (Epsilon-coat protein)
(Epsilon-COP)
Length = 293
Score = 103 bits (258), Expect = 2e-22
Identities = 56/129 (43%), Positives = 86/129 (66%)
Frame = +1
Query: 4 MLETNEDDVLSQISLAMVNLSLGGDKLREAYNIYQELLEKYQAPTNMIKNGQAVALLGLG 183
M + +ED L+Q++ A +NL++GG K++EAY I+++ EKY T +I NG+AV + +G
Sbjct: 163 MQQIDEDHTLTQLASAWLNLAVGGSKIQEAYLIFEDFSEKYPM-TCLILNGKAVCCMQMG 221
Query: 184 KPDEAEPILQDAMDKNPNDPDTLVNMIVLSQMLGKPFEITNRFISQLKDSHPNHPFVKDF 363
DEAE +L +A++K+ DP+TL N++V S +GK ++R +SQLK SHP H VK
Sbjct: 222 NFDEAETLLLEALNKDAKDPETLANLVVCSLHVGKS---SSRHLSQLKLSHPEHILVKRV 278
Query: 364 VSKEAEFDR 390
S E F+R
Sbjct: 279 SSAEDNFER 287
>sp|O62246|COPE_CAEEL Probable coatomer epsilon subunit (Epsilon-coat protein)
(Epsilon-COP)
Length = 292
Score = 97.4 bits (241), Expect = 2e-20
Identities = 53/134 (39%), Positives = 83/134 (61%)
Frame = +1
Query: 1 KMLETNEDDVLSQISLAMVNLSLGGDKLREAYNIYQELLEKYQAPTNMIKNGQAVALLGL 180
KM + +ED LSQ++ A+V K+++A IY E+ +KY T++ + V++L
Sbjct: 157 KMNQIDEDATLSQLANALVTSFGASGKVKDALYIYSEMSDKYGRTTDLEMHQAVVSILTQ 216
Query: 181 GKPDEAEPILQDAMDKNPNDPDTLVNMIVLSQMLGKPFEITNRFISQLKDSHPNHPFVKD 360
AE +L+ A++++ D D L+N IV +Q+ K ++ RFISQLK HPNHP+V D
Sbjct: 217 DYA-AAEELLESALERDNKDADVLINSIVSAQLNEKDDDVVERFISQLKHEHPNHPWVID 275
Query: 361 FVSKEAEFDRLMNN 402
F KEAEFDR+ ++
Sbjct: 276 FNEKEAEFDRVASD 289
>sp|O74767|COPE_SCHPO Probable coatomer epsilon subunit (Epsilon-coat protein)
(Epsilon-COP)
Length = 288
Score = 39.7 bits (91), Expect = 0.004
Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 1/94 (1%)
Frame = +1
Query: 7 LETNEDDVLSQISLAMVNLSLGG-DKLREAYNIYQELLEKYQAPTNMIKNGQAVALLGLG 183
L+ +++++ Q++ + + + GG + +A+ +++EL P M G A A + L
Sbjct: 153 LDWADEEIVLQLAQSWIKIVSGGVESYNDAFYVFEELNGTDSNP--MTLTGMACADICLL 210
Query: 184 KPDEAEPILQDAMDKNPNDPDTLVNMIVLSQMLG 285
+P+EA L+ A+D PN + L NM LG
Sbjct: 211 RPEEALSSLKTALDSQPNYEEALSNMTTAITDLG 244
>sp|O14607|UTY_HUMAN Ubiquitously transcribed Y chromosome tetratricopeptide repeat
protein (Ubiquitously transcribed TPR protein on the Y
chromosome)
Length = 1347
Score = 35.4 bits (80), Expect = 0.074
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 5/108 (4%)
Frame = +1
Query: 28 VLSQISLAMVNLSLGGDKLREAYNIYQELLEKYQAPTNMIKNGQAVALLG-----LGKPD 192
VL Q+ N+ L GDK + Q L + +A N +GQ+ LG +GK
Sbjct: 242 VLQQLGWMHHNMDLVGDKATKESYAIQYLQKSLEADPN---SGQSWYFLGRCYSSIGKVQ 298
Query: 193 EAEPILQDAMDKNPNDPDTLVNMIVLSQMLGKPFEITNRFISQLKDSH 336
+A + ++DK+ DT ++ VL Q +P + +I ++ H
Sbjct: 299 DAFISYRQSIDKSEASADTWCSIGVLYQQQNQPMDALQAYICAVQLDH 346
>sp|Q7V4G0|YCF3_PROMM Photosystem I assembly protein ycf3
Length = 173
Score = 33.1 bits (74), Expect = 0.37
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +1
Query: 88 EAYNIYQELLEKYQAP---TNMIKNGQAVALLGLGKPDEAEPILQDAMDKNPNDPDTLVN 258
EA Y+E L+ ++P + +KN A+ + G D A Q A+D+N N P L N
Sbjct: 53 EALENYEESLKLEESPFDRSETLKN-MAIIYMSNGDEDLALDTYQRALDQNSNQPSCLKN 111
Query: 259 MIVLSQMLGK 288
M ++ + G+
Sbjct: 112 MGLIYEKRGR 121
>sp|O15550|UTX_HUMAN Ubiquitously transcribed X chromosome tetratricopeptide repeat
protein (Ubiquitously transcribed TPR protein on the X
chromosome)
Length = 1401
Score = 32.3 bits (72), Expect = 0.63
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Frame = +1
Query: 28 VLSQISLAMVNLSLGGDKLREAYNIYQELLEKYQAPTNMIKNGQAVALLG-----LGKPD 192
VL Q+ + L GDK + Q L + +A N +GQ+ LG +GK
Sbjct: 245 VLQQLGWMHHTVDLLGDKATKESYAIQYLQKSLEADPN---SGQSWYFLGRCYSSIGKVQ 301
Query: 193 EAEPILQDAMDKNPNDPDTLVNMIVLSQMLGKPFEITNRFISQLKDSH 336
+A + ++DK+ DT ++ VL Q +P + +I ++ H
Sbjct: 302 DAFISYRQSIDKSEASADTWCSIGVLYQQQNQPMDALQAYICAVQLDH 349
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.314 0.134 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,777,478
Number of Sequences: 369166
Number of extensions: 1148203
Number of successful extensions: 2236
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2228
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3069744620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)