Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_L17
(328 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alph... 195 3e-50
sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alp... 194 4e-50
sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alp... 194 4e-50
sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alp... 194 4e-50
sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic fo... 194 7e-50
sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha) 192 2e-49
sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha) 192 3e-49
sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)... 192 3e-49
sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha)... 191 3e-49
sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha) 189 1e-48
>sp|Q90835|EF1A_CHICK Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor Tu)
(EF-Tu)
Length = 462
Score = 195 bits (495), Expect = 3e-50
Identities = 88/108 (81%), Positives = 101/108 (93%)
Frame = +3
Query: 3 VLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKK 182
VL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI K
Sbjct: 113 VLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVK 172
Query: 183 EVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 326
EV +Y+KK+GY PD VAFVPISGWNGDNM+E S+NMPW+KGW++TRK+
Sbjct: 173 EVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSSNMPWFKGWKVTRKD 220
>sp|P10126|EF1A1_MOUSE Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62630|EF1A1_RAT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P62629|EF1A1_CRIGR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 194 bits (494), Expect = 4e-50
Identities = 88/108 (81%), Positives = 100/108 (92%)
Frame = +3
Query: 3 VLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKK 182
VL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI K
Sbjct: 113 VLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVK 172
Query: 183 EVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 326
EV +Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW++TRK+
Sbjct: 173 EVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD 220
>sp|P68105|EF1A1_RABIT Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q5R1X2|EF1A1_PANTR Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68103|EF1A1_BOVIN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|P68104|EF1A1_HUMAN Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
sp|Q66RN5|EF1A1_FELCA Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 194 bits (494), Expect = 4e-50
Identities = 88/108 (81%), Positives = 100/108 (92%)
Frame = +3
Query: 3 VLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKK 182
VL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI K
Sbjct: 113 VLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVK 172
Query: 183 EVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 326
EV +Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW++TRK+
Sbjct: 173 EVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD 220
>sp|Q5R4R8|EF1A1_PONPY Elongation factor 1-alpha 1 (EF-1-alpha-1) (Elongation factor 1
A-1) (eEF1A-1) (Elongation factor Tu) (EF-Tu)
Length = 462
Score = 194 bits (494), Expect = 4e-50
Identities = 88/108 (81%), Positives = 100/108 (92%)
Frame = +3
Query: 3 VLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKK 182
VL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPP+S KR+EEI K
Sbjct: 113 VLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPYSQKRYEEIVK 172
Query: 183 EVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRKN 326
EV +Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW++TRK+
Sbjct: 173 EVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSANMPWFKGWKVTRKD 220
>sp|P13549|EF1A0_XENLA Elongation factor 1-alpha, somatic form (EF-1-alpha-S)
Length = 462
Score = 194 bits (492), Expect = 7e-50
Identities = 88/107 (82%), Positives = 99/107 (92%)
Frame = +3
Query: 3 VLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKK 182
VL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVG+NKMDSTEPP+S KR+EEI K
Sbjct: 113 VLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGINKMDSTEPPYSQKRYEEIVK 172
Query: 183 EVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 323
EV +Y+KK+GY PD VAFVPISGWNGDNM+E S NMPW+KGW+ITRK
Sbjct: 173 EVSTYIKKIGYNPDTVAFVPISGWNGDNMLEPSPNMPWFKGWKITRK 219
>sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 192 bits (488), Expect = 2e-49
Identities = 88/107 (82%), Positives = 100/107 (93%)
Frame = +3
Query: 3 VLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKK 182
VL+VAAGTGEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDSTEPP+S+ RFEEIKK
Sbjct: 113 VLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKK 172
Query: 183 EVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 323
EV SY+KK+GY P AVAFVPISGW+GDNM+E ST MPW+KGW++ RK
Sbjct: 173 EVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERK 219
>sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 192 bits (487), Expect = 3e-49
Identities = 88/107 (82%), Positives = 99/107 (92%)
Frame = +3
Query: 3 VLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKK 182
VL+VAAGTGEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDSTEPP+S+ RFEEIKK
Sbjct: 99 VLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKK 158
Query: 183 EVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 323
EV SY+KK+GY P AVAFVPISGW+GDNM+E ST MPW+KGW + RK
Sbjct: 159 EVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERK 205
>sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)
sp|P84315|EF1A_HELVI Elongation factor 1-alpha (EF-1-alpha)
sp|P84318|EF1A_HELGL Elongation factor 1-alpha (EF-1-alpha)
sp|P84320|EF1A_HELDI Elongation factor 1-alpha (EF-1-alpha)
sp|P84317|EF1A_HELAM Elongation factor 1-alpha (EF-1-alpha)
sp|P84319|EF1A_HELAL Elongation factor 1-alpha (EF-1-alpha)
sp|P84322|EF1A_ANIIF Elongation factor 1-alpha (EF-1-alpha)
sp|P84321|EF1A_ADIBE Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 192 bits (487), Expect = 3e-49
Identities = 88/107 (82%), Positives = 99/107 (92%)
Frame = +3
Query: 3 VLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKK 182
VL+VAAGTGEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDSTEPP+S+ RFEEIKK
Sbjct: 99 VLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSESRFEEIKK 158
Query: 183 EVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 323
EV SY+KK+GY P AVAFVPISGW+GDNM+E ST MPW+KGW + RK
Sbjct: 159 EVSSYIKKIGYNPAAVAFVPISGWHGDNMLEASTKMPWFKGWNVERK 205
>sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha) (50 kDa female-specific
protein)
Length = 463
Score = 191 bits (486), Expect = 3e-49
Identities = 87/107 (81%), Positives = 101/107 (94%)
Frame = +3
Query: 3 VLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKK 182
VL+VAAGTGEFEAGISKNGQTREHALLA+TLGVKQ+IVGVNKMDS+EPP+S+ R+EEIKK
Sbjct: 113 VLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSSEPPYSEARYEEIKK 172
Query: 183 EVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 323
EV SY+KK+GY P AVAFVPISGW+GDNM+E STNMPW+KGW++ RK
Sbjct: 173 EVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTNMPWFKGWKVERK 219
>sp|P02993|EF1A_ARTSA Elongation factor 1-alpha (EF-1-alpha)
Length = 462
Score = 189 bits (481), Expect = 1e-48
Identities = 88/107 (82%), Positives = 97/107 (90%)
Frame = +3
Query: 3 VLVVAAGTGEFEAGISKNGQTREHALLAYTLGVKQMIVGVNKMDSTEPPFSDKRFEEIKK 182
VL+VAAG GEFEAGISKNGQTREHALLAYTLGVKQ+IVGVNKMDSTEPPFS+ RFEEIKK
Sbjct: 113 VLIVAAGVGEFEAGISKNGQTREHALLAYTLGVKQLIVGVNKMDSTEPPFSEARFEEIKK 172
Query: 183 EVGSYLKKVGYQPDAVAFVPISGWNGDNMIEESTNMPWYKGWEITRK 323
EV +Y+KK+GY P AVAFVPISGW+GDNM+E S +PWYKGW I RK
Sbjct: 173 EVSAYIKKIGYNPAAVAFVPISGWHGDNMLEASDRLPWYKGWNIERK 219
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,457,951
Number of Sequences: 369166
Number of extensions: 697516
Number of successful extensions: 2754
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2658
length of database: 68,354,980
effective HSP length: 77
effective length of database: 54,130,385
effective search space used: 1678041935
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)