Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_L15
(872 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5R8Y6|TM9S2_PONPY Transmembrane 9 superfamily protein m... 285 9e-77
sp|Q99805|TM9S2_HUMAN Transmembrane 9 superfamily protein m... 284 2e-76
sp|P58021|TM9S2_MOUSE Transmembrane 9 superfamily protein m... 283 6e-76
sp|Q66HG5|TM9S2_RAT Transmembrane 9 superfamily protein mem... 281 1e-75
sp|Q92544|TM9S4_HUMAN Transmembrane 9 superfamily protein m... 162 1e-39
sp|P32802|EMP70_YEAST Endosomal P24A protein precursor (70 ... 139 8e-33
sp|Q9HD45|TM9S3_HUMAN Transmembrane 9 superfamily protein m... 94 5e-19
sp|Q9ET30|TM9S3_MOUSE Transmembrane 9 superfamily protein m... 94 6e-19
sp|Q9DBU0|TM9S1_MOUSE Transmembrane 9 superfamily protein m... 84 4e-16
sp|O15321|TM9S1_HUMAN Transmembrane 9 superfamily protein m... 84 7e-16
>sp|Q5R8Y6|TM9S2_PONPY Transmembrane 9 superfamily protein member 2 precursor
Length = 663
Score = 285 bits (730), Expect = 9e-77
Identities = 146/293 (49%), Positives = 199/293 (67%), Gaps = 6/293 (2%)
Frame = +3
Query: 12 NLGQILFGERIQNSPYKIEFGKDLSYKEVCQKKYSKNDAS-QSKLKFLMSGIMLNYRHHW 188
NLGQ+LFGERI+ SPYK F K+ + K VC K Y A + KL+FL ++LNY+HHW
Sbjct: 95 NLGQVLFGERIEPSPYKFTFNKEETCKLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHW 154
Query: 189 IVDDLPVVSCYK-SGSNEVCYNGFPIGCYQSDKAKSV-MCTTDASQNIPNTYFLFNHISL 362
IVD++PV CY C GFPIGCY +DK + C ++ + +T+++FNH+
Sbjct: 155 IVDNMPVTWCYDVEDGQRFCNPGFPIGCYITDKGHAKDACVINSEFHERDTFYIFNHVD- 213
Query: 363 TIGIYTDEINEKLSKGRIVYVRVNTASKAFVKEGATDKELANAPPMIL--KGNEDTVIRY 536
I IY + R+V ++ S K DK + PPM + K + + I Y
Sbjct: 214 -IKIYYHVVETGSMGARLVAAKLEPKS---FKHTHIDKPDCSGPPMDISNKASGEIKIAY 269
Query: 537 TYSVKFEPTNEIKWSSRWDHVLKTMPQSNIQWFSILNSVIIVLFLSGMLAMILLKTLHRD 716
TYSV FE +I+W+SRWD++L++MP ++IQWFSI+NS++IVLFLSGM+AMI+L+TLH+D
Sbjct: 270 TYSVSFEEDKKIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKD 329
Query: 717 IDRYNKLD-TEEAQEEFGWKLVHGDVFRPPRMGMTLCVFVGSGVQLILMTIVT 872
I RYN++D TE+AQEEFGWKLVHGD+FRPPR GM L VF+GSG Q+++MT VT
Sbjct: 330 IARYNQMDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVT 382
>sp|Q99805|TM9S2_HUMAN Transmembrane 9 superfamily protein member 2 precursor (p76)
Length = 663
Score = 284 bits (727), Expect = 2e-76
Identities = 146/293 (49%), Positives = 198/293 (67%), Gaps = 6/293 (2%)
Frame = +3
Query: 12 NLGQILFGERIQNSPYKIEFGKDLSYKEVCQKKYSKNDAS-QSKLKFLMSGIMLNYRHHW 188
NLGQ+LFGERI+ SPYK F K + K VC K Y A + KL+FL ++LNY+HHW
Sbjct: 95 NLGQVLFGERIEPSPYKFTFNKKETCKLVCTKTYHTEKAEDKQKLEFLKKSMLLNYQHHW 154
Query: 189 IVDDLPVVSCYK-SGSNEVCYNGFPIGCYQSDKAKSV-MCTTDASQNIPNTYFLFNHISL 362
IVD++PV CY C GFPIGCY +DK + C + + +T+++FNH+
Sbjct: 155 IVDNMPVTWCYDVEDGQRFCNPGFPIGCYITDKGHAKDACVISSDFHERDTFYIFNHVD- 213
Query: 363 TIGIYTDEINEKLSKGRIVYVRVNTASKAFVKEGATDKELANAPPMIL--KGNEDTVIRY 536
I IY + R+V ++ S K DK + PPM + K + + I Y
Sbjct: 214 -IKIYYHVVETGSMGARLVAAKLEPKS---FKHTHIDKPDCSGPPMDISNKASGEIKIAY 269
Query: 537 TYSVKFEPTNEIKWSSRWDHVLKTMPQSNIQWFSILNSVIIVLFLSGMLAMILLKTLHRD 716
TYSV FE ++I+W+SRWD++L++MP ++IQWFSI+NS++IVLFLSGM+AMI+L+TLH+D
Sbjct: 270 TYSVSFEEDDKIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKD 329
Query: 717 IDRYNKLD-TEEAQEEFGWKLVHGDVFRPPRMGMTLCVFVGSGVQLILMTIVT 872
I RYN++D TE+AQEEFGWKLVHGD+FRPPR GM L VF+GSG Q+++MT VT
Sbjct: 330 IARYNQMDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVT 382
>sp|P58021|TM9S2_MOUSE Transmembrane 9 superfamily protein member 2 precursor
Length = 662
Score = 283 bits (723), Expect = 6e-76
Identities = 145/293 (49%), Positives = 198/293 (67%), Gaps = 6/293 (2%)
Frame = +3
Query: 12 NLGQILFGERIQNSPYKIEFGKDLSYKEVCQKKYSKNDAS-QSKLKFLMSGIMLNYRHHW 188
NLGQ+LFGERI+ SPYK F K + K VC K Y+ A + KL FL ++LNY+HHW
Sbjct: 94 NLGQVLFGERIEPSPYKFTFNKKETCKLVCTKTYNTEKAEDKQKLDFLKKSMLLNYQHHW 153
Query: 189 IVDDLPVVSCYK-SGSNEVCYNGFPIGCYQSDKAKSV-MCTTDASQNIPNTYFLFNHISL 362
IVD++PV CY+ S + C GFPIGCY +DK + C + + +T+++FNH+
Sbjct: 154 IVDNMPVTWCYEVEDSQKFCNPGFPIGCYITDKGHAKDACVISSEFHERDTFYIFNHVD- 212
Query: 363 TIGIYTDEINEKLSKGRIVYVRVNTASKAFVKEGATDKELANAPPMIL--KGNEDTVIRY 536
I IY + R+V ++ S K DK + P M + K + + I Y
Sbjct: 213 -IKIYYHVVETGSMGARLVAAKLEPKS---FKHTHIDKPDCSGPAMDISNKASGEIKIAY 268
Query: 537 TYSVKFEPTNEIKWSSRWDHVLKTMPQSNIQWFSILNSVIIVLFLSGMLAMILLKTLHRD 716
TYS+ FE I+W+SRWD++L++MP ++IQWFSI+NS++IVLFLSGM+AMI+L+TLH+D
Sbjct: 269 TYSISFEEEKNIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKD 328
Query: 717 IDRYNKLD-TEEAQEEFGWKLVHGDVFRPPRMGMTLCVFVGSGVQLILMTIVT 872
I RYN++D TE+AQEEFGWKLVHGD+FRPPR GM L VF+GSG Q+++MT VT
Sbjct: 329 IARYNQMDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVT 381
>sp|Q66HG5|TM9S2_RAT Transmembrane 9 superfamily protein member 2 precursor
Length = 663
Score = 281 bits (720), Expect = 1e-75
Identities = 143/293 (48%), Positives = 198/293 (67%), Gaps = 6/293 (2%)
Frame = +3
Query: 12 NLGQILFGERIQNSPYKIEFGKDLSYKEVCQKKYSKNDAS-QSKLKFLMSGIMLNYRHHW 188
NLGQ+LFGERI+ SPYK F K+ + K VC K Y A + KL FL ++LNY+HHW
Sbjct: 95 NLGQVLFGERIEPSPYKFTFNKEETCKLVCTKTYHTEKAEDKQKLDFLKKSMLLNYQHHW 154
Query: 189 IVDDLPVVSCYKSGSNE-VCYNGFPIGCYQSDKAKSV-MCTTDASQNIPNTYFLFNHISL 362
IVD++PV CY+ N+ C GFPIGCY +DK + C + + +T+++FNH+ +
Sbjct: 155 IVDNMPVTWCYEVEDNQKFCNPGFPIGCYITDKGHAKDACVISSEFHERDTFYIFNHVDI 214
Query: 363 TIGIYTDEINEKLSKGRIVYVRVNTASKAFVKEGATDKELANAPPMIL--KGNEDTVIRY 536
I + E R+V ++ S + DK + P M + K + + I Y
Sbjct: 215 KIQYHVVETGSM--GARLVAAKLEPKS---FRHTHIDKPDCSGPAMDISNKASGEIKIAY 269
Query: 537 TYSVKFEPTNEIKWSSRWDHVLKTMPQSNIQWFSILNSVIIVLFLSGMLAMILLKTLHRD 716
TYS+ FE I+W+SRWD++L++MP ++IQWFSI+NS++IVLFLSGM+AMI+L+TLH+D
Sbjct: 270 TYSISFEEEKNIRWASRWDYILESMPHTHIQWFSIMNSLVIVLFLSGMVAMIMLRTLHKD 329
Query: 717 IDRYNKLD-TEEAQEEFGWKLVHGDVFRPPRMGMTLCVFVGSGVQLILMTIVT 872
I RYN++D TE+AQEEFGWKLVHGD+FRPPR GM L VF+GSG Q+++MT VT
Sbjct: 330 IARYNQMDSTEDAQEEFGWKLVHGDIFRPPRKGMLLSVFLGSGTQILIMTFVT 382
>sp|Q92544|TM9S4_HUMAN Transmembrane 9 superfamily protein member 4
Length = 625
Score = 162 bits (410), Expect = 1e-39
Identities = 103/298 (34%), Positives = 157/298 (52%), Gaps = 12/298 (4%)
Frame = +3
Query: 12 NLGQILFGERIQNSPYKIEFGKDLSYKEVCQKKYSKNDASQSKLKFLMSGIMLNYRHHWI 191
NLG++L G+RI N+P+++ + + +C + + + + + I +Y H I
Sbjct: 58 NLGEVLRGDRIVNTPFQVLMNSEKKCEVLCSQSNKPVTLTVEQSRLVAERITEDYYVHLI 117
Query: 192 VDDLPVVSCYKSGSNEVCYNGFPIGCYQSDKAKSVMCTTDASQNIP----NTYFLFNHIS 359
D+LPV + + SN DK K + + N +L NH+S
Sbjct: 118 ADNLPVATRLELYSNRD----------SDDKKKEKDVQFEHGYRLGFTDVNKIYLHNHLS 167
Query: 360 LTIGIYTDEINEKLSKG-RIVYVRVNTAS------KAFVKEGATDKELANAPPMILKGNE 518
+ + +++ E R+V V S KA K T E N+ P + +
Sbjct: 168 FILYYHREDMEEDQEHTYRVVRFEVIPQSIRLEDLKADEKSSCTLPEGTNSSPQEIDPTK 227
Query: 519 DTVIRYTYSVKFEPTNEIKWSSRWDHVLKTMPQSNIQWFSILNSVIIVLFLSGMLAMILL 698
+ + +TYSV +E + +IKW+SRWD L TM I WFSI+NSV++V FLSG+L+MI++
Sbjct: 228 ENQLYFTYSVHWEES-DIKWASRWDTYL-TMSDVQIHWFSIINSVVVVFFLSGILSMIII 285
Query: 699 KTLHRDIDRYNKL-DTEEAQEEFGWKLVHGDVFRPPRMGMTLCVFVGSGVQLILMTIV 869
+TL +DI YNK D E+ EE GWKLVHGDVFRPP+ M L +GSG+QL M ++
Sbjct: 286 RTLRKDIANYNKEDDIEDTMEESGWKLVHGDVFRPPQYPMILSSLLGSGIQLFCMILI 343
>sp|P32802|EMP70_YEAST Endosomal P24A protein precursor (70 kDa endomembrane protein)
(Pheromone alpha-factor transporter) (Acidic 24 kDa late
endocytic intermediate component)
Length = 667
Score = 139 bits (351), Expect = 8e-33
Identities = 97/303 (32%), Positives = 151/303 (49%), Gaps = 20/303 (6%)
Frame = +3
Query: 12 NLGQILFGERIQNSPYKIEFGKDLSYKEVCQKKYSKNDASQSKLKFLMSGIMLNYRHHWI 191
+LG ++FG+RI NSP+++ ++ + +C+ +DA KF+ I + +W+
Sbjct: 94 SLGSVIFGDRIYNSPFQLNMLQEKECESLCKTVIPGDDA-----KFINKLIKNGFFQNWL 148
Query: 192 VDDLPVVSCYKSGSNEVCYNG--FPIGCYQSDKAKSVMCT--------------TDASQN 323
+D LP G + + G F +G Q + + T T +N
Sbjct: 149 IDGLPAAREVYDGRTKTSFYGAGFNLGFVQVTQGTDIEATPKGAETTDKDVELETRNDRN 208
Query: 324 IPNTY---FLFNHISLTIGIYTDEINEKLSKGRIVYVRVNTASKAFVKEGATDKELANAP 494
+ TY + NH + I + + R+V V V S G E +P
Sbjct: 209 MVKTYELPYFANHFDIMIEYH----DRGEGNYRVVGVIVEPVSIKRSSPGTC--ETTGSP 262
Query: 495 PMILKGNEDTVIRYTYSVKFEPTNEIKWSSRWDHVLKTMPQSNIQWFSILNSVIIVLFLS 674
M+ +GN++ V +TYSVKF + W++RWD L S IQWFS++N ++V+ LS
Sbjct: 263 LMLDEGNDNEVY-FTYSVKFNES-ATSWATRWDKYLHVYDPS-IQWFSLINFSLVVVLLS 319
Query: 675 GMLAMILLKTLHRDIDRYNKLDTEEA-QEEFGWKLVHGDVFRPPRMGMTLCVFVGSGVQL 851
++ LL+ L D RYN+L+ ++ QE+ GWKL HGDVFR P +TL + VGSGVQL
Sbjct: 320 SVVIHSLLRALKSDFARYNELNLDDDFQEDSGWKLNHGDVFRSPSQSLTLSILVGSGVQL 379
Query: 852 ILM 860
LM
Sbjct: 380 FLM 382
>sp|Q9HD45|TM9S3_HUMAN Transmembrane 9 superfamily protein member 3 precursor (SM-11044
binding protein) (EP70-P-iso)
Length = 589
Score = 94.0 bits (232), Expect = 5e-19
Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 8/287 (2%)
Frame = +3
Query: 33 GERIQNSPYKIEF-GKDLSYKE-VCQKKYSKNDASQSKLKFLMSGIMLNYRHHWIVDDLP 206
GE +Q ++EF G D+ +K+ V Y + D + K + I +Y + +DDLP
Sbjct: 81 GEALQG--VELEFSGLDIKFKDDVMPATYCEIDLDKEKRDAFVYAIKNHYWYQMYIDDLP 138
Query: 207 VVSCYKSGSNEVCYNGFPIGCYQSDKAKSVMCTTDASQNIPNTYFLFNHISLTIGIYTDE 386
+ E NG Y+L+ + L IG +
Sbjct: 139 IWGIV----GEADENG-------------------------EDYYLWTYKKLEIGFNGNR 169
Query: 387 INEKLSKGRIVYVRVNTASKAFVKEGATDKELANAPPMILKGNEDTVIRYTYSVKFEPTN 566
I V VN S+ VK L N T I+ +YSVK++ +
Sbjct: 170 I-----------VDVNLTSEGKVK---------------LVPN--TKIQMSYSVKWKKS- 200
Query: 567 EIKWSSRWDHVLK-TMPQSNIQWFSILNSVIIVLFLSGMLAMILLKTLHRDIDRYNKLD- 740
++K+ R+D L + Q I WFSI NS ++V+FL G+++MIL++TL +D RY+K +
Sbjct: 201 DVKFEDRFDKYLDPSFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKEEE 260
Query: 741 ----TEEAQEEFGWKLVHGDVFRPPRMGMTLCVFVGSGVQLILMTIV 869
+ +E+GWK VHGDVFRP + +GSG Q+ ++++
Sbjct: 261 MDDMDRDLGDEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFAVSLI 307
>sp|Q9ET30|TM9S3_MOUSE Transmembrane 9 superfamily protein member 3 precursor
Length = 587
Score = 93.6 bits (231), Expect = 6e-19
Identities = 82/287 (28%), Positives = 131/287 (45%), Gaps = 8/287 (2%)
Frame = +3
Query: 33 GERIQNSPYKIEF-GKDLSYKE-VCQKKYSKNDASQSKLKFLMSGIMLNYRHHWIVDDLP 206
GE +Q ++EF G D+ +K+ V Y + D + K + I +Y + +DDLP
Sbjct: 79 GEALQG--VELEFSGLDIKFKDDVMPGTYCEIDLDKEKRDAFVYAIKNHYWYQMYIDDLP 136
Query: 207 VVSCYKSGSNEVCYNGFPIGCYQSDKAKSVMCTTDASQNIPNTYFLFNHISLTIGIYTDE 386
+ E NG Y+L+ + L IG +
Sbjct: 137 IWGIV----GEADENG-------------------------EDYYLWTYKKLEIGFNGNR 167
Query: 387 INEKLSKGRIVYVRVNTASKAFVKEGATDKELANAPPMILKGNEDTVIRYTYSVKFEPTN 566
I V VN S+ VK L N T I+ +YSVK++ +
Sbjct: 168 I-----------VDVNLTSEGKVK---------------LVPN--TKIQMSYSVKWKKS- 198
Query: 567 EIKWSSRWDHVLK-TMPQSNIQWFSILNSVIIVLFLSGMLAMILLKTLHRDIDRYNKLD- 740
++K+ R+D L + Q I WFSI NS ++V+FL G+++MIL++TL +D RY+K +
Sbjct: 199 DVKFEDRFDKYLDPSFFQHRIHWFSIFNSFMMVIFLVGLVSMILMRTLRKDYARYSKEEE 258
Query: 741 ----TEEAQEEFGWKLVHGDVFRPPRMGMTLCVFVGSGVQLILMTIV 869
+ +E+GWK VHGDVFRP + +GSG Q+ ++++
Sbjct: 259 MDDMDRDLGDEYGWKQVHGDVFRPSSHPLIFSSLIGSGCQIFAVSLI 305
>sp|Q9DBU0|TM9S1_MOUSE Transmembrane 9 superfamily protein member 1 precursor
Length = 606
Score = 84.3 bits (207), Expect = 4e-16
Identities = 81/297 (27%), Positives = 137/297 (46%), Gaps = 14/297 (4%)
Frame = +3
Query: 12 NLGQILFGERIQNSPYKIEFGKDLSYKEVCQKKYSKNDASQSKLKFLMSGIMLNYRHHWI 191
+LG++L G+R+ S Y+I F +++ + +C + S Q L I Y ++
Sbjct: 78 SLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQ-----LRQAIEELYYFEFV 132
Query: 192 VDDLPVVSCYKSGSNEVCYNGFPIGCYQSDKAKSVMCTTDASQNIPNTYF--LFNHISLT 365
VDDLP+ GF +G + S +P+++ L+ H+
Sbjct: 133 VDDLPI-------------RGF-VGYMEE------------SGFLPHSHKIGLWTHLDFH 166
Query: 366 IGIYTDEINEKLSKGRIVYVRVNTASKAFVKEGATDKELANAPPMILKGNEDTVIRYTYS 545
+ + D RI++ V+ VK + D L+ +E + +TYS
Sbjct: 167 LEFHGD---------RIIFANVSVRD---VKPHSLDG---------LRSDELLGLTHTYS 205
Query: 546 VKFEPTN-EIKWSSRWDHVLKTMPQS-NIQWFSILNSVIIVLFLSGMLAMILLKTLHRDI 719
V++ T+ E + R P++ I W SI+NS+++V L G +A+IL++ L D+
Sbjct: 206 VRWSETSVEHRSDRRRGDDGGFFPRTLEIHWLSIINSMVLVFLLVGFVAVILMRVLRNDL 265
Query: 720 DRYNKLDTEEA---------QEEFGWKLVHGDVFR-PPRMGMTLCVFVGSGVQLILM 860
RYN LD E + Q + GWK++H DVFR PP G+ LC +G G Q + +
Sbjct: 266 ARYN-LDEETSSGGSSDDFDQGDNGWKIIHTDVFRFPPYRGL-LCAVLGVGAQFLAL 320
>sp|O15321|TM9S1_HUMAN Transmembrane 9 superfamily protein member 1 precursor (hMP70)
Length = 606
Score = 83.6 bits (205), Expect = 7e-16
Identities = 81/300 (27%), Positives = 136/300 (45%), Gaps = 17/300 (5%)
Frame = +3
Query: 12 NLGQILFGERIQNSPYKIEFGKDLSYKEVCQKKYSKNDASQSKLKFLMSGIMLNYRHHWI 191
+LG++L G+R+ S Y+I F +++ + +C + S Q L I Y ++
Sbjct: 78 SLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQ-----LRQAIEELYYFEFV 132
Query: 192 VDDLPVVSCYKSGSNEVCYNGFPIGCYQSDKAKSVMCTTDASQNIPNTYF--LFNHISLT 365
VDDLP+ GF +G + S +P+++ L+ H+
Sbjct: 133 VDDLPI-------------RGF-VGYMEE------------SGFLPHSHKIGLWTHLDFH 166
Query: 366 IGIYTDEINEKLSKGRIVYVRVNTASKAFVKEGATDKELANAPPMILKGNEDTVIRYTYS 545
+ + D RI++ V+ VK + D L+ +E + +TYS
Sbjct: 167 LEFHGD---------RIIFANVSVRD---VKPHSLDG---------LRPDEFLGLTHTYS 205
Query: 546 VKFEPTNEIKWSSR-----WDHVLKTMPQSNIQWFSILNSVIIVLFLSGMLAMILLKTLH 710
V++ T+ + S R +T+ I W SI+NS+++V L G +A+IL++ L
Sbjct: 206 VRWSETSVERRSDRRRGDDGGFFPRTL---EIHWLSIINSMVLVFLLVGFVAVILMRVLR 262
Query: 711 RDIDRYNKLDTEEA---------QEEFGWKLVHGDVFR-PPRMGMTLCVFVGSGVQLILM 860
D+ RYN LD E Q + GWK++H DVFR PP G+ LC +G G Q + +
Sbjct: 263 NDLARYN-LDEETTSAGSGDDFDQGDNGWKIIHTDVFRFPPYRGL-LCAVLGVGAQFLAL 320
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,353,890
Number of Sequences: 369166
Number of extensions: 1989469
Number of successful extensions: 5300
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5264
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8646143400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)