Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_L14
(412 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05344|SSRP_DROME Single-strand recognition protein (SSR... 50 2e-06
sp|Q06943|HMGZ_DROME High mobility group protein Z (HMG-Z) 49 3e-06
sp|Q24537|HMG2_DROME High mobility group protein DSP1 (Dors... 48 7e-06
sp|P07746|HMGT_ONCMY High mobility group-T protein (HMG-T) ... 48 7e-06
sp|P41848|SSRP_CAEEL Probable structure-specific recognitio... 47 1e-05
sp|P30681|HMG2_MOUSE High mobility group protein 2 (HMG-2) 46 3e-05
sp|P52925|HMG2_RAT High mobility group protein 2 (HMG-2) 46 3e-05
sp|P17741|HMG2_PIG High mobility group protein 2 (HMG-2) 46 3e-05
sp|P26583|HMG2_HUMAN High mobility group protein 2 (HMG-2) 46 3e-05
sp|P10103|HMG1_BOVIN High mobility group protein 1 (HMG-1) ... 45 4e-05
>sp|Q05344|SSRP_DROME Single-strand recognition protein (SSRP) (Chorion-factor 5)
Length = 723
Score = 50.1 bits (118), Expect = 2e-06
Identities = 21/41 (51%), Positives = 31/41 (75%)
Frame = +1
Query: 1 KVGDVAKVLGKMWEACKDKSKYEEQAKRDKERYNKEIEEYK 123
KV ++AK G+MW+ KDKSK+E+ A +DK+RY+ E+ YK
Sbjct: 581 KVTEIAKKGGEMWKELKDKSKWEDAAAKDKQRYHDEMRNYK 621
>sp|Q06943|HMGZ_DROME High mobility group protein Z (HMG-Z)
Length = 111
Score = 49.3 bits (116), Expect = 3e-06
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Frame = +1
Query: 1 KVGDVAKVLGKMWEACKDKSKYEEQAKRDKERYNKEIEEYKSG----VPVPKKAKSA 159
KV D+AK G++W KDK+++E++A + KE YNK ++EY++ PKK K A
Sbjct: 32 KVTDIAKRGGELWRGLKDKTEWEQKAIKMKEEYNKAVKEYEANGGTDSGAPKKRKKA 88
>sp|Q24537|HMG2_DROME High mobility group protein DSP1 (Dorsal switch protein 1)
Length = 393
Score = 48.1 bits (113), Expect = 7e-06
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 4 VGDVAKVLGKMWEACKD--KSKYEEQAKRDKERYNKEIEEYKSGVPVPKKAKS 156
VGD+AK LG+ W K KYE A+RDK RY +E+ EYK+ + A S
Sbjct: 298 VGDIAKELGRKWSDVDPEVKQKYESMAERDKARYEREMTEYKTSGKIAMSAPS 350
Score = 31.6 bits (70), Expect = 0.64
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 49 KDKSKYEEQAKRDKERYNKEIEEYKSGVPVPKKAKSAG 162
K+K ++ E A++DK+RY E++ Y VP K G
Sbjct: 225 KEKKRFHEMAEKDKQRYEAEMQNY-----VPPKGAVVG 257
>sp|P07746|HMGT_ONCMY High mobility group-T protein (HMG-T) (HMG-T1) (HMG-1)
Length = 204
Score = 48.1 bits (113), Expect = 7e-06
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 4/56 (7%)
Frame = +1
Query: 4 VGDVAKVLGKMWE--ACKDKSKYEEQAKRDKERYNKEIEEY--KSGVPVPKKAKSA 159
+GDVAK LG+ W +DK YE++A R KE+Y K+I Y K VPV AK+A
Sbjct: 121 IGDVAKKLGEKWNNLTAEDKVPYEKKASRLKEKYEKDITAYRNKGKVPVSMPAKAA 176
Score = 32.3 bits (72), Expect = 0.38
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = +1
Query: 10 DVAKVLGKMWE--ACKDKSKYEEQAKRDKERYNKEIEEY 120
+ +K + W+ + K+K K+E+ AK DK RY +E+ Y
Sbjct: 39 EFSKKCSERWKTMSAKEKGKFEDLAKLDKVRYEREMRSY 77
>sp|P41848|SSRP_CAEEL Probable structure-specific recognition protein 1 (SSRP1)
(Recombination signal sequence recognition protein)
Length = 697
Score = 47.4 bits (111), Expect = 1e-05
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +1
Query: 4 VGDVAKVLGKMWEACK--DKSKYEEQAKRDKERYNKEIEEYKSGVPVPKKAKSAGDQVN 174
V DVAK G W+ DK K+EE+A+ DK RY KE++EY+ P +K + + +
Sbjct: 581 VADVAKKGGAKWKTMSSDDKKKWEEKAEEDKSRYEKEMKEYRKNGPPSSSSKPSSSKTS 639
>sp|P30681|HMG2_MOUSE High mobility group protein 2 (HMG-2)
Length = 210
Score = 46.2 bits (108), Expect = 3e-05
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Frame = +1
Query: 4 VGDVAKVLGKMW--EACKDKSKYEEQAKRDKERYNKEIEEYKS 126
+GD AK LG+MW ++ KDK YE++A + KE+Y K+I Y++
Sbjct: 122 IGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRA 164
Score = 37.7 bits (86), Expect = 0.009
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +1
Query: 10 DVAKVLGKMWE--ACKDKSKYEEQAKRDKERYNKEIEEYKSGVPVPKKAKSAGDQVNGN 180
+ +K + W+ + K+KSK+E+ AK DK RY++E++ Y VP K G + + N
Sbjct: 40 EFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNY-----VPPKGDKKGKKKDPN 93
>sp|P52925|HMG2_RAT High mobility group protein 2 (HMG-2)
Length = 210
Score = 46.2 bits (108), Expect = 3e-05
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Frame = +1
Query: 4 VGDVAKVLGKMW--EACKDKSKYEEQAKRDKERYNKEIEEYKS 126
+GD AK LG+MW ++ KDK YE++A + KE+Y K+I Y++
Sbjct: 122 IGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRA 164
Score = 37.7 bits (86), Expect = 0.009
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +1
Query: 10 DVAKVLGKMWE--ACKDKSKYEEQAKRDKERYNKEIEEYKSGVPVPKKAKSAGDQVNGN 180
+ +K + W+ + K+KSK+E+ AK DK RY++E++ Y VP K G + + N
Sbjct: 40 EFSKKCSERWKTMSAKEKSKFEDLAKSDKARYDREMKNY-----VPPKGDKKGKKKDPN 93
>sp|P17741|HMG2_PIG High mobility group protein 2 (HMG-2)
Length = 210
Score = 46.2 bits (108), Expect = 3e-05
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Frame = +1
Query: 4 VGDVAKVLGKMW--EACKDKSKYEEQAKRDKERYNKEIEEYKS 126
+GD AK LG+MW ++ KDK YE++A + KE+Y K+I Y++
Sbjct: 122 IGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRA 164
Score = 38.5 bits (88), Expect = 0.005
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +1
Query: 10 DVAKVLGKMWE--ACKDKSKYEEQAKRDKERYNKEIEEYKSGVPVPKKAKSAGDQVNGN 180
+ +K + W+ + K+KSK+E+ AK DK RY++E++ Y VP K G + + N
Sbjct: 40 EFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY-----VPPKGDKKGKKKDPN 93
>sp|P26583|HMG2_HUMAN High mobility group protein 2 (HMG-2)
Length = 209
Score = 46.2 bits (108), Expect = 3e-05
Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Frame = +1
Query: 4 VGDVAKVLGKMW--EACKDKSKYEEQAKRDKERYNKEIEEYKS 126
+GD AK LG+MW ++ KDK YE++A + KE+Y K+I Y++
Sbjct: 122 IGDTAKKLGEMWSEQSAKDKQPYEQKAAKLKEKYEKDIAAYRA 164
Score = 38.5 bits (88), Expect = 0.005
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Frame = +1
Query: 10 DVAKVLGKMWE--ACKDKSKYEEQAKRDKERYNKEIEEYKSGVPVPKKAKSAGDQVNGN 180
+ +K + W+ + K+KSK+E+ AK DK RY++E++ Y VP K G + + N
Sbjct: 40 EFSKKCSERWKTMSAKEKSKFEDMAKSDKARYDREMKNY-----VPPKGDKKGKKKDPN 93
>sp|P10103|HMG1_BOVIN High mobility group protein 1 (HMG-1) (High mobility group protein
B1)
Length = 215
Score = 45.4 bits (106), Expect = 4e-05
Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Frame = +1
Query: 4 VGDVAKVLGKMWE--ACKDKSKYEEQAKRDKERYNKEIEEYKS 126
+GDVAK LG+MW A DK YE++A + KE+Y K+I Y++
Sbjct: 122 IGDVAKKLGEMWNNTAADDKQPYEKKAAKLKEKYEKDIAAYRA 164
Score = 33.9 bits (76), Expect = 0.13
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +1
Query: 10 DVAKVLGKMWE--ACKDKSKYEEQAKRDKERYNKEIEEY 120
+ +K + W+ + K+K K+E+ AK DK RY +E++ Y
Sbjct: 40 EFSKKCSERWKTMSAKEKGKFEDMAKADKARYEREMKTY 78
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,782,525
Number of Sequences: 369166
Number of extensions: 582825
Number of successful extensions: 2761
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2731
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)