Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_L13
(521 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q26481|RL5_STYCL 60S ribosomal protein L5 159 5e-39
sp|O76190|RL5_BOMMO 60S ribosomal protein L5 155 7e-38
sp|P49405|RL5_CAEEL 60S ribosomal protein L5 141 8e-34
sp|O65353|RL5_HELAN 60S ribosomal protein L5 139 3e-33
sp|P15125|RL5A_XENLA 60S ribosomal protein L5-A 139 4e-33
sp|P22451|RL5_CHICK 60S ribosomal protein L5 139 5e-33
sp|P15126|RL5B_XENLA 60S ribosomal protein L5-B 138 9e-33
sp|P46777|RL5_HUMAN 60S ribosomal protein L5 137 1e-32
sp|P09895|RL5_RAT 60S ribosomal protein L5 137 1e-32
sp|P47962|RL5_MOUSE 60S ribosomal protein L5 137 1e-32
>sp|Q26481|RL5_STYCL 60S ribosomal protein L5
Length = 295
Score = 159 bits (401), Expect = 5e-39
Identities = 84/165 (50%), Positives = 110/165 (66%), Gaps = 2/165 (1%)
Frame = +3
Query: 3 IDEERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADI 182
+D + F A LD GL RT+TGA VFGAMKGA DGGL+IPHS KRFPGY E ++A++
Sbjct: 135 VDGKPGAFRAFLDVGLARTTTGAKVFGAMKGAADGGLDIPHSTKRFPGYDDESGDFSAEV 194
Query: 183 HKDRIFGKHVGEFMSVL-EENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPA 359
H+ IFG HV +M L EE+E F RQFS+YI+ G++ + +EE H AIREDP+P
Sbjct: 195 HRSHIFGGHVSNYMKELEEEDEEAFKRQFSQYIKHGVTADTVEEMYTKAHAAIREDPTPK 254
Query: 360 KTEKTPYTG-PKITLKKKMNLLQKRDRIRQIKDTYLAKLRAENQE 491
K KT + G K +KKM Q+RDR++Q K ++ LRA+ QE
Sbjct: 255 K--KTDFAGKTKRWNRKKMTFSQRRDRVKQKKASF---LRAKQQE 294
>sp|O76190|RL5_BOMMO 60S ribosomal protein L5
Length = 299
Score = 155 bits (391), Expect = 7e-38
Identities = 80/162 (49%), Positives = 107/162 (66%), Gaps = 2/162 (1%)
Frame = +3
Query: 3 IDEERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADI 182
+D F LD GL RT+TG VFGAMKGAVDGGLN+PHS KRFPGY E K+NA++
Sbjct: 135 VDNGPGAFRCYLDVGLARTTTGRRVFGAMKGAVDGGLNVPHSIKRFPGYDAESKKFNAEV 194
Query: 183 HKDRIFGKHVGEFMSVLE-ENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPA 359
H+ IFG HV E+M LE ++E F RQFSKYI+ G++ + IE HEAIR DPS
Sbjct: 195 HRAHIFGLHVAEYMRSLEQDDEDSFKRQFSKYIKLGVTADAIEAIYKKAHEAIRADPSHK 254
Query: 360 KTE-KTPYTGPKITLKKKMNLLQKRDRIRQIKDTYLAKLRAE 482
K E K K K+K+ L ++++RI+Q K +++ +L+A+
Sbjct: 255 KKELKKDSVKQKRWNKRKLTLAERKNRIKQKKASFIKRLQAQ 296
>sp|P49405|RL5_CAEEL 60S ribosomal protein L5
Length = 293
Score = 141 bits (356), Expect = 8e-34
Identities = 69/154 (44%), Positives = 102/154 (66%), Gaps = 6/154 (3%)
Frame = +3
Query: 12 ERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKD 191
+R PF AVLD GL RT+TG+ +F MKG DGG+N+PHSE RF G+ +E +YNA+ H+D
Sbjct: 137 DRAPFKAVLDIGLARTTTGSKIFAVMKGVADGGINVPHSESRFFGFDQESKEYNAEAHRD 196
Query: 192 RIFGKHVGEFMSVL-EENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTE 368
RI GKHV ++M+ L EE+E + RQFSK++ AG++ +N+ T VH AIR D SPA +
Sbjct: 197 RILGKHVADYMTYLKEEDEDRYKRQFSKFLAAGLNADNLVATYQKVHSAIRADASPAAKK 256
Query: 369 KTP----YTGPKITL-KKKMNLLQKRDRIRQIKD 455
+T ++T ++K + K+ + Q+K+
Sbjct: 257 AAKPSKRHTAKRLTYDERKQRVADKKALLLQLKE 290
>sp|O65353|RL5_HELAN 60S ribosomal protein L5
Length = 297
Score = 139 bits (351), Expect = 3e-33
Identities = 72/157 (45%), Positives = 101/157 (64%), Gaps = 1/157 (0%)
Frame = +3
Query: 24 FTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADIHKDRIFG 203
F LD GL+RT+TGA VFGAMKGAVDGGLNI HS KRFPG+ E ++NAD+H+ IFG
Sbjct: 142 FRCYLDVGLMRTTTGARVFGAMKGAVDGGLNILHSTKRFPGFDSESKEFNADVHRQHIFG 201
Query: 204 KHVGEFMSVL-EENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPAKTEKTPY 380
+HV E+M L EE++ + RQFS+YI+ G++ + IE HEAIR +P+ K +
Sbjct: 202 QHVAEYMRQLAEEDDEAYKRQFSQYIKLGLNADAIEGLYKKAHEAIRANPARKTVAKKAH 261
Query: 381 TGPKITLKKKMNLLQKRDRIRQIKDTYLAKLRAENQE 491
+ T +KK+ Q++ ++ K +L K+ A E
Sbjct: 262 PKKRWT-EKKLTREQRQGKVAAAKAEWLKKIEAGEVE 297
>sp|P15125|RL5A_XENLA 60S ribosomal protein L5-A
Length = 296
Score = 139 bits (350), Expect = 4e-33
Identities = 71/155 (45%), Positives = 101/155 (65%), Gaps = 1/155 (0%)
Frame = +3
Query: 3 IDEERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADI 182
ID E FT LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++N ++
Sbjct: 135 IDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEV 194
Query: 183 HKDRIFGKHVGEFMSVL-EENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPA 359
H+ IF ++V E+M +L EE+E + +QFS+YI+ G++ + +E+ H IRE+P
Sbjct: 195 HRKHIFAQNVAEYMRLLMEEDEDAYKKQFSQYIKNGVTADQVEDLYKKAHAGIRENPVHE 254
Query: 360 KTEKTPYTGPKITLKKKMNLLQKRDRIRQIKDTYL 464
K K K + K++L QK+DR+ Q K ++L
Sbjct: 255 KKPKKE-VKKKRWNRAKLSLEQKKDRVAQKKASFL 288
>sp|P22451|RL5_CHICK 60S ribosomal protein L5
Length = 297
Score = 139 bits (349), Expect = 5e-33
Identities = 69/155 (44%), Positives = 102/155 (65%), Gaps = 1/155 (0%)
Frame = +3
Query: 3 IDEERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADI 182
+D + FT LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++NA++
Sbjct: 135 VDGKPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEV 194
Query: 183 HKDRIFGKHVGEFMS-VLEENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPA 359
H+ I G++V ++M ++EE+E + +QFS+YI+ I+ + +EE H AIR++P
Sbjct: 195 HRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNITPDGMEEMYKKAHAAIRDNPVHE 254
Query: 360 KTEKTPYTGPKITLKKKMNLLQKRDRIRQIKDTYL 464
K K ++ KM+L QK+DR+ Q K ++L
Sbjct: 255 KKPKREVKKKRVN-STKMSLAQKKDRVAQKKASFL 288
>sp|P15126|RL5B_XENLA 60S ribosomal protein L5-B
Length = 296
Score = 138 bits (347), Expect = 9e-33
Identities = 69/155 (44%), Positives = 101/155 (65%), Gaps = 1/155 (0%)
Frame = +3
Query: 3 IDEERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADI 182
+D E FT LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++N ++
Sbjct: 135 VDGEPGAFTCYLDAGLTRTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNPEV 194
Query: 183 HKDRIFGKHVGEFMSVL-EENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPA 359
H+ IF +++ E+M +L EE+E + +QFS+YI+ G++ + +E+ H IRE+P
Sbjct: 195 HRKHIFAQNIAEYMRLLMEEDEDAYKKQFSQYIKNGVAADQLEDIYKKAHAGIRENPVHE 254
Query: 360 KTEKTPYTGPKITLKKKMNLLQKRDRIRQIKDTYL 464
K K K + K++L QK+DR+ Q K ++L
Sbjct: 255 KKPKKE-VKKKRWNRAKLSLEQKKDRVAQKKASFL 288
>sp|P46777|RL5_HUMAN 60S ribosomal protein L5
Length = 297
Score = 137 bits (346), Expect = 1e-32
Identities = 71/155 (45%), Positives = 102/155 (65%), Gaps = 1/155 (0%)
Frame = +3
Query: 3 IDEERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADI 182
ID + FT LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++NA++
Sbjct: 135 IDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEV 194
Query: 183 HKDRIFGKHVGEFMS-VLEENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPA 359
H+ I G++V ++M ++EE+E + +QFS+YI+ ++ + +EE H AIRE+P
Sbjct: 195 HRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYE 254
Query: 360 KTEKTPYTGPKITLKKKMNLLQKRDRIRQIKDTYL 464
K K K + KM+L QK+DR+ Q K ++L
Sbjct: 255 KKPKKE-VKKKRWNRPKMSLAQKKDRVAQKKASFL 288
>sp|P09895|RL5_RAT 60S ribosomal protein L5
Length = 297
Score = 137 bits (346), Expect = 1e-32
Identities = 71/155 (45%), Positives = 102/155 (65%), Gaps = 1/155 (0%)
Frame = +3
Query: 3 IDEERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADI 182
ID + FT LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++NA++
Sbjct: 135 IDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEV 194
Query: 183 HKDRIFGKHVGEFMS-VLEENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPA 359
H+ I G++V ++M ++EE+E + +QFS+YI+ ++ + +EE H AIRE+P
Sbjct: 195 HRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYE 254
Query: 360 KTEKTPYTGPKITLKKKMNLLQKRDRIRQIKDTYL 464
K K K + KM+L QK+DR+ Q K ++L
Sbjct: 255 KKPKRE-VKKKRWNRPKMSLAQKKDRVAQKKASFL 288
>sp|P47962|RL5_MOUSE 60S ribosomal protein L5
Length = 297
Score = 137 bits (346), Expect = 1e-32
Identities = 71/155 (45%), Positives = 102/155 (65%), Gaps = 1/155 (0%)
Frame = +3
Query: 3 IDEERRPFTAVLDTGLVRTSTGANVFGAMKGAVDGGLNIPHSEKRFPGYSKEGDKYNADI 182
ID + FT LD GL RT+TG VFGA+KGAVDGGL+IPHS KRFPGY E ++NA++
Sbjct: 135 IDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEV 194
Query: 183 HKDRIFGKHVGEFMS-VLEENEAMFNRQFSKYIEAGISGENIEETIAAVHEAIREDPSPA 359
H+ I G++V ++M ++EE+E + +QFS+YI+ ++ + +EE H AIRE+P
Sbjct: 195 HRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYE 254
Query: 360 KTEKTPYTGPKITLKKKMNLLQKRDRIRQIKDTYL 464
K K K + KM+L QK+DR+ Q K ++L
Sbjct: 255 KKPKRE-VKKKRWNRPKMSLAQKKDRVAQKKASFL 288
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,814,030
Number of Sequences: 369166
Number of extensions: 1151708
Number of successful extensions: 4282
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4233
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)