Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_L11
(893 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P80313|TCPH_MOUSE T-complex protein 1, eta subunit (TCP-... 383 e-106
sp|Q99832|TCPH_HUMAN T-complex protein 1, eta subunit (TCP-... 380 e-105
sp|Q5R5C8|TCPH_PONPY T-complex protein 1, eta subunit (TCP-... 380 e-105
sp|P54409|TCPH_TETPY T-complex protein 1, eta subunit (TCP-... 333 5e-91
sp|P87153|TCPH_SCHPO Probable T-complex protein 1, eta subu... 311 2e-84
sp|P42943|TCPH_YEAST T-complex protein 1, eta subunit (TCP-... 297 3e-80
sp|O77323|TCPH_PLAF7 T-complex protein 1, eta subunit (TCP-... 297 3e-80
sp|P54410|TCPH_TETTH T-complex protein 1, eta subunit (TCP-... 264 3e-70
sp|Q52500|THSB_PYRKO Thermosome beta subunit (Thermosome su... 182 1e-45
sp|O24730|THSB_THEK1 Thermosome beta subunit (Thermosome su... 182 1e-45
>sp|P80313|TCPH_MOUSE T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta)
Length = 544
Score = 383 bits (984), Expect = e-106
Identities = 197/289 (68%), Positives = 235/289 (81%)
Frame = +2
Query: 26 MLPGAQIVLLKEGTDTSQGIPQIMSNITAIQSIAEAVRTTLGPRGMDKLIIDEKSKATIS 205
M+P ++LLKEGTD+SQGIPQ++SNI+A Q IAEAVRTTLGPRGMDKLI+D + KATIS
Sbjct: 1 MMP-TPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATIS 59
Query: 206 NDGATILKLLDVVHPVASTVVQIALSQDDEVGDGTTSVMLLASEFLKQAKSFIEEGVHPE 385
NDGATILKLLDVVHP A T+V IA SQD EVGDGTTSV LLA+EFLKQ K ++EEG+HP+
Sbjct: 60 NDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQ 119
Query: 386 LIQXXXXXXXXXXXXXXXXXSVKIEKGNDAERRSLLEKCASTALSSKLVATYKEFFSKLV 565
+I +V ++K + E+R +LEKCA TALSSKL++ K FF+K+V
Sbjct: 120 IIIRAFRTATQLAVNKIKEIAVTVKKQDKVEQRKMLEKCAMTALSSKLISQQKVFFAKMV 179
Query: 566 VDAVSSLDHLLPLDMIGIKKVPGGSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISL 745
VDAV LD LL L MIGIKKV GG+L+ESQL+AGVAFKKTFSYAGFEMQPK YK PKI+L
Sbjct: 180 VDAVMMLDELLQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYKNPKIAL 239
Query: 746 LNIELELKSEKENAEIRVSSVEEYQRIVDAEWQILYDKLEAIYKSGAKI 892
LN+ELELK+EK+NAEIRV +VE+YQ IVDAEW ILYDKLE I++SGAK+
Sbjct: 240 LNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHQSGAKV 288
>sp|Q99832|TCPH_HUMAN T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta) (HIV-1 Nef
interacting protein)
Length = 543
Score = 380 bits (977), Expect = e-105
Identities = 196/289 (67%), Positives = 233/289 (80%)
Frame = +2
Query: 26 MLPGAQIVLLKEGTDTSQGIPQIMSNITAIQSIAEAVRTTLGPRGMDKLIIDEKSKATIS 205
M+P ++LLKEGTD+SQGIPQ++SNI+A Q IAEAVRTTLGPRGMDKLI+D + KATIS
Sbjct: 1 MMP-TPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATIS 59
Query: 206 NDGATILKLLDVVHPVASTVVQIALSQDDEVGDGTTSVMLLASEFLKQAKSFIEEGVHPE 385
NDGATILKLLDVVHP A T+V IA SQD EVGDGTTSV LLA+EFLKQ K ++EEG+HP+
Sbjct: 60 NDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQ 119
Query: 386 LIQXXXXXXXXXXXXXXXXXSVKIEKGNDAERRSLLEKCASTALSSKLVATYKEFFSKLV 565
+I +V ++K + E+R LLEKCA TALSSKL++ K FF+K+V
Sbjct: 120 IIIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMV 179
Query: 566 VDAVSSLDHLLPLDMIGIKKVPGGSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISL 745
VDAV LD LL L MIGIKKV GG+L++SQL+AGVAFKKTFSYAGFEMQPK Y PKI+L
Sbjct: 180 VDAVMMLDDLLQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKIAL 239
Query: 746 LNIELELKSEKENAEIRVSSVEEYQRIVDAEWQILYDKLEAIYKSGAKI 892
LN+ELELK+EK+NAEIRV +VE+YQ IVDAEW ILYDKLE I+ SGAK+
Sbjct: 240 LNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKV 288
>sp|Q5R5C8|TCPH_PONPY T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta)
Length = 543
Score = 380 bits (976), Expect = e-105
Identities = 195/289 (67%), Positives = 233/289 (80%)
Frame = +2
Query: 26 MLPGAQIVLLKEGTDTSQGIPQIMSNITAIQSIAEAVRTTLGPRGMDKLIIDEKSKATIS 205
M+P ++LLKEGTD+SQGIPQ++SNI+A Q IAEAVRTTLGPRGMDKLI+D + KATIS
Sbjct: 1 MMP-TPVILLKEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATIS 59
Query: 206 NDGATILKLLDVVHPVASTVVQIALSQDDEVGDGTTSVMLLASEFLKQAKSFIEEGVHPE 385
NDGATILKLLDVVHP A T+V IA SQD EVGDGTTSV LLA+EFLKQ K ++EEG+HP+
Sbjct: 60 NDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQ 119
Query: 386 LIQXXXXXXXXXXXXXXXXXSVKIEKGNDAERRSLLEKCASTALSSKLVATYKEFFSKLV 565
+I +V ++K + E+R LLEKCA TALSSKL++ K FF+K+V
Sbjct: 120 IIIRAFRTATQLAVNKIKEIAVTVKKADKVEQRKLLEKCAMTALSSKLISQQKAFFAKMV 179
Query: 566 VDAVSSLDHLLPLDMIGIKKVPGGSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISL 745
VDAV LD LL L MIGIKKV GG+L++SQL+AGVAFKKTFSYAGFEMQPK Y PK++L
Sbjct: 180 VDAVMMLDDLLQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYHNPKVAL 239
Query: 746 LNIELELKSEKENAEIRVSSVEEYQRIVDAEWQILYDKLEAIYKSGAKI 892
LN+ELELK+EK+NAEIRV +VE+YQ IVDAEW ILYDKLE I+ SGAK+
Sbjct: 240 LNVELELKAEKDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKV 288
>sp|P54409|TCPH_TETPY T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta)
Length = 558
Score = 333 bits (853), Expect = 5e-91
Identities = 173/284 (60%), Positives = 217/284 (76%), Gaps = 1/284 (0%)
Frame = +2
Query: 44 IVLLKEGTDTSQGIPQIMSNITAIQSIAEAVRTTLGPRGMDKLIIDEKSKATISNDGATI 223
I+LLK+GTDTSQG QI+SNI A+QSI E V+TTLGPRGMDKLI + ATISNDGATI
Sbjct: 6 ILLLKDGTDTSQGKAQIISNINAVQSIVEIVKTTLGPRGMDKLIEGNRG-ATISNDGATI 64
Query: 224 LKLLDVVHPVASTVVQIALSQDDEVGDGTTSVMLLASEFLKQAKSFIEEGVHPELIQXXX 403
L LLD+VHP A T+V IA +QDDEVGDGTTSV LLA E LK++K+FIEEG+HP+++
Sbjct: 65 LNLLDIVHPAAKTLVDIAKAQDDEVGDGTTSVCLLAGELLKESKNFIEEGMHPQIVTKGY 124
Query: 404 XXXXXXXXXXXXXXSVKIEKGNDAERRSLLEKCASTALSSKLVATYKEFFSKLVVDAVSS 583
S + +D E+R +L KCA T+L+SKL+A YKEFFS++VV AV +
Sbjct: 125 KEALKLALTFLQENSYSVADKSDGEKREMLLKCAQTSLNSKLLAHYKEFFSEMVVQAVET 184
Query: 584 LD-HLLPLDMIGIKKVPGGSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISLLNIEL 760
LD +LL D+IGIK V GGS+ +S L+ GVAFKKTFSYAGFE QPK + PKI LLNIEL
Sbjct: 185 LDTNLLDKDLIGIKMVTGGSVTDSVLVKGVAFKKTFSYAGFEQQPKKFANPKICLLNIEL 244
Query: 761 ELKSEKENAEIRVSSVEEYQRIVDAEWQILYDKLEAIYKSGAKI 892
ELK+EKENAEIR+ + ++Y+ IVDAEW+++Y+KL I +SGA+I
Sbjct: 245 ELKAEKENAEIRIDNPDDYKSIVDAEWELIYEKLRKIVESGAQI 288
>sp|P87153|TCPH_SCHPO Probable T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta)
Length = 558
Score = 311 bits (797), Expect = 2e-84
Identities = 155/288 (53%), Positives = 213/288 (73%), Gaps = 1/288 (0%)
Frame = +2
Query: 32 PGAQIVLLKEGTDTSQGIPQIMSNITAIQSIAEAVRTTLGPRGMDKLIIDEKSKATISND 211
P +++LKEGTD SQG Q++SNI A ++ + +RTTLGP G DKL++D++ + ISND
Sbjct: 6 PQIPVIVLKEGTDDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISND 65
Query: 212 GATILKLLDVVHPVASTVVQIALSQDDEVGDGTTSVMLLASEFLKQAKSFIEEGVHPELI 391
GATI+KLLD+VHP A T+V IA +QD EVGDGTTSV++ A E L++A++F+E+GV LI
Sbjct: 66 GATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLI 125
Query: 392 QXXXXXXXXXXXXXXXXXSVKIEKGNDAERRSLLEKCASTALSSKLVATYKEFFSKLVVD 571
++ ++ ++ + R LL KCASTA++SKL+ + FF+K+VVD
Sbjct: 126 IRGYRKAAQLAVNKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVD 185
Query: 572 AVSSLDHL-LPLDMIGIKKVPGGSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISLL 748
AV +LD L +MIGIKKVPGG++++S L+ GVAFKKTFSYAGFE QPK +K PKI L
Sbjct: 186 AVLTLDQEDLNENMIGIKKVPGGAMEDSLLVKGVAFKKTFSYAGFEQQPKFFKNPKILCL 245
Query: 749 NIELELKSEKENAEIRVSSVEEYQRIVDAEWQILYDKLEAIYKSGAKI 892
++ELELK+EK+NAE+RV V+EYQ IVDAEW+I++ KLEAI +GAK+
Sbjct: 246 DVELELKAEKDNAEVRVDKVQEYQNIVDAEWRIIFSKLEAIVATGAKV 293
>sp|P42943|TCPH_YEAST T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta)
Length = 550
Score = 297 bits (760), Expect = 3e-80
Identities = 159/284 (55%), Positives = 200/284 (70%), Gaps = 1/284 (0%)
Frame = +2
Query: 44 IVLLKEGTDTSQGIPQIMSNITAIQSIAEAVRTTLGPRGMDKLIIDEKSKATISNDGATI 223
IV+LKEGTD SQG QI+SNI A ++ EA++ TLGP G D LI+ K TISNDGATI
Sbjct: 10 IVVLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATI 69
Query: 224 LKLLDVVHPVASTVVQIALSQDDEVGDGTTSVMLLASEFLKQAKSFIEEGVHPELIQXXX 403
LKLLDVVHP A T+V I+ +QD EVGDGTTSV +LA E +K+AK F+EEG+ LI
Sbjct: 70 LKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGY 129
Query: 404 XXXXXXXXXXXXXXSVKIEKGNDAERRSLLEKCASTALSSKLVATYKEFFSKLVVDAVSS 583
+V I + R LLE+CA TA+SSKL+ +FF K+ VDAV S
Sbjct: 130 RKAVSLAVEKINELAVDI-TSEKSSGRELLERCARTAMSSKLIHNNADFFVKMCVDAVLS 188
Query: 584 LD-HLLPLDMIGIKKVPGGSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISLLNIEL 760
LD + L +IGIKK+PGG+++ES I GVAFKKTFSYAGFE QPK + PKI LN+EL
Sbjct: 189 LDRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILSLNVEL 248
Query: 761 ELKSEKENAEIRVSSVEEYQRIVDAEWQILYDKLEAIYKSGAKI 892
ELK+EK+NAE+RV VE+YQ IVDAEWQ++++KL + ++GA I
Sbjct: 249 ELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANI 292
>sp|O77323|TCPH_PLAF7 T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta)
Length = 539
Score = 297 bits (760), Expect = 3e-80
Identities = 158/283 (55%), Positives = 196/283 (69%)
Frame = +2
Query: 44 IVLLKEGTDTSQGIPQIMSNITAIQSIAEAVRTTLGPRGMDKLIIDEKSKATISNDGATI 223
IVLLKEGTDT+QG QI+ NI A Q I + V+TTLGPRGMDKLI E+ TI+NDGAT+
Sbjct: 9 IVLLKEGTDTAQGRSQIIRNINACQIIVDIVKTTLGPRGMDKLIYTERD-VTITNDGATV 67
Query: 224 LKLLDVVHPVASTVVQIALSQDDEVGDGTTSVMLLASEFLKQAKSFIEEGVHPELIQXXX 403
+ LL++ HP AS +V IA SQDDEVGDGTTSV+++A E L +AK + +G+ P +I
Sbjct: 68 MNLLNISHPAASILVDIAKSQDDEVGDGTTSVVVVAGELLNEAKGLLNDGIEPNMIIDGF 127
Query: 404 XXXXXXXXXXXXXXSVKIEKGNDAERRSLLEKCASTALSSKLVATYKEFFSKLVVDAVSS 583
S+ N+ E+RS+L KCA TAL+SKLV+ +KEFF +LVV+AV
Sbjct: 128 RNACNVAINKLNELSLNFSNKNEEEKRSILLKCAQTALNSKLVSNHKEFFGELVVNAVYK 187
Query: 584 LDHLLPLDMIGIKKVPGGSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKISLLNIELE 763
L L IGIKKV GGS ++QLI GVAFKKTFSYAGFE QPK + PKI LLN+ELE
Sbjct: 188 LGDNLDKSNIGIKKVTGGSCLDTQLIYGVAFKKTFSYAGFEQQPKKFINPKILLLNVELE 247
Query: 764 LKSEKENAEIRVSSVEEYQRIVDAEWQILYDKLEAIYKSGAKI 892
LK+EKENAE+R+ + EY IV AEW I++ KL I GA I
Sbjct: 248 LKAEKENAEVRIENPNEYNSIVQAEWDIIFKKLNLIKDCGANI 290
>sp|P54410|TCPH_TETTH T-complex protein 1, eta subunit (TCP-1-eta) (CCT-eta)
Length = 353
Score = 264 bits (674), Expect = 3e-70
Identities = 135/230 (58%), Positives = 172/230 (74%), Gaps = 1/230 (0%)
Frame = +2
Query: 206 NDGATILKLLDVVHPVASTVVQIALSQDDEVGDGTTSVMLLASEFLKQAKSFIEEGVHPE 385
NDGATIL LLD+VHP A T+V IA +QDDEVGDGTTSV LLA E LK++K FIEEG+HP+
Sbjct: 1 NDGATILNLLDIVHPAAKTLVDIAKAQDDEVGDGTTSVCLLAGELLKESKYFIEEGMHPQ 60
Query: 386 LIQXXXXXXXXXXXXXXXXXSVKIEKGNDAERRSLLEKCASTALSSKLVATYKEFFSKLV 565
+I + + N+ E+R +L KCA T+L+SKL+A YKEFFS+LV
Sbjct: 61 IITKGYKEALKLALQFLHENAHSVADKNETEKREMLIKCAQTSLNSKLLAHYKEFFSELV 120
Query: 566 VDAVSSLD-HLLPLDMIGIKKVPGGSLQESQLIAGVAFKKTFSYAGFEMQPKSYKKPKIS 742
V AV +L+ +LL D+IGIK V GGS+ +S L++GVAFKKTFSYAGFE QPK + PKI
Sbjct: 121 VQAVETLETNLLDKDLIGIKMVTGGSVTDSFLVSGVAFKKTFSYAGFEQQPKKFNNPKIC 180
Query: 743 LLNIELELKSEKENAEIRVSSVEEYQRIVDAEWQILYDKLEAIYKSGAKI 892
LLNIELELK+EKENAEIR+ + ++Y+ IVDAEW+++Y+KL I +SGA I
Sbjct: 181 LLNIELELKAEKENAEIRIENPDDYKSIVDAEWELIYEKLRKIVESGANI 230
>sp|Q52500|THSB_PYRKO Thermosome beta subunit (Thermosome subunit 2) (Chaperonin beta
subunit)
Length = 546
Score = 182 bits (462), Expect = 1e-45
Identities = 104/294 (35%), Positives = 169/294 (57%), Gaps = 6/294 (2%)
Frame = +2
Query: 29 LPGAQIVLLKEGTDTSQGIPQIMSNITAIQSIAEAVRTTLGPRGMDKLIIDEKSKATISN 208
L G +V+L EGT G NI A + IAE VRTTLGP+GMDK+++D I+N
Sbjct: 4 LAGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITN 63
Query: 209 DGATILKLLDVVHPVASTVVQIALSQDDEVGDGTTSVMLLASEFLKQAKSFIEEGVHPEL 388
DGATIL +D+ HP A +V++A +QD E GDGTT+ +++A E L++A+ +++ +HP +
Sbjct: 64 DGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSI 123
Query: 389 IQXXXXXXXXXXXXXXXXXSVKIEKGNDAERRSLLEKCASTALSSKLVATYKEFFSKLVV 568
I +I K D E R +L+K A T+++ K +E+ +++ V
Sbjct: 124 IIKGYALAAEKAQEILD----EIAKDVDVEDREILKKAAVTSITGKAAEEEREYLAEIAV 179
Query: 569 DAVSSL------DHLLPLDMIGIKKVPGGSLQESQLIAGVAFKKTFSYAGFEMQPKSYKK 730
+AV + + + LD I +K GGS++++QLI GV K + G PK +
Sbjct: 180 EAVKQVAEKVGETYKVDLDNIKFEKKEGGSVKDTQLIKGVVIDKEVVHPG---MPKRVEG 236
Query: 731 PKISLLNIELELKSEKENAEIRVSSVEEYQRIVDAEWQILYDKLEAIYKSGAKI 892
KI+L+N LE+K + +AEIR++S E+ Q ++ E ++L + ++ I + GA +
Sbjct: 237 AKIALINEALEVKETETDAEIRITSPEQLQAFLEQEEKMLREMVDKIKEVGANV 290
>sp|O24730|THSB_THEK1 Thermosome beta subunit (Thermosome subunit 2) (Chaperonin beta
subunit)
Length = 546
Score = 182 bits (462), Expect = 1e-45
Identities = 104/294 (35%), Positives = 169/294 (57%), Gaps = 6/294 (2%)
Frame = +2
Query: 29 LPGAQIVLLKEGTDTSQGIPQIMSNITAIQSIAEAVRTTLGPRGMDKLIIDEKSKATISN 208
L G +V+L EGT G NI A + IAE VRTTLGP+GMDK+++D I+N
Sbjct: 4 LAGQPVVILPEGTQRYVGRDAQRLNILAARIIAETVRTTLGPKGMDKMLVDSLGDIVITN 63
Query: 209 DGATILKLLDVVHPVASTVVQIALSQDDEVGDGTTSVMLLASEFLKQAKSFIEEGVHPEL 388
DGATIL +D+ HP A +V++A +QD E GDGTT+ +++A E L++A+ +++ +HP +
Sbjct: 64 DGATILDEMDIQHPAAKMMVEVAKTQDKEAGDGTTTAVVIAGELLRKAEELLDQNIHPSI 123
Query: 389 IQXXXXXXXXXXXXXXXXXSVKIEKGNDAERRSLLEKCASTALSSKLVATYKEFFSKLVV 568
I +I K D E R +L+K A T+++ K +E+ +++ V
Sbjct: 124 IIKGYALAAEKAQEILD----EIAKDVDVEDREILKKAAVTSITGKAAEEEREYLAEIAV 179
Query: 569 DAVSSL------DHLLPLDMIGIKKVPGGSLQESQLIAGVAFKKTFSYAGFEMQPKSYKK 730
+AV + + + LD I +K GGS++++QLI GV K + G PK +
Sbjct: 180 EAVKQVAEKVGETYKVDLDNIKFEKKEGGSVKDTQLIKGVVIDKEVVHPG---MPKRVEG 236
Query: 731 PKISLLNIELELKSEKENAEIRVSSVEEYQRIVDAEWQILYDKLEAIYKSGAKI 892
KI+L+N LE+K + +AEIR++S E+ Q ++ E ++L + ++ I + GA +
Sbjct: 237 AKIALINEALEVKETETDAEIRITSPEQLQAFLEQEEKMLREMVDKIKEVGANV 290
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,490,222
Number of Sequences: 369166
Number of extensions: 1354275
Number of successful extensions: 4834
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4363
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8982382310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)