Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_K12
(369 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interact... 90 1e-18
sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-intera... 88 5e-18
sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-intera... 87 2e-17
sp|P36113|YKZ7_YEAST Hypothetical 63.6 kDa protein in YPT52... 39 0.005
sp|Q9UMN6|MLL4_HUMAN Myeloid/lymphoid or mixed-lineage leuk... 35 0.070
sp|O95376|ARI2_HUMAN Ariadne-2 protein homolog (ARI-2) (Tri... 33 0.16
sp|Q9Z1K6|ARI2_MOUSE Ariadne-2 protein homolog (ARI-2) (Tri... 33 0.16
sp|Q22431|ARI2_CAEEL Probable ariadne-2 protein (Ari-2) 32 0.60
sp|O76924|ARI2_DROME Ariadne-2 protein (Ari-2) 32 0.60
sp|P29240|5NTD_DISOM 5'-nucleotidase precursor (Ecto-nucleo... 30 1.3
>sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interacting protein 3 (RBCC protein
interacting with PKC) (Protein kinase C-binding protein
beta-15)
Length = 498
Score = 90.1 bits (222), Expect = 1e-18
Identities = 37/73 (50%), Positives = 46/73 (63%)
Frame = +2
Query: 32 IENNEAIYCMKCGMFLEFVGGCDWICCPCCQHEICFRTKLSRWGPKGKGDFSGGCRCLYD 211
++ EA+YC +C + ++ GCDWI C C EIC+ TK RWGP G GD SGGCRC +
Sbjct: 427 LQQGEAMYCPQCRIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVN 486
Query: 212 AKTKCHPDCNNCH 250
CHP C NCH
Sbjct: 487 G-IPCHPSCQNCH 498
>sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-interacting protein 3
(UbcM4-interacting protein 28)
Length = 498
Score = 88.2 bits (217), Expect = 5e-18
Identities = 36/73 (49%), Positives = 46/73 (63%)
Frame = +2
Query: 32 IENNEAIYCMKCGMFLEFVGGCDWICCPCCQHEICFRTKLSRWGPKGKGDFSGGCRCLYD 211
++ EA++C +C + ++ GCDWI C C EIC+ TK RWGP G GD SGGCRC +
Sbjct: 427 LQQGEAMHCPQCRIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVN 486
Query: 212 AKTKCHPDCNNCH 250
CHP C NCH
Sbjct: 487 G-IPCHPSCQNCH 498
>sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-interacting protein 3 (Hepatitis B
virus X-associated protein 4) (HBV-associated factor 4)
(RING finger protein 54)
Length = 500
Score = 86.7 bits (213), Expect = 2e-17
Identities = 36/73 (49%), Positives = 45/73 (61%)
Frame = +2
Query: 32 IENNEAIYCMKCGMFLEFVGGCDWICCPCCQHEICFRTKLSRWGPKGKGDFSGGCRCLYD 211
++ EA+ C +C + ++ GCDWI C C EIC+ TK RWGP G GD SGGCRC +
Sbjct: 429 LQQGEAMRCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVN 488
Query: 212 AKTKCHPDCNNCH 250
CHP C NCH
Sbjct: 489 G-IPCHPSCQNCH 500
>sp|P36113|YKZ7_YEAST Hypothetical 63.6 kDa protein in YPT52-GCN3 intergenic region
Length = 551
Score = 38.5 bits (88), Expect = 0.005
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +2
Query: 56 CMKCGMFLEFVGGCDWICCPCCQHEICFRTKLSRWGPKGKGDF 184
C KC + +E GGC+ + C C++E C+ + W P GK F
Sbjct: 341 CPKCSVNIEKNGGCNHMVCSSCKYEFCWICE-GPWAPHGKNFF 382
>sp|Q9UMN6|MLL4_HUMAN Myeloid/lymphoid or mixed-lineage leukemia protein 4 (Trithorax
homolog 2)
Length = 2715
Score = 34.7 bits (78), Expect = 0.070
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Frame = +2
Query: 101 WICCPCCQHEICFRTKLSRWGPKGKGDFSGGCRC--LYDAKTKCHPDCNNCH 250
WIC C + + C T W + GD+S RC LY+ C P C C+
Sbjct: 1295 WICSACVRCKSCGATPGKNWDVEWSGDYSLCPRCTQLYEKGNYC-PICTRCY 1345
>sp|O95376|ARI2_HUMAN Ariadne-2 protein homolog (ARI-2) (Triad1 protein)
Length = 493
Score = 33.5 bits (75), Expect = 0.16
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 56 CMKCGMFLEFVGGCDWICCPCCQHEICFRTKLSRWGPKG 172
C KC + +E GGC+ + C C+H+ C+ L W G
Sbjct: 297 CPKCNICIEKNGGCNHMQCSKCKHDFCWMC-LGDWKTHG 334
>sp|Q9Z1K6|ARI2_MOUSE Ariadne-2 protein homolog (ARI-2) (Triad1 protein)
(UbcM4-interacting protein 48)
Length = 492
Score = 33.5 bits (75), Expect = 0.16
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 56 CMKCGMFLEFVGGCDWICCPCCQHEICFRTKLSRWGPKG 172
C KC + +E GGC+ + C C+H+ C+ L W G
Sbjct: 296 CPKCNICIEKNGGCNHMQCSKCKHDFCWMC-LGDWKTHG 333
>sp|Q22431|ARI2_CAEEL Probable ariadne-2 protein (Ari-2)
Length = 482
Score = 31.6 bits (70), Expect = 0.60
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 56 CMKCGMFLEFVGGCDWICCPCCQHEICF 139
C +C +E GGC+ I C C+H C+
Sbjct: 287 CPQCHSCIEKAGGCNHIQCTRCRHHFCW 314
>sp|O76924|ARI2_DROME Ariadne-2 protein (Ari-2)
Length = 509
Score = 31.6 bits (70), Expect = 0.60
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +2
Query: 56 CMKCGMFLEFVGGCDWICCPCCQHEICFRTKLSRWGPKG 172
C KC + +E GGC+ + C C+H+ C+ L W G
Sbjct: 311 CPKCHICIEKNGGCNHMQCFNCKHDFCWMC-LGDWKTHG 348
>sp|P29240|5NTD_DISOM 5'-nucleotidase precursor (Ecto-nucleotidase)
Length = 577
Score = 30.4 bits (67), Expect = 1.3
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -2
Query: 236 NPDDILFWHHISICILQKNHLYLLDPIGSI*FESKFHADNKGNISNRSLLQIL 78
NPD+ FW+H+SICI Q + + + N G I SLL +L
Sbjct: 375 NPDE-KFWNHVSICIFQGGGI-----------RAPINEQNNGTIQVDSLLAVL 415
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,004,307
Number of Sequences: 369166
Number of extensions: 769043
Number of successful extensions: 2171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2167
length of database: 68,354,980
effective HSP length: 89
effective length of database: 51,913,565
effective search space used: 1713147645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)