Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_K01
(583 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q922B2|SYD_MOUSE Aspartyl-tRNA synthetase (Aspartate--tR... 203 3e-52
sp|P15178|SYD_RAT Aspartyl-tRNA synthetase (Aspartate--tRNA... 203 3e-52
sp|P14868|SYD_HUMAN Aspartyl-tRNA synthetase (Aspartate--tR... 201 8e-52
sp|Q03577|SYD_CAEEL Aspartyl-tRNA synthetase (Aspartate--tR... 195 6e-50
sp|P04802|SYDC_YEAST Aspartyl-tRNA synthetase, cytoplasmic ... 193 2e-49
sp|Q979P6|SYD_THEVO Aspartyl-tRNA synthetase (Aspartate--tR... 128 1e-29
sp|Q9HJM1|SYD_THEAC Aspartyl-tRNA synthetase (Aspartate--tR... 117 2e-26
sp|O26328|SYD_METTH Aspartyl-tRNA synthetase (Aspartate--tR... 117 2e-26
sp|Q8TQ68|SYD_METAC Aspartyl-tRNA synthetase (Aspartate--tR... 114 2e-25
sp|Q8Q0R2|SYD_METMA Aspartyl-tRNA synthetase (Aspartate--tR... 112 5e-25
>sp|Q922B2|SYD_MOUSE Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 501
Score = 203 bits (516), Expect = 3e-52
Identities = 98/160 (61%), Positives = 117/160 (73%)
Frame = +2
Query: 2 PTLILTFAEGVAMLNEAGIEMSEHEDLSTTNEXXXXXXXXXXXXTDFYVLDKFPLSVRPF 181
PTL L + E +AML EAG+EM + EDLST NE TDFYVLDK+PL+VRPF
Sbjct: 342 PTLRLEYCEALAMLREAGVEMDDEEDLSTPNEKLLGRLVKEKYDTDFYVLDKYPLAVRPF 401
Query: 182 YTMPDEDYPGFSNSYDVFMRGEEIMSGAQRVHDAAKLRESAMKHRINLDTIKDYLESFEY 361
YTMPD P SNSYD+FMRGEEI+SGAQR+HD L E A+ H I+L+ IK Y++SF +
Sbjct: 402 YTMPDPRNPKQSNSYDMFMRGEEILSGAQRIHDPQLLTERALHHGIDLEKIKAYIDSFRF 461
Query: 362 GCKPHAGGGIGLDRVVMLYLGLDNIRRVSMFPRDPNRYRP 481
G PHAGGGIGL+RV ML+LGL N+R+ SMFPRDP R P
Sbjct: 462 GAPPHAGGGIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP 501
>sp|P15178|SYD_RAT Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 501
Score = 203 bits (516), Expect = 3e-52
Identities = 98/160 (61%), Positives = 117/160 (73%)
Frame = +2
Query: 2 PTLILTFAEGVAMLNEAGIEMSEHEDLSTTNEXXXXXXXXXXXXTDFYVLDKFPLSVRPF 181
PTL L + E +AML EAG+EM + EDLST NE TDFYVLDK+PL+VRPF
Sbjct: 342 PTLRLEYCEALAMLREAGVEMDDEEDLSTPNEKLLGRLVKEKYDTDFYVLDKYPLAVRPF 401
Query: 182 YTMPDEDYPGFSNSYDVFMRGEEIMSGAQRVHDAAKLRESAMKHRINLDTIKDYLESFEY 361
YTMPD P SNSYD+FMRGEEI+SGAQR+HD L E A+ H I+L+ IK Y++SF +
Sbjct: 402 YTMPDPRNPKQSNSYDMFMRGEEILSGAQRIHDPQLLTERALHHGIDLEKIKAYIDSFRF 461
Query: 362 GCKPHAGGGIGLDRVVMLYLGLDNIRRVSMFPRDPNRYRP 481
G PHAGGGIGL+RV ML+LGL N+R+ SMFPRDP R P
Sbjct: 462 GAPPHAGGGIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP 501
>sp|P14868|SYD_HUMAN Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 501
Score = 201 bits (512), Expect = 8e-52
Identities = 96/160 (60%), Positives = 117/160 (73%)
Frame = +2
Query: 2 PTLILTFAEGVAMLNEAGIEMSEHEDLSTTNEXXXXXXXXXXXXTDFYVLDKFPLSVRPF 181
PTL L + E +AML EAG+EM + +DLST NE TDFY+LDK+PL+VRPF
Sbjct: 342 PTLRLEYCEALAMLREAGVEMGDEDDLSTPNEKLLGHLVKEKYDTDFYILDKYPLAVRPF 401
Query: 182 YTMPDEDYPGFSNSYDVFMRGEEIMSGAQRVHDAAKLRESAMKHRINLDTIKDYLESFEY 361
YTMPD P SNSYD+FMRGEEI+SGAQR+HD L E A+ H I+L+ IK Y++SF +
Sbjct: 402 YTMPDPRNPKQSNSYDMFMRGEEILSGAQRIHDPQLLTERALHHGIDLEKIKAYIDSFRF 461
Query: 362 GCKPHAGGGIGLDRVVMLYLGLDNIRRVSMFPRDPNRYRP 481
G PHAGGGIGL+RV ML+LGL N+R+ SMFPRDP R P
Sbjct: 462 GAPPHAGGGIGLERVTMLFLGLHNVRQTSMFPRDPKRLTP 501
>sp|Q03577|SYD_CAEEL Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 531
Score = 195 bits (496), Expect = 6e-50
Identities = 94/160 (58%), Positives = 115/160 (71%)
Frame = +2
Query: 2 PTLILTFAEGVAMLNEAGIEMSEHEDLSTTNEXXXXXXXXXXXXTDFYVLDKFPLSVRPF 181
P LIL + + + +L E GIE+ + +DLST E TDFYVLDKFPLSVRPF
Sbjct: 372 PPLILKYPDAITLLRENGIEIGDEDDLSTPVEKFLGKLVKEKYSTDFYVLDKFPLSVRPF 431
Query: 182 YTMPDEDYPGFSNSYDVFMRGEEIMSGAQRVHDAAKLRESAMKHRINLDTIKDYLESFEY 361
YTMPD +SNSYD+FMRGEEI+SGAQR+HDA L E A H+++L I+ Y++SF+Y
Sbjct: 432 YTMPDAHDERYSNSYDMFMRGEEILSGAQRIHDADMLVERAKHHQVDLAKIQSYIDSFKY 491
Query: 362 GCKPHAGGGIGLDRVVMLYLGLDNIRRVSMFPRDPNRYRP 481
GC PHAGGGIGL+RV ML+LGL NIR S+FPRDP R P
Sbjct: 492 GCPPHAGGGIGLERVTMLFLGLHNIRLASLFPRDPKRLTP 531
>sp|P04802|SYDC_YEAST Aspartyl-tRNA synthetase, cytoplasmic (Aspartate--tRNA ligase)
(AspRS)
Length = 557
Score = 193 bits (491), Expect = 2e-49
Identities = 94/158 (59%), Positives = 111/158 (70%), Gaps = 2/158 (1%)
Frame = +2
Query: 14 LTFAEGVAMLNEAGIEMSEHEDLSTTNEXXXXXXXXXXXXTDFYVLDKFPLSVRPFYTMP 193
LT+ EG+ ML AG E+ + EDLST NE TDFY+LDKFPL +RPFYTMP
Sbjct: 400 LTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMP 459
Query: 194 DEDYPGFSNSYDVFMRGEEIMSGAQRVHDAAKLRESAMKHRINLDT--IKDYLESFEYGC 367
D P +SNSYD FMRGEEI+SGAQR+HD A L+E H ++ + +KDY + F YGC
Sbjct: 460 DPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGC 519
Query: 368 KPHAGGGIGLDRVVMLYLGLDNIRRVSMFPRDPNRYRP 481
PHAGGGIGL+RVVM YL L NIRR S+FPRDP R RP
Sbjct: 520 PPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKRLRP 557
>sp|Q979P6|SYD_THEVO Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 428
Score = 128 bits (321), Expect = 1e-29
Identities = 63/156 (40%), Positives = 95/156 (60%)
Frame = +2
Query: 14 LTFAEGVAMLNEAGIEMSEHEDLSTTNEXXXXXXXXXXXXTDFYVLDKFPLSVRPFYTMP 193
+T+ E + +L + G+E D S DFY + ++P S+RPFYTMP
Sbjct: 278 ITYKECIKLLEKEGLEFQFGNDFSPEE-----LRIIGRNFKDFYFITEWPSSLRPFYTMP 332
Query: 194 DEDYPGFSNSYDVFMRGEEIMSGAQRVHDAAKLRESAMKHRINLDTIKDYLESFEYGCKP 373
+ D P +NS+D+ R E+ SGAQRVHD L + + ++N+D+ K Y+++F+YG P
Sbjct: 333 NRDDPTITNSFDLQYREVEVTSGAQRVHDPDLLLKRFNEKKLNIDSFKFYIQAFKYGMPP 392
Query: 374 HAGGGIGLDRVVMLYLGLDNIRRVSMFPRDPNRYRP 481
HAG G+GL+R+ M+ LGL+NIR ++FPRD R P
Sbjct: 393 HAGWGLGLERLTMIVLGLNNIRETTLFPRDRTRIIP 428
>sp|Q9HJM1|SYD_THEAC Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 428
Score = 117 bits (293), Expect = 2e-26
Identities = 58/156 (37%), Positives = 95/156 (60%)
Frame = +2
Query: 14 LTFAEGVAMLNEAGIEMSEHEDLSTTNEXXXXXXXXXXXXTDFYVLDKFPLSVRPFYTMP 193
+T+ + + +L + GI+ + +D S + FY + ++P SVRPFYTMP
Sbjct: 278 ITYEQCIDLLQKDGIDFTFGDDFSPDQ-----LRTIGSRFSGFYFITEWPSSVRPFYTMP 332
Query: 194 DEDYPGFSNSYDVFMRGEEIMSGAQRVHDAAKLRESAMKHRINLDTIKDYLESFEYGCKP 373
+ P +NS+D+ R E+ SGAQRVHD L + + ++++ + + Y+++F+YG P
Sbjct: 333 KSEDPRLTNSFDLQYREIEVTSGAQRVHDPKMLIQRFNEKKLDVKSFQFYVDAFKYGMPP 392
Query: 374 HAGGGIGLDRVVMLYLGLDNIRRVSMFPRDPNRYRP 481
HAG G+GL+R+ M+ LGL+NIR ++FPRD R P
Sbjct: 393 HAGWGLGLERLTMILLGLNNIRETTLFPRDRTRIVP 428
>sp|O26328|SYD_METTH Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 437
Score = 117 bits (293), Expect = 2e-26
Identities = 62/156 (39%), Positives = 83/156 (53%)
Frame = +2
Query: 14 LTFAEGVAMLNEAGIEMSEHEDLSTTNEXXXXXXXXXXXXTDFYVLDKFPLSVRPFYTMP 193
L + E V M+N G+ M EDL E +Y + +P +++PFY MP
Sbjct: 287 LEYDEAVEMVNSKGVPMKHGEDLPRAAEKALGEIMDG-----YYFITSWPTAIKPFYVMP 341
Query: 194 DEDYPGFSNSYDVFMRGEEIMSGAQRVHDAAKLRESAMKHRINLDTIKDYLESFEYGCKP 373
DED P S+++D+ R EI SGA RVH L E + +N D+ + YL +FEYG P
Sbjct: 342 DEDDPERSHAFDLMYRDLEISSGAMRVHQHDLLVEKIKRQGLNPDSFESYLSAFEYGMPP 401
Query: 374 HAGGGIGLDRVVMLYLGLDNIRRVSMFPRDPNRYRP 481
HAG G+G +R M GL NIR +FPRD R P
Sbjct: 402 HAGWGLGAERFNMTLTGLKNIRETVLFPRDRRRLTP 437
>sp|Q8TQ68|SYD_METAC Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 444
Score = 114 bits (284), Expect = 2e-25
Identities = 63/161 (39%), Positives = 86/161 (53%), Gaps = 1/161 (0%)
Frame = +2
Query: 2 PTLILTFAEGVAMLNEAGIE-MSEHEDLSTTNEXXXXXXXXXXXXTDFYVLDKFPLSVRP 178
P L LT+ E + ++N E M +DL T E Y + +P ++P
Sbjct: 284 PFLKLTYDEVIEIVNSRCEEKMHWGDDLGTLGEHTVGNYVYETTGESHYFIIDWPTEIKP 343
Query: 179 FYTMPDEDYPGFSNSYDVFMRGEEIMSGAQRVHDAAKLRESAMKHRINLDTIKDYLESFE 358
FY MP ED P FS S+D+ R E+ SGAQR+H + L+ +N D + YL++FE
Sbjct: 344 FYAMPYEDRPEFSKSFDMMHRTMELSSGAQRIHISELLKSRIESQGLNPDGFEFYLKAFE 403
Query: 359 YGCKPHAGGGIGLDRVVMLYLGLDNIRRVSMFPRDPNRYRP 481
YG PHAG G+G +R VM LG +NIR +FPRD R P
Sbjct: 404 YGMPPHAGWGMGCERFVMTMLGTENIRDTVLFPRDRRRLSP 444
>sp|Q8Q0R2|SYD_METMA Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 444
Score = 112 bits (281), Expect = 5e-25
Identities = 62/161 (38%), Positives = 86/161 (53%), Gaps = 1/161 (0%)
Frame = +2
Query: 2 PTLILTFAEGVAMLNEAGIE-MSEHEDLSTTNEXXXXXXXXXXXXTDFYVLDKFPLSVRP 178
P L LT+ E + ++N E M +DL T E Y + +P ++P
Sbjct: 284 PFLKLTYDEVIEIINSRCEEKMHWGDDLGTLGEHTVGDHVYETTGESHYFIIDWPTEIKP 343
Query: 179 FYTMPDEDYPGFSNSYDVFMRGEEIMSGAQRVHDAAKLRESAMKHRINLDTIKDYLESFE 358
FY MP ED P FS S+D+ R E+ SGAQR+H + L+ +N D + YL++FE
Sbjct: 344 FYAMPYEDRPEFSKSFDMMHRTMELSSGAQRIHIPSLLKNRIESQGLNPDGFEFYLKAFE 403
Query: 359 YGCKPHAGGGIGLDRVVMLYLGLDNIRRVSMFPRDPNRYRP 481
+G PHAG G+G +R VM LG +NIR +FPRD R P
Sbjct: 404 FGMPPHAGWGMGCERFVMTMLGTENIRDTVLFPRDRRRLSP 444
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,064,555
Number of Sequences: 369166
Number of extensions: 1364930
Number of successful extensions: 3536
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3385
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4308286840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)