Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_J22-2
(184 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6NXD2|CHM2B_BRARE Charged multivesicular body protein 2... 48 6e-06
sp|Q66IV6|CH2B2_XENLA Charged multivesicular body protein 2... 47 1e-05
sp|Q6NVL7|CHM2B_XENTR Charged multivesicular body protein 2... 47 1e-05
sp|Q7SYR0|CH2B1_XENLA Charged multivesicular body protein 2... 47 1e-05
sp|Q6DFS6|CHM2A_XENTR Charged multivesicular body protein 2... 46 2e-05
sp|Q6IP52|CHM2A_XENLA Charged multivesicular body protein 2... 45 4e-05
sp|Q5ZHN1|CHM2A_CHICK Charged multivesicular body protein 2... 45 4e-05
sp|Q5F3A2|CHM2B_CHICK Charged multivesicular body protein 2... 45 7e-05
sp|Q7ZW25|CHM2A_BRARE Charged multivesicular body protein 2... 45 7e-05
sp|Q9UQN3|CHM2B_HUMAN Charged multivesicular body protein 2... 44 9e-05
>sp|Q6NXD2|CHM2B_BRARE Charged multivesicular body protein 2b (Chromatin modifying protein
2b) (CHMP2b)
Length = 214
Score = 48.1 bits (113), Expect = 6e-06
Identities = 21/52 (40%), Positives = 36/52 (69%)
Frame = +1
Query: 7 VRQMQSCIRKEERKLDRDINSIDRSMKQQELEIKKYAKQGNLDAAKILAKRI 162
+++ +R +R++ RD ++++ KQ E+EIKK AK GN DA K+LAK++
Sbjct: 14 IKEQNKELRGTQRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACKVLAKQL 65
>sp|Q66IV6|CH2B2_XENLA Charged multivesicular body protein 2b-2 (Chromatin modifying
protein 2b-2) (CHMP2b-2)
Length = 214
Score = 47.0 bits (110), Expect = 1e-05
Identities = 21/52 (40%), Positives = 35/52 (67%)
Frame = +1
Query: 7 VRQMQSCIRKEERKLDRDINSIDRSMKQQELEIKKYAKQGNLDAAKILAKRI 162
+R+ +R +R + RD ++++ KQ E+EIKK AK GN DA ++LAK++
Sbjct: 14 IREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKTGNKDACRVLAKQL 65
>sp|Q6NVL7|CHM2B_XENTR Charged multivesicular body protein 2b (Chromatin modifying protein
2b) (CHMP2b)
Length = 214
Score = 47.0 bits (110), Expect = 1e-05
Identities = 21/52 (40%), Positives = 35/52 (67%)
Frame = +1
Query: 7 VRQMQSCIRKEERKLDRDINSIDRSMKQQELEIKKYAKQGNLDAAKILAKRI 162
+R+ +R +R + RD ++++ KQ E+EIKK AK GN DA ++LAK++
Sbjct: 14 IREQNKELRGTQRAITRDRAALEKQEKQLEMEIKKMAKAGNKDACRVLAKQL 65
>sp|Q7SYR0|CH2B1_XENLA Charged multivesicular body protein 2b-1 (Chromatin modifying
protein 2b-1) (CHMP2b-1)
Length = 214
Score = 47.0 bits (110), Expect = 1e-05
Identities = 20/52 (38%), Positives = 35/52 (67%)
Frame = +1
Query: 7 VRQMQSCIRKEERKLDRDINSIDRSMKQQELEIKKYAKQGNLDAAKILAKRI 162
++ ++ ++R + RD ++++ KQ E+EIKK AK GN DA K+LAK++
Sbjct: 14 IKDQNKELKGQQRAITRDRTALEKQEKQLEMEIKKMAKAGNKDACKVLAKQL 65
>sp|Q6DFS6|CHM2A_XENTR Charged multivesicular body protein 2a (Chromatin modifying protein
2a) (CHMP2a)
Length = 220
Score = 46.2 bits (108), Expect = 2e-05
Identities = 22/52 (42%), Positives = 34/52 (65%)
Frame = +1
Query: 1 EKVRQMQSCIRKEERKLDRDINSIDRSMKQQELEIKKYAKQGNLDAAKILAK 156
E +RQ Q + K R++DR+ +++ K+ +IKK AKQG +DA KI+AK
Sbjct: 13 EMLRQNQRALNKAMREMDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAK 64
>sp|Q6IP52|CHM2A_XENLA Charged multivesicular body protein 2a (Chromatin modifying protein
2a) (CHMP2a)
Length = 220
Score = 45.4 bits (106), Expect = 4e-05
Identities = 22/52 (42%), Positives = 34/52 (65%)
Frame = +1
Query: 1 EKVRQMQSCIRKEERKLDRDINSIDRSMKQQELEIKKYAKQGNLDAAKILAK 156
E +RQ Q + + R+LDR+ +++ K+ +IKK AKQG +DA KI+AK
Sbjct: 13 ELLRQNQRALNRAMRELDRERQKLEQQEKKIIADIKKMAKQGQMDAVKIMAK 64
>sp|Q5ZHN1|CHM2A_CHICK Charged multivesicular body protein 2a (Chromatin modifying protein
2a) (CHMP2a)
Length = 220
Score = 45.4 bits (106), Expect = 4e-05
Identities = 22/52 (42%), Positives = 34/52 (65%)
Frame = +1
Query: 1 EKVRQMQSCIRKEERKLDRDINSIDRSMKQQELEIKKYAKQGNLDAAKILAK 156
E +RQ Q + + R+LDR+ ++ K+ ++IKK AKQG +DA KI+AK
Sbjct: 13 ELLRQNQRALTRAMRELDRERQKLEAQEKKIIIDIKKMAKQGQMDAVKIMAK 64
>sp|Q5F3A2|CHM2B_CHICK Charged multivesicular body protein 2b (Chromatin modifying protein
2b) (CHMP2b)
Length = 214
Score = 44.7 bits (104), Expect = 7e-05
Identities = 20/52 (38%), Positives = 35/52 (67%)
Frame = +1
Query: 7 VRQMQSCIRKEERKLDRDINSIDRSMKQQELEIKKYAKQGNLDAAKILAKRI 162
+++ +R +R + RD ++++ +Q ELEIKK AK GN +A K+LAK++
Sbjct: 14 IKEQNRELRGTQRTITRDRAALEKQERQLELEIKKMAKTGNKEACKVLAKQL 65
>sp|Q7ZW25|CHM2A_BRARE Charged multivesicular body protein 2a (Chromatin modifying protein
2a) (CHMP2a)
Length = 220
Score = 44.7 bits (104), Expect = 7e-05
Identities = 22/52 (42%), Positives = 33/52 (63%)
Frame = +1
Query: 1 EKVRQMQSCIRKEERKLDRDINSIDRSMKQQELEIKKYAKQGNLDAAKILAK 156
E +RQ Q + + R LDR+ +++ K+ +IKK AKQG +DA KI+AK
Sbjct: 13 EMLRQNQRALNRAMRDLDRERQRLEQQEKKIIADIKKMAKQGQMDAVKIMAK 64
>sp|Q9UQN3|CHM2B_HUMAN Charged multivesicular body protein 2b (Chromatin modifying protein
2b) (CHMP2b) (CHMP2.5) (Vacuolar protein sorting 2-2)
(Vps2-2) (hVps2-2)
sp|Q5RAV2|CHM2B_PONPY Charged multivesicular body protein 2b (Chromatin modifying protein
2b) (CHMP2b)
Length = 213
Score = 44.3 bits (103), Expect = 9e-05
Identities = 21/52 (40%), Positives = 35/52 (67%)
Frame = +1
Query: 7 VRQMQSCIRKEERKLDRDINSIDRSMKQQELEIKKYAKQGNLDAAKILAKRI 162
+++ +R +R + RD ++++ KQ ELEIKK AK GN +A K+LAK++
Sbjct: 14 IKEQNRELRGTQRAIIRDRAALEKQEKQLELEIKKMAKIGNKEACKVLAKQL 65
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,821,151
Number of Sequences: 369166
Number of extensions: 96569
Number of successful extensions: 574
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 68,354,980
effective HSP length: 33
effective length of database: 62,258,725
effective search space used: 1680985575
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)