Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_J22-1
(658 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich... 57 3e-08
sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (E... 55 2e-07
sp|Q8VE97|SFRS4_MOUSE Splicing factor, arginine/serine-rich 4 54 4e-07
sp|Q13247|SFRS6_HUMAN Splicing factor, arginine/serine-rich... 50 4e-06
sp|Q13243|SFRS5_HUMAN Splicing factor, arginine/serine-rich... 50 5e-06
sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/ser... 50 5e-06
sp|Q8WXA9|SFR12_HUMAN Splicing factor, arginine/serine-rich... 49 2e-05
sp|Q05519|SFR11_HUMAN Splicing factor arginine/serine-rich ... 48 3e-05
sp|Q6PDU1|SFRS2_RAT Splicing factor, arginine/serine-rich 2... 48 3e-05
sp|Q4P0G6|CWC21_USTMA Pre-mRNA splicing factor CWC21 47 3e-05
>sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich 4 (Pre-mRNA splicing factor
SRP75) (SRP001LB)
Length = 494
Score = 57.4 bits (137), Expect = 3e-08
Identities = 44/107 (41%), Positives = 49/107 (45%)
Frame = +1
Query: 79 PKKGHSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVSARKE 258
P S S R HSRS S SR S R S S K RSRS SRS S +
Sbjct: 177 PGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRS 236
Query: 259 RSRSGSEKGLSRSQSNRRMTVSLKSSSRSSEGNKRTPPSRDVSVEKI 399
+SRS S+K SRS S KS SRS K S+D + EKI
Sbjct: 237 QSRSRSKKEKSRSPSKE------KSRSRSHSAGKSRSKSKDQAEEKI 277
Score = 53.5 bits (127), Expect = 5e-07
Identities = 45/114 (39%), Positives = 58/114 (50%), Gaps = 6/114 (5%)
Frame = +1
Query: 73 ASPKKGHSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVS-- 246
+S K S S SG R S+S S + +SRS K++ SRS S +K RSRS SRS S
Sbjct: 213 SSHSKSRSRSRSGSRSRSKSRS-RSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKD 271
Query: 247 ARKERSRSGSEKGLSRSQSNRRMTVSLKSSSRSS----EGNKRTPPSRDVSVEK 396
+E+ ++ G +S+S R KS SRS E KR SR S EK
Sbjct: 272 QAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEK 325
Score = 50.4 bits (119), Expect = 4e-06
Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Frame = +1
Query: 82 KKGHSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKK----DRSRSPKREASRSVSA 249
+KG S R SRS S + SR + S++ S+KK D RS R SRSVS
Sbjct: 354 RKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSK 413
Query: 250 RKERSRSGSEKGLSRSQS-NRRMTVSLKSSSRSSEGNKRTPPSRDVSVEK 396
+E ++S S + R +S N +S SRS+ +K PS S K
Sbjct: 414 EREHAKSESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSK 463
Score = 47.4 bits (111), Expect = 3e-05
Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 1/106 (0%)
Frame = +1
Query: 82 KKGHSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRS-PKREASRSVSARKE 258
+K S S S + HS+S + SRS + SRS S + +SRS K+E SRS S K
Sbjct: 202 RKSRSRSGSSKSSHSKS---RSRSRSGSR---SRSKSRSRSQSRSRSKKEKSRSPSKEKS 255
Query: 259 RSRSGSEKGLSRSQSNRRMTVSLKSSSRSSEGNKRTPPSRDVSVEK 396
RSRS S G SRS+S + ++++ + R+ PSR S K
Sbjct: 256 RSRSHS-AGKSRSKSKDQAEEKIQNNDNVGKPKSRS-PSRHKSKSK 299
Score = 46.2 bits (108), Expect = 7e-05
Identities = 42/126 (33%), Positives = 56/126 (44%), Gaps = 25/126 (19%)
Frame = +1
Query: 94 STSASGRRDHSRSISPKDESRSSFK-RDHSRSVSAKKDRS-------------------- 210
S S S R SRS S K++SRS K + SRS SA K RS
Sbjct: 228 SRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPK 287
Query: 211 -RSPKREASRSVSARKERSRSGSEK---GLSRSQSNRRMTVSLKSSSRSSEGNKRTPPSR 378
RSP R S+S S + + R E+ +SR +S + +S SRS G++ SR
Sbjct: 288 SRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSR 347
Query: 379 DVSVEK 396
S +K
Sbjct: 348 SKSKDK 353
Score = 45.1 bits (105), Expect = 2e-04
Identities = 41/128 (32%), Positives = 55/128 (42%), Gaps = 21/128 (16%)
Frame = +1
Query: 76 SPKKGHSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVS--- 246
SP + S S S R R + ++E R S R S+ S ++ RSRS + SRS S
Sbjct: 290 SPSRHKSKSKSRSRSQERRV--EEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSR 347
Query: 247 -----ARKERSRSGSE---KGLSRSQSNRRMTVSLKSSSRSSEGNKR----------TPP 372
RK R RS E + SRS+S R K S++ K+ P
Sbjct: 348 SKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSP 407
Query: 373 SRDVSVEK 396
SR VS E+
Sbjct: 408 SRSVSKER 415
Score = 38.1 bits (87), Expect = 0.020
Identities = 35/104 (33%), Positives = 42/104 (40%), Gaps = 16/104 (15%)
Frame = +1
Query: 82 KKGHSTSASGRRDHSRSISP----------------KDESRSSFKRDHSRSVSAKKDRSR 213
KK T S R SRS+S + E+ + + SRS S K +
Sbjct: 394 KKKEDTDRSQSRSPSRSVSKEREHAKSESSQREGRGESENAGTNQETRSRSRSNSKSKPN 453
Query: 214 SPKREASRSVSARKERSRSGSEKGLSRSQSNRRMTVSLKSSSRS 345
P SRS SA K RSRS K SRS S +S SRS
Sbjct: 454 LPSESRSRSKSASKTRSRS---KSRSRSASRSPSRSRSRSHSRS 494
>sp|P26686|SRR55_DROME Serine-arginine protein 55 (SRP55) (Enhancer of deformed) (52-kDa
bracketing protein) (B52 protein)
Length = 376
Score = 55.1 bits (131), Expect = 2e-07
Identities = 48/104 (46%), Positives = 54/104 (51%), Gaps = 17/104 (16%)
Frame = +1
Query: 76 SPKKGHSTSASGRRDHSR-----SISP-KDESRSSFKRDHSRSVSAKKD------RSRSP 219
S + HS S S R SR S SP K SRS + + SR VS K RSRSP
Sbjct: 225 SRRSSHSRSKSRSRSKSRGGRSKSKSPVKSRSRSRSRSNKSRDVSKSKSKSHSRTRSRSP 284
Query: 220 KREA-----SRSVSARKERSRSGSEKGLSRSQSNRRMTVSLKSS 336
KRE SRSVS R+ RSRS S K + R +R TVS KSS
Sbjct: 285 KRERDSRSRSRSVSKRESRSRSRS-KSIHRDSRSRPPTVSFKSS 327
Score = 44.7 bits (104), Expect = 2e-04
Identities = 32/100 (32%), Positives = 45/100 (45%)
Frame = +1
Query: 82 KKGHSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVSARKER 261
++G + G RS S SRS +R RS S + SRS R S+S R +
Sbjct: 192 RRGGRSGGGGGSGRGRSRSSSSRSRSRSRR---RSRSRRSSHSRSKSRSRSKSRGGRSKS 248
Query: 262 SRSGSEKGLSRSQSNRRMTVSLKSSSRSSEGNKRTPPSRD 381
+ SRS+SN+ VS KS S+S + P R+
Sbjct: 249 KSPVKSRSRSRSRSNKSRDVS-KSKSKSHSRTRSRSPKRE 287
Score = 42.4 bits (98), Expect = 0.001
Identities = 42/112 (37%), Positives = 51/112 (45%), Gaps = 7/112 (6%)
Frame = +1
Query: 82 KKGHSTSASGRRDH-------SRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRS 240
+K T +GRR H RS R + SRS S + RSRS + SRS
Sbjct: 174 EKLDDTELNGRRIHLVEDRRGGRSGGGGGSGRGRSRSSSSRSRSRSRRRSRSRRSSHSRS 233
Query: 241 VSARKERSRSGSEKGLSRSQSNRRMTVSLKSSSRSSEGNKRTPPSRDVSVEK 396
K RSRS S G S+S+S +KS SRS R+ SRDVS K
Sbjct: 234 ----KSRSRSKSRGGRSKSKS------PVKSRSRS---RSRSNKSRDVSKSK 272
Score = 41.6 bits (96), Expect = 0.002
Identities = 38/110 (34%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
Frame = +1
Query: 76 SPKKGHSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKRE-------AS 234
S + S S R HSRS K SRS + S+S S K RSRS R S
Sbjct: 215 SRSRSRRRSRSRRSSHSRS---KSRSRSKSRGGRSKSKSPVKSRSRSRSRSNKSRDVSKS 271
Query: 235 RSVSARKERSRSGSEKGLSRSQSNRRMTVSLKSSSRSS---EGNKRTPPS 375
+S S + RSRS + SRS+S +S SRS ++ PP+
Sbjct: 272 KSKSHSRTRSRSPKRERDSRSRSRSVSKRESRSRSRSKSIHRDSRSRPPT 321
>sp|Q8VE97|SFRS4_MOUSE Splicing factor, arginine/serine-rich 4
Length = 489
Score = 53.9 bits (128), Expect = 4e-07
Identities = 42/107 (39%), Positives = 50/107 (46%)
Frame = +1
Query: 79 PKKGHSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVSARKE 258
P S S R HSRS S SR S R S S K RSRS SRS S +
Sbjct: 177 PGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRS 236
Query: 259 RSRSGSEKGLSRSQSNRRMTVSLKSSSRSSEGNKRTPPSRDVSVEKI 399
+SRS S+K SRS S KS SRS +K S+D + +K+
Sbjct: 237 QSRSRSKKEKSRSPSKDN-----KSRSRSRSPDKSRSKSKDHAEDKL 278
Score = 49.7 bits (117), Expect = 7e-06
Identities = 33/76 (43%), Positives = 42/76 (55%)
Frame = +1
Query: 76 SPKKGHSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVSARK 255
S + HS S S R +S S S+SS + SRS S RS+S R SRS S +K
Sbjct: 186 SRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRS-KK 244
Query: 256 ERSRSGSEKGLSRSQS 303
E+SRS S+ SRS+S
Sbjct: 245 EKSRSPSKDNKSRSRS 260
Score = 49.7 bits (117), Expect = 7e-06
Identities = 38/104 (36%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Frame = +1
Query: 91 HSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVSARKERSRS 270
HS S S R SRS S K++SRS K + SRS RSRSP + S+S +++ ++
Sbjct: 227 HSRSKSRSRSQSRSRSKKEKSRSPSKDNKSRS------RSRSPDKSRSKSKDHAEDKLQN 280
Query: 271 GSEKGLSRSQSNRRMTVSLKSSS--RSSEGNKRTPPSRDVSVEK 396
G ++S S R +S S R +E +R SR S EK
Sbjct: 281 NDSAGKAKSHSPSRHDSKSRSRSQERRAEEERRRSVSRARSQEK 324
Score = 46.6 bits (109), Expect = 6e-05
Identities = 41/115 (35%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Frame = +1
Query: 76 SPKKGHSTSASGRRDHSRSIS---PKDESRSSFKRD-HSRSVSAKKDRSRSPKREASRSV 243
S + S + RS+S +++SRS K SRS S + RSRS + R
Sbjct: 297 SKSRSRSQERRAEEERRRSVSRARSQEKSRSQEKSLLKSRSRSRSRSRSRSKDKRKGRKR 356
Query: 244 SARKERSRSGSEKGLSRSQSNRRMTVSLKSSSRSSEGNKRT----PPSRDVSVEK 396
S + RSRS S+ SR S++R + + SSS SS+ K T PSR VS E+
Sbjct: 357 SRDESRSRSRSKSERSRKHSSKRDS-KVSSSSSSSKKKKDTDHSRSPSRSVSKER 410
Score = 43.9 bits (102), Expect = 4e-04
Identities = 37/102 (36%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Frame = +1
Query: 82 KKGHSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRS-PKREASRSVSA-RK 255
+K S S S + HS+S + SRS HSRS S + +SRS K+E SRS S K
Sbjct: 202 RKSRSRSGSSKSSHSKS---RSRSRSG---SHSRSKSRSRSQSRSRSKKEKSRSPSKDNK 255
Query: 256 ERSRSGSEKGLSRSQSNRRMTVSLKSSSRSSEGNKRTPPSRD 381
RSRS S SRS+S L+++ + + +P D
Sbjct: 256 SRSRSRS-PDKSRSKSKDHAEDKLQNNDSAGKAKSHSPSRHD 296
Score = 42.4 bits (98), Expect = 0.001
Identities = 38/101 (37%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Frame = +1
Query: 82 KKGHSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVSARKER 261
+K T +GR+ R + K SR +R +SRS S + RSRS SRS S +
Sbjct: 158 EKLDGTEVNGRK--IRLVEDKPGSRR--RRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKS 213
Query: 262 SRSGSEKGLSRSQSNRRMTVSLKSSSRS-SEGNKRTPPSRD 381
S S S + SRS S+ R +S SRS S+ K PS+D
Sbjct: 214 SHSKS-RSRSRSGSHSRSKSRSRSQSRSRSKKEKSRSPSKD 253
Score = 41.6 bits (96), Expect = 0.002
Identities = 44/118 (37%), Positives = 54/118 (45%), Gaps = 14/118 (11%)
Frame = +1
Query: 76 SPKKGH-STSASGRRDHSRSISPKDESRSSFK--------RDHSRSVSAKKDRSRSPKRE 228
SP K + S S S D SRS S KD + + + HS S K RSRS +R
Sbjct: 249 SPSKDNKSRSRSRSPDKSRSKS-KDHAEDKLQNNDSAGKAKSHSPSRHDSKSRSRSQERR 307
Query: 229 AS----RSVS-ARKERSRSGSEKGLSRSQSNRRMTVSLKSSSRSSEGNKRTPPSRDVS 387
A RSVS AR + EK L +S+S R +S SRS + K SRD S
Sbjct: 308 AEEERRRSVSRARSQEKSRSQEKSLLKSRSRSRS----RSRSRSKDKRKGRKRSRDES 361
Score = 41.6 bits (96), Expect = 0.002
Identities = 41/124 (33%), Positives = 51/124 (41%), Gaps = 22/124 (17%)
Frame = +1
Query: 82 KKGHSTSASGRRDHSRSISPKDESRSSFKRDH---SRSVSAKKDRSRSPKREASRSVSAR 252
+KG S R SRS S + SS KRD S S S+KK + R SRSVS
Sbjct: 351 RKGRKRSRDESRSRSRSKSERSRKHSS-KRDSKVSSSSSSSKKKKDTDHSRSPSRSVS-- 407
Query: 253 KERSRSGSEKG-------------------LSRSQSNRRMTVSLKSSSRSSEGNKRTPPS 375
KER + +E G SRS S + V +S SRS +K S
Sbjct: 408 KEREHAKAESGQRGSRAEGESEAPNPEPRARSRSTSKSKPNVPAESRSRSKSASKTRSRS 467
Query: 376 RDVS 387
+ S
Sbjct: 468 KSPS 471
Score = 39.7 bits (91), Expect = 0.007
Identities = 23/54 (42%), Positives = 29/54 (53%)
Frame = +1
Query: 115 RDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVSARKERSRSGS 276
R SRS S + + R S+S S + RS+SP R ASRS S + RS S S
Sbjct: 436 RARSRSTSKSKPNVPAESRSRSKSASKTRSRSKSPSRSASRSPSRSRSRSHSRS 489
Score = 32.0 bits (71), Expect = 1.5
Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Frame = +1
Query: 133 ISPKDESRSSFKRD----HSRSVSAKKDRSRSPKREA-SRSVSARKERSRSG-SEKGLSR 294
+S D R+ K D + R + +D+ S +R + SRS S + RSRS S K SR
Sbjct: 148 VSYSDMKRALEKLDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSR 207
Query: 295 SQSNRRMTVSLKSSSRSSEGNKRTPPSRDVS 387
S S++ +S SRS ++ SR S
Sbjct: 208 SGSSKSSHSKSRSRSRSGSHSRSKSRSRSQS 238
Score = 30.4 bits (67), Expect = 4.2
Identities = 36/102 (35%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Frame = +1
Query: 85 KGHSTSASGRR----DHSRSISPK-DESRSSFKRDHSRSVSAKKDRSRSPK---REASRS 240
K S+S+S ++ DHSRS S + R K + + S + S +P R SRS
Sbjct: 382 KVSSSSSSSKKKKDTDHSRSPSRSVSKEREHAKAESGQRGSRAEGESEAPNPEPRARSRS 441
Query: 241 VSARK------ERSRSGS-EKGLSRSQSNRRMTVSLKSSSRS 345
S K RSRS S K SRS+S R S SRS
Sbjct: 442 TSKSKPNVPAESRSRSKSASKTRSRSKSPSRSASRSPSRSRS 483
>sp|Q13247|SFRS6_HUMAN Splicing factor, arginine/serine-rich 6 (Pre-mRNA splicing factor
SRP55)
Length = 344
Score = 50.4 bits (119), Expect = 4e-06
Identities = 38/96 (39%), Positives = 48/96 (50%), Gaps = 2/96 (2%)
Frame = +1
Query: 97 TSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVSARKERSRSGS 276
T +GR P+ R S+ SRS S ++ RSRS + SRS S K RSRS S
Sbjct: 169 TEINGRNIRLIEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRS 228
Query: 277 -EKGLSRSQSNRRMTVS-LKSSSRSSEGNKRTPPSR 378
KG SRS+S R + S KS +S G+ SR
Sbjct: 229 RSKGRSRSRSKGRKSRSKSKSKPKSDRGSHSHSRSR 264
Score = 46.6 bits (109), Expect = 6e-05
Identities = 46/133 (34%), Positives = 55/133 (41%), Gaps = 29/133 (21%)
Frame = +1
Query: 79 PKKGHSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVS-ARK 255
P+ H S SG R SRS R SRS+S + RSRS + SRS S RK
Sbjct: 183 PRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRK 242
Query: 256 ERSRSGS--------------------EKGLSRSQS-----NRRMTVSLKSSSRS---SE 351
RS+S S EK SRS+S N + + KS SRS S
Sbjct: 243 SRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKSKSRSRSQSRSN 302
Query: 352 GNKRTPPSRDVSV 390
PPS+ SV
Sbjct: 303 SPLPVPPSKARSV 315
Score = 41.6 bits (96), Expect = 0.002
Identities = 42/125 (33%), Positives = 52/125 (41%), Gaps = 23/125 (18%)
Frame = +1
Query: 76 SPKKGHSTSASGRRDHSRSISPKDESRS-----SFKRDHSRSVSAKKD---------RSR 213
S + S S S R SRS K S+S S + HS S S KD RSR
Sbjct: 220 SKSRSRSRSRSKGRSRSRSKGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSR 279
Query: 214 SPKREAS---RSVSARKERSRSGS------EKGLSRSQSNRRMTVSLKSSSRSSEGNKRT 366
SPK +S S + +SRS S K S S +R T +S SRS ++
Sbjct: 280 SPKENGKGDIKSKSRSRSQSRSNSPLPVPPSKARSVSPPPKRATSRSRSRSRSKSRSRSR 339
Query: 367 PPSRD 381
SRD
Sbjct: 340 SSSRD 344
>sp|Q13243|SFRS5_HUMAN Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor
SRP40) (Delayed-early protein HRS)
Length = 272
Score = 50.1 bits (118), Expect = 5e-06
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Frame = +1
Query: 85 KGHSTSASGRRDHSRSIS-PKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVSARKER 261
K HS S S R +RS S + SRS ++ +SRS S + RSRS R SRS K +
Sbjct: 181 KRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQ 240
Query: 262 SRSGSEKGLSRSQSNRRMTVSLKSSSRSSEGN 357
R S + S + +R+ + S S GN
Sbjct: 241 KRGSSSRSKSPASVDRQRSRSRSRSRSVDSGN 272
Score = 44.3 bits (103), Expect = 3e-04
Identities = 37/94 (39%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Frame = +1
Query: 106 SGRRDHSRSISPKDES-RSSFKRDHSRSVSAKKDRSRSPKREASR-SVSARKERSRSGSE 279
SG+ + R I + S R S R SRS + RSRS R SR S S + RSRS S
Sbjct: 165 SGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSR 224
Query: 280 KGLSRSQSNRRMTVSLKSSSRSSEGNKRTPPSRD 381
S+S+S R V KS R S ++P S D
Sbjct: 225 ---SKSRSVSRSPVPEKSQKRGSSSRSKSPASVD 255
Score = 32.0 bits (71), Expect = 1.5
Identities = 26/60 (43%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +1
Query: 76 SPKKGHSTSASGRRDHSRSISPKDESRSSFKR-DHSRSVS-AKKDRSRSPKREASRSVSA 249
S + S S S R SRS+S S KR SRS S A DR RS R SRSV +
Sbjct: 211 SYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSKSPASVDRQRSRSRSRSRSVDS 270
Score = 30.8 bits (68), Expect = 3.2
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +1
Query: 154 RSSFKRDHSRSVSAKKDRSRSPKREASRSVSARKERSRSGSEKGLSRSQSNRRMTVS-LK 330
+++ ++ + ++ +K + + SRS S + R+RS S + SRS+S R + S +
Sbjct: 158 KNAIEKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRS-SSRSRSRSRSRSRKSYSRSR 216
Query: 331 SSSRSSEGNKRTPPSRDVSVEK 396
S SRS +K SR EK
Sbjct: 217 SRSRSRSRSKSRSVSRSPVPEK 238
>sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 (RNA-binding
protein srp-5) (CeSRp75)
Length = 312
Score = 50.1 bits (118), Expect = 5e-06
Identities = 32/86 (37%), Positives = 44/86 (51%)
Frame = +1
Query: 121 HSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVSARKERSRSGSEKGLSRSQ 300
+ R I D+S++ R S S S + RSR +R SRS S K RSRS ++ S+
Sbjct: 191 NGRKIKMIDDSQAGRSRSRSNSRSRSRSRSRDRRRSRSRSSSRSKSRSRSPPKRSRRESK 250
Query: 301 SNRRMTVSLKSSSRSSEGNKRTPPSR 378
S R +S SRS++ K PSR
Sbjct: 251 SKSRS----RSRSRSADNRKSRSPSR 272
Score = 43.9 bits (102), Expect = 4e-04
Identities = 41/94 (43%), Positives = 47/94 (50%)
Frame = +1
Query: 88 GHSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVSARKERSR 267
G S S S R SRS S +D RS SRS S K RSRSP + SR S K RSR
Sbjct: 204 GRSRSRSNSRSRSRSRS-RDRRRS-----RSRSSSRSKSRSRSPPKR-SRRESKSKSRSR 256
Query: 268 SGSEKGLSRSQSNRRMTVSLKSSSRSSEGNKRTP 369
S SRS NR+ +S SRS + R+P
Sbjct: 257 S-----RSRSADNRKS----RSPSRSPKKVDRSP 281
Score = 43.1 bits (100), Expect = 6e-04
Identities = 39/96 (40%), Positives = 45/96 (46%)
Frame = +1
Query: 76 SPKKGHSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVSARK 255
S + S S RR SRS S + +SRS SR S K RSRS SRS RK
Sbjct: 212 SRSRSRSRSRDRRRSRSRS-SSRSKSRSRSPPKRSRRESKSKSRSRS----RSRSADNRK 266
Query: 256 ERSRSGSEKGLSRSQSNRRMTVSLKSSSRSSEGNKR 363
RS S S K + RS S R S S S +G+ R
Sbjct: 267 SRSPSRSPKKVDRSPSPPR-----GSRSPSEKGSPR 297
Score = 34.7 bits (78), Expect = 0.22
Identities = 33/84 (39%), Positives = 36/84 (42%), Gaps = 17/84 (20%)
Frame = +1
Query: 76 SPKKGHSTSASGRRDHSRSISPKDESRSSFK---RDHSRSVSAKKDRSRSPKRE------ 228
S + S S S R SRS SP SR K R SRS SA +SRSP R
Sbjct: 220 SRDRRRSRSRSSSRSKSRSRSPPKRSRRESKSKSRSRSRSRSADNRKSRSPSRSPKKVDR 279
Query: 229 ------ASRSVSAR--KERSRSGS 276
SRS S + RSRS S
Sbjct: 280 SPSPPRGSRSPSEKGSPRRSRSAS 303
>sp|Q8WXA9|SFR12_HUMAN Splicing factor, arginine/serine-rich 12 (Serine-arginine-rich
splicing regulatory protein 86) (SRrp86) (Splicing
regulatory protein 508) (SRrp508)
Length = 508
Score = 48.5 bits (114), Expect = 2e-05
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 1/105 (0%)
Frame = +1
Query: 82 KKGHSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRS-VSARKE 258
++ S+S RR SRS S + + KR SRS S + + KRE R +S R+E
Sbjct: 372 RRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRE 431
Query: 259 RSRSGSEKGLSRSQSNRRMTVSLKSSSRSSEGNKRTPPSRDVSVE 393
R RS S + S + + +S + E NK P VS E
Sbjct: 432 RERSTSMRKSSNDRDGKEKLEKNSTSLKEKEHNKE--PDSSVSKE 474
Score = 44.3 bits (103), Expect = 3e-04
Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Frame = +1
Query: 94 STSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKD--RSRSPKREASRSVSARKERSR 267
S S S + HSR + + RS R H+RS S +KD RS+SP ++ S+S RK RSR
Sbjct: 198 SKSRSSSKSHSRRKRSQSKHRS---RSHNRSRSRQKDRRRSKSPHKKRSKSRERRKSRSR 254
Query: 268 SGSEKGLSRSQSNRRMTVSLKSSSRSSE 351
S S ++ + +K R E
Sbjct: 255 SHSRDKRKDTREKIKEKERVKEKDREKE 282
Score = 42.7 bits (99), Expect = 8e-04
Identities = 39/117 (33%), Positives = 52/117 (44%), Gaps = 11/117 (9%)
Frame = +1
Query: 79 PKKGHSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREAS------RS 240
P+ G S G R S + + +SRSS K R S K RSRS R S RS
Sbjct: 179 PESGKSNERKGGRSRSHT---RSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRS 235
Query: 241 VSARKERSRSGSEKGLSRSQSNRR-----MTVSLKSSSRSSEGNKRTPPSRDVSVEK 396
S K+RS+S E+ SRS+S+ R +K R E ++ R+ EK
Sbjct: 236 KSPHKKRSKS-RERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREK 291
Score = 35.0 bits (79), Expect = 0.17
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Frame = +1
Query: 82 KKGHSTSASGRRDHSRSIS-PKDESRS-SFKRDHSRSVSAKKDRSRSPKREASRSVSARK 255
++ S S R H+RS S KD RS S + S+S +K RSRS R+ + +
Sbjct: 209 RRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKI 268
Query: 256 ERSRSGSEKGLSRSQSNRRMTVSLKSSSRSSEGNKRTPPSRDVSVEK 396
+ EK + + + K ++ + +K R+ EK
Sbjct: 269 KEKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDREKDKEK 315
Score = 33.1 bits (74), Expect = 0.65
Identities = 24/75 (32%), Positives = 35/75 (46%)
Frame = +1
Query: 157 SSFKRDHSRSVSAKKDRSRSPKREASRSVSARKERSRSGSEKGLSRSQSNRRMTVSLKSS 336
++ + + +S K RSRS R SRS S K SR + RS+S+ R K
Sbjct: 175 AAIEPESGKSNERKGGRSRSHTRSKSRSSS--KSHSRRKRSQSKHRSRSHNRSRSRQKDR 232
Query: 337 SRSSEGNKRTPPSRD 381
RS +K+ SR+
Sbjct: 233 RRSKSPHKKRSKSRE 247
Score = 32.0 bits (71), Expect = 1.5
Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Frame = +1
Query: 115 RDHSRSISPKDESRSSFK-RDHSRSVSAKKDRSRSPKREASRSVSARKERSRSGSEKGLS 291
RD R KD + K R+ R +KDR + ++E + K+RS+ EK
Sbjct: 301 RDKERE---KDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKK 357
Query: 292 RSQSN---RRMTVSLKSSSRSSEGNKR 363
+S R S +S S S E +R
Sbjct: 358 DKKSRTPPRSYNASRRSRSSSRERRRR 384
Score = 31.6 bits (70), Expect = 1.9
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +1
Query: 178 SRSVSAKKDRSRSPKREASRSVSARKERSRSGSEKGLSRSQSNRRMTVSLKSSSRSSEGN 357
S ++ + +S K SRS + K RS S S RSQS R +S SR +
Sbjct: 174 SAAIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRR 233
Query: 358 KRTPPSR 378
+ P +
Sbjct: 234 RSKSPHK 240
Score = 31.6 bits (70), Expect = 1.9
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 14/108 (12%)
Frame = +1
Query: 82 KKGHSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSP----------KREA 231
+K S +R + S ++ +R S S ++ RSRS KR++
Sbjct: 344 EKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKS 403
Query: 232 SRSVSAR----KERSRSGSEKGLSRSQSNRRMTVSLKSSSRSSEGNKR 363
SRS S R K++ R +S + R T S++ SS +G ++
Sbjct: 404 SRSPSPRSRNKKDKKREKERDHISERRERERST-SMRKSSNDRDGKEK 450
Score = 30.4 bits (67), Expect = 4.2
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
Frame = +1
Query: 115 RDHSRSISPKDESRSSFKRDHSRSVSAKKDR---SRSPKRE---ASRSVSARKERSRSGS 276
+D + + + ++D S+ + K+ + SR+P R + RS S+ +ER R S
Sbjct: 327 KDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRS 386
Query: 277 EKGLSRSQSNRRMTVSLKSSSRSSEGNKRTPPSRDVSVEK 396
S S+S R + SSRS R + E+
Sbjct: 387 R---SSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKER 423
>sp|Q05519|SFR11_HUMAN Splicing factor arginine/serine-rich 11 (Arginine-rich 54 kDa
nuclear protein) (p54)
Length = 484
Score = 47.8 bits (112), Expect = 3e-05
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
Frame = +1
Query: 82 KKGHSTSASGRRDHSRSISPKDESRSSFK---RDHSRSVSAKKDRSRSPKREASRSVSAR 252
KK + +S S SRS+ + R SRS + + RSPKR+ SRS S R
Sbjct: 313 KKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPR 372
Query: 253 KERSRSGSEKGLSRSQSNRRMTVSLKSSSRSSEGNKRTPPSRDVSVEKI 399
+ + +K RS+ R + S K S+ E ++ D V+++
Sbjct: 373 RHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERKSESDKDVKQV 421
Score = 43.1 bits (100), Expect = 6e-04
Identities = 31/87 (35%), Positives = 37/87 (42%)
Frame = +1
Query: 112 RRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVSARKERSRSGSEKGLS 291
+R HSRS S R+ H RS S + RS S R RS S R+ RS S S
Sbjct: 245 KRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRS 304
Query: 292 RSQSNRRMTVSLKSSSRSSEGNKRTPP 372
RS S R K + +TPP
Sbjct: 305 RSTSKTRD----KKKEDKEKKRSKTPP 327
Score = 35.4 bits (80), Expect = 0.13
Identities = 27/91 (29%), Positives = 40/91 (43%)
Frame = +1
Query: 124 SRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVSARKERSRSGSEKGLSRSQS 303
S +I P D+ + SRS S ++ S + SRS S R+ S+S S + RS+S
Sbjct: 234 SAAIEP-DKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRSRR---RSKS 289
Query: 304 NRRMTVSLKSSSRSSEGNKRTPPSRDVSVEK 396
RR + R S +T + EK
Sbjct: 290 PRRRRSHSRERGRRSRSTSKTRDKKKEDKEK 320
Score = 34.3 bits (77), Expect = 0.29
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 3/111 (2%)
Frame = +1
Query: 73 ASPKKGHSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSA---KKDRSRSPKREASRSV 243
++ ++ S S RR SRS + + S KR SRS S KK++ + +E SR
Sbjct: 331 STARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERSRD- 389
Query: 244 SARKERSRSGSEKGLSRSQSNRRMTVSLKSSSRSSEGNKRTPPSRDVSVEK 396
+ERS S +K + + R + S K + + D EK
Sbjct: 390 --ERERSTSKKKKSKDKEKDRERKSESDKDVKQVTRDYDEEEQGYDSEKEK 438
>sp|Q6PDU1|SFRS2_RAT Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa)
sp|Q62093|SFRS2_MOUSE Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa) (PR264 protein)
sp|Q01130|SFRS2_HUMAN Splicing factor, arginine/serine-rich 2 (Splicing factor SC35)
(SC-35) (Splicing component, 35 kDa) (PR264 protein)
Length = 221
Score = 47.8 bits (112), Expect = 3e-05
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Frame = +1
Query: 88 GHSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVSARKERSR 267
G + + RR SRS S + SRS + +SRS S + RSRS R S+S SAR+ +S+
Sbjct: 116 GRRSRSPRRRRRSRSRS-RSRSRSRSRSRYSRSKSRSRTRSRS--RSTSKSRSARRSKSK 172
Query: 268 SGS---EKGLSRSQSNRRMTVSLKSSSRSSEGNKRTPP 372
S S + SRS+S R + S ++PP
Sbjct: 173 SSSVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPP 210
Score = 43.1 bits (100), Expect = 6e-04
Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = +1
Query: 82 KKGHSTSASGRRDHSRSISPKDESRSSFK-RDHSRSVSAKKDRSRSPKREASRSVSARKE 258
++ S S S R SRS + +SRS + R S S S RS+S SRS S +
Sbjct: 126 RRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRS 185
Query: 259 RSRSGSEKGLSRSQSNRRMTVSLKSSSRSSEG 354
RSRS S +S+ +S R S EG
Sbjct: 186 RSRSRSPPPVSKRESKSRSRSKSPPKSPEEEG 217
Score = 36.2 bits (82), Expect = 0.077
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Frame = +1
Query: 205 RSRSPKREA-----SRSVSARKERSRSGSEKGLSRSQSNRRMTVSLKSSSRSSEGNKRTP 369
RSRSP+R SRS S + RSR K SR++S R T +S+ RS +
Sbjct: 118 RSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVS 177
Query: 370 PSRDVS 387
SR S
Sbjct: 178 RSRSRS 183
Score = 34.3 bits (77), Expect = 0.29
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Frame = +1
Query: 76 SPKKGHSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSP----KREASRSV 243
S K S + S R S+S S + S SRS S + RSRSP KRE S+S
Sbjct: 145 SRSKSRSRTRSRSRSTSKSRSARRSKSKSSSVSRSRSRSRSRSRSRSPPPVSKRE-SKSR 203
Query: 244 SARKERSRSGSEKG 285
S K +S E+G
Sbjct: 204 SRSKSPPKSPEEEG 217
>sp|Q4P0G6|CWC21_USTMA Pre-mRNA splicing factor CWC21
Length = 348
Score = 47.4 bits (111), Expect = 3e-05
Identities = 33/71 (46%), Positives = 39/71 (54%)
Frame = +1
Query: 91 HSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVSARKERSRS 270
+S+ +S R SRS SP SRSS R SRS S + RSRSP + S S RSRS
Sbjct: 254 YSSYSSRSRSRSRSRSPLSHSRSS--RSRSRSRSRSRSRSRSPLSHSRSSRSRSPSRSRS 311
Query: 271 GSEKGLSRSQS 303
S SRS+S
Sbjct: 312 PSRCASSRSRS 322
Score = 47.0 bits (110), Expect = 4e-05
Identities = 41/108 (37%), Positives = 51/108 (47%), Gaps = 3/108 (2%)
Frame = +1
Query: 73 ASPKKGHSTSASGRRDHS-RSISPKDESRSSFKR--DHSRSVSAKKDRSRSPKREASRSV 243
+SP + + S S +D S RS S RS R H S S+ RSRS R S
Sbjct: 213 SSPPRKRARSRSASQDSSARSSSSHASPRSPTPRTTSHVASYSSYSSRSRSRSRSRSPLS 272
Query: 244 SARKERSRSGSEKGLSRSQSNRRMTVSLKSSSRSSEGNKRTPPSRDVS 387
+R RSRS S SRS+S R +S SSRS ++ PSR S
Sbjct: 273 HSRSSRSRSRSR---SRSRSRSRSPLSHSRSSRSRSPSRSRSPSRCAS 317
Score = 36.2 bits (82), Expect = 0.077
Identities = 34/105 (32%), Positives = 43/105 (40%), Gaps = 16/105 (15%)
Frame = +1
Query: 121 HSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVSAR-------------KER 261
HS+S S S KR SRS S S + RS + R + R
Sbjct: 203 HSQSTSSSSPSSPPRKRARSRSASQDSSARSSSSHASPRSPTPRTTSHVASYSSYSSRSR 262
Query: 262 SRSGSEKGLSRSQSNR---RMTVSLKSSSRSSEGNKRTPPSRDVS 387
SRS S LS S+S+R R +S SRS + R+ SR S
Sbjct: 263 SRSRSRSPLSHSRSSRSRSRSRSRSRSRSRSPLSHSRSSRSRSPS 307
Score = 33.1 bits (74), Expect = 0.65
Identities = 27/100 (27%), Positives = 43/100 (43%)
Frame = +1
Query: 79 PKKGHSTSASGRRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVSARKE 258
P + ST + S S P+ +RS R S+ SA+ S + R + ++
Sbjct: 196 PARCSSTHSQSTSSSSPSSPPRKRARS---RSASQDSSARSSSSHASPRSPTPRTTSHVA 252
Query: 259 RSRSGSEKGLSRSQSNRRMTVSLKSSSRSSEGNKRTPPSR 378
S S + SRS+S ++ S S SRS ++ SR
Sbjct: 253 SYSSYSSRSRSRSRSRSPLSHSRSSRSRSRSRSRSRSRSR 292
Score = 30.0 bits (66), Expect = 5.5
Identities = 26/85 (30%), Positives = 35/85 (41%)
Frame = +1
Query: 112 RRDHSRSISPKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVSARKERSRSGSEKGLS 291
R H+ S P + HS+S S+ S KR SRS S + +RS S
Sbjct: 183 RASHA-STQPPPHPPARCSSTHSQSTSSSSPSSPPRKRARSRSAS-QDSSARSSSSHASP 240
Query: 292 RSQSNRRMTVSLKSSSRSSEGNKRT 366
RS + R + SS SS R+
Sbjct: 241 RSPTPRTTSHVASYSSYSSRSRSRS 265
Score = 29.3 bits (64), Expect = 9.4
Identities = 24/83 (28%), Positives = 33/83 (39%)
Frame = +1
Query: 139 PKDESRSSFKRDHSRSVSAKKDRSRSPKREASRSVSARKERSRSGSEKGLSRSQSNRRMT 318
P S+ + S S + R R+ R AS+ SAR S + R+ S+
Sbjct: 195 PPARCSSTHSQSTSSSSPSSPPRKRARSRSASQDSSARSSSSHASPRSPTPRTTSHVASY 254
Query: 319 VSLKSSSRSSEGNKRTPPSRDVS 387
S S SR S R+P S S
Sbjct: 255 SSYSSRSR-SRSRSRSPLSHSRS 276
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,942,516
Number of Sequences: 369166
Number of extensions: 1076971
Number of successful extensions: 6919
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5515
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5462583840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)