Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_J21-2
(406 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46782|RS5_HUMAN 40S ribosomal protein S5 >gi|71153729|s... 187 9e-48
sp|P97461|RS5_MOUSE 40S ribosomal protein S5 187 9e-48
sp|P24050|RS5_RAT 40S ribosomal protein S5 182 2e-46
sp|Q24186|RS5A_DROME 40S ribosomal protein S5a 179 2e-45
sp|P49041|RS5_CAEEL 40S ribosomal protein S5 172 2e-43
sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b 171 7e-43
sp|Q08364|RS5_PODCA 40S ribosomal protein S5 169 1e-42
sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1 163 1e-40
sp|O65731|RS5_CICAR 40S ribosomal protein S5 163 1e-40
sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2 162 3e-40
>sp|P46782|RS5_HUMAN 40S ribosomal protein S5
sp|Q5E988|RS5_BOVIN 40S ribosomal protein S5
Length = 204
Score = 187 bits (474), Expect = 9e-48
Identities = 91/134 (67%), Positives = 103/134 (76%)
Frame = +3
Query: 3 DFKLFNKWSTEDVHTTDLSLTDYINYRGKYAKIIPHSAGRYQTKRFRKAQCPIVERLACS 182
D KLF KWST+DV D+SL DYI + KYAK +PHSAGRY KRFRKAQCPIVERL S
Sbjct: 16 DIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNS 75
Query: 183 LMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVK 362
+MMHGR HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+
Sbjct: 76 MMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVR 135
Query: 363 RQAVDVSPLRRVNK 404
RQAVDVSPLRRVN+
Sbjct: 136 RQAVDVSPLRRVNQ 149
>sp|P97461|RS5_MOUSE 40S ribosomal protein S5
Length = 204
Score = 187 bits (474), Expect = 9e-48
Identities = 91/134 (67%), Positives = 103/134 (76%)
Frame = +3
Query: 3 DFKLFNKWSTEDVHTTDLSLTDYINYRGKYAKIIPHSAGRYQTKRFRKAQCPIVERLACS 182
D KLF KWST+DV D+SL DYI + KYAK +PHSAGRY KRFRKAQCPIVERL S
Sbjct: 16 DIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVERLTNS 75
Query: 183 LMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVK 362
+MMHGR HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+
Sbjct: 76 MMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVR 135
Query: 363 RQAVDVSPLRRVNK 404
RQAVDVSPLRRVN+
Sbjct: 136 RQAVDVSPLRRVNQ 149
>sp|P24050|RS5_RAT 40S ribosomal protein S5
Length = 204
Score = 182 bits (462), Expect = 2e-46
Identities = 89/134 (66%), Positives = 101/134 (75%)
Frame = +3
Query: 3 DFKLFNKWSTEDVHTTDLSLTDYINYRGKYAKIIPHSAGRYQTKRFRKAQCPIVERLACS 182
D KLF KWST+DV D+SL DYI + KYAK +PHSAGRY FRKAQCPIVERL S
Sbjct: 16 DIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAANGFRKAQCPIVERLTNS 75
Query: 183 LMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVK 362
+MMHGR HAFE+IHL+TGENP+Q++VNAI NSG REDSTRIGR G V+
Sbjct: 76 MMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGpreDSTRIGRAGTVR 135
Query: 363 RQAVDVSPLRRVNK 404
RQAVDVSPLRRVN+
Sbjct: 136 RQAVDVSPLRRVNQ 149
>sp|Q24186|RS5A_DROME 40S ribosomal protein S5a
Length = 228
Score = 179 bits (454), Expect = 2e-45
Identities = 85/134 (63%), Positives = 103/134 (76%)
Frame = +3
Query: 3 DFKLFNKWSTEDVHTTDLSLTDYINYRGKYAKIIPHSAGRYQTKRFRKAQCPIVERLACS 182
+ KLF +WS +DV D+SL DYI+ + K+A+ +PHSAGRY KRFRKAQCPIVERL CS
Sbjct: 40 EIKLFGRWSCDDVTVNDISLQDYISVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTCS 99
Query: 183 LMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVK 362
LMM GR H+FE+IHL+TGENP+Q++V+AI NSG REDSTRIGR G V+
Sbjct: 100 LMMKGRNNGKKLMACRIVKHSFEIIHLLTGENPLQILVSAIINSGpreDSTRIGRAGTVR 159
Query: 363 RQAVDVSPLRRVNK 404
RQAVDVSPLRRVN+
Sbjct: 160 RQAVDVSPLRRVNQ 173
>sp|P49041|RS5_CAEEL 40S ribosomal protein S5
Length = 210
Score = 172 bits (436), Expect = 2e-43
Identities = 83/131 (63%), Positives = 101/131 (77%)
Frame = +3
Query: 12 LFNKWSTEDVHTTDLSLTDYINYRGKYAKIIPHSAGRYQTKRFRKAQCPIVERLACSLMM 191
LF KWS + V+ +D+SL DYI + K AK +PHSAGR+Q +RFRKA CPIVERLA SLMM
Sbjct: 25 LFGKWSLQSVNVSDISLVDYIPVKEKSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMM 84
Query: 192 HGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVKRQA 371
HGR HAFE+I+L+TGENP+Q++VNA+ NSG REDSTRIGR G V+RQA
Sbjct: 85 HGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGpreDSTRIGRAGTVRRQA 144
Query: 372 VDVSPLRRVNK 404
VDV+PLRRVN+
Sbjct: 145 VDVAPLRRVNQ 155
>sp|Q9VFE4|RS5B_DROME 40S ribosomal protein S5b
Length = 230
Score = 171 bits (432), Expect = 7e-43
Identities = 82/134 (61%), Positives = 99/134 (73%)
Frame = +3
Query: 3 DFKLFNKWSTEDVHTTDLSLTDYINYRGKYAKIIPHSAGRYQTKRFRKAQCPIVERLACS 182
+ KLF +W+ +D+ +D+SL DYI + K+A+ +PHSAGRY KRFRKAQCPIVERL
Sbjct: 42 EIKLFGRWACDDISISDISLQDYIAVKEKFARYLPHSAGRYAAKRFRKAQCPIVERLTSG 101
Query: 183 LMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVK 362
LMM GR HAFE+IHL+T ENP+Q+ VNAI NSG REDSTRIGR G V+
Sbjct: 102 LMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGpreDSTRIGRAGTVR 161
Query: 363 RQAVDVSPLRRVNK 404
RQAVDVSPLRRVN+
Sbjct: 162 RQAVDVSPLRRVNQ 175
>sp|Q08364|RS5_PODCA 40S ribosomal protein S5
Length = 210
Score = 169 bits (429), Expect = 1e-42
Identities = 82/134 (61%), Positives = 99/134 (73%)
Frame = +3
Query: 3 DFKLFNKWSTEDVHTTDLSLTDYINYRGKYAKIIPHSAGRYQTKRFRKAQCPIVERLACS 182
D KLF KW E ++ +D+SLTDYI + +A +PH+A RY KRFRKAQCPIVERL S
Sbjct: 22 DIKLFGKWPLEGLNISDISLTDYIAVKDNHAVYLPHTAARYAVKRFRKAQCPIVERLTNS 81
Query: 183 LMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAVK 362
LMMHGR H+FE++HL+TGENP+QL+ AISNSG REDSTRIGR G V+
Sbjct: 82 LMMHGRNNGKKLMAVRIVRHSFEIMHLLTGENPLQLVCEAISNSGpreDSTRIGRAGTVR 141
Query: 363 RQAVDVSPLRRVNK 404
RQAVDV+PLRRVN+
Sbjct: 142 RQAVDVAPLRRVNQ 155
>sp|Q9ZUT9|RS5A_ARATH 40S ribosomal protein S5-1
Length = 207
Score = 163 bits (413), Expect = 1e-40
Identities = 80/135 (59%), Positives = 99/135 (73%), Gaps = 1/135 (0%)
Frame = +3
Query: 3 DFKLFNKWSTEDVHTTDLSLTDYINYR-GKYAKIIPHSAGRYQTKRFRKAQCPIVERLAC 179
+ KLFN+WS +DV TD+SL DYI + K+A +PH+AGRY KRFRKAQCPIVERL
Sbjct: 18 EVKLFNRWSFDDVSVTDISLVDYIGVQPSKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77
Query: 180 SLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAV 359
SLMMHGR HA E+IHL++ NPIQ++++AI NSG RED+TRIG G V
Sbjct: 78 SLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAGVV 137
Query: 360 KRQAVDVSPLRRVNK 404
+RQAVD+SPLRRVN+
Sbjct: 138 RRQAVDISPLRRVNQ 152
>sp|O65731|RS5_CICAR 40S ribosomal protein S5
Length = 197
Score = 163 bits (412), Expect = 1e-40
Identities = 80/135 (59%), Positives = 99/135 (73%), Gaps = 1/135 (0%)
Frame = +3
Query: 3 DFKLFNKWSTEDVHTTDLSLTDYINY-RGKYAKIIPHSAGRYQTKRFRKAQCPIVERLAC 179
+ KLFN+WS +DV +D+SL DYI K+A +PH+AGRY KRFRKAQCPIVERL
Sbjct: 8 EVKLFNRWSFDDVQLSDVSLIDYIGVVPSKHATYVPHTAGRYSVKRFRKAQCPIVERLTN 67
Query: 180 SLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAV 359
SLMMHGR HA E+IHL+T +NPIQ++V+A+ NSG RED+TRIG G V
Sbjct: 68 SLMMHGRNNGKKLMAVRIIKHAMEIIHLLTDQNPIQVIVDAVVNSGpreDATRIGSAGVV 127
Query: 360 KRQAVDVSPLRRVNK 404
+RQAVD+SPLRRVN+
Sbjct: 128 RRQAVDISPLRRVNQ 142
>sp|P51427|RS5B_ARATH 40S ribosomal protein S5-2
Length = 207
Score = 162 bits (409), Expect = 3e-40
Identities = 79/135 (58%), Positives = 99/135 (73%), Gaps = 1/135 (0%)
Frame = +3
Query: 3 DFKLFNKWSTEDVHTTDLSLTDYINYRG-KYAKIIPHSAGRYQTKRFRKAQCPIVERLAC 179
+ KLFN+W+ +DV TD+SL DYI + K+A +PH+AGRY KRFRKAQCPIVERL
Sbjct: 18 EVKLFNRWTYDDVTVTDISLVDYIGVQAAKHATFVPHTAGRYSVKRFRKAQCPIVERLTN 77
Query: 180 SLMMHGRXXXXXXXXXXXXXHAFELIHLMTGENPIQLMVNAISNSGAREDSTRIGRGGAV 359
SLMMHGR HA E+IHL++ NPIQ++++AI NSG RED+TRIG G V
Sbjct: 78 SLMMHGRNNGKKLMAVRIVKHAMEIIHLLSDLNPIQVIIDAIVNSGpreDATRIGSAGVV 137
Query: 360 KRQAVDVSPLRRVNK 404
+RQAVD+SPLRRVN+
Sbjct: 138 RRQAVDISPLRRVNQ 152
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,388,997
Number of Sequences: 369166
Number of extensions: 810615
Number of successful extensions: 1916
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1879
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1809034200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)