Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_J21-1
(236 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O67658|MVIN_AQUAE Virulence factor mviN homolog 31 0.78
sp|P59311|ARGC_STRMU N-acetyl-gamma-glutamyl-phosphate redu... 29 3.0
sp|Q19550|SRA28_CAEEL Serpentine receptor class alpha-28 (P... 29 3.9
sp|Q8WKL8|MATK_POPNI Maturase K (Intron maturase) 28 5.1
sp|P33381|Y209_LISMO Hypothetical protein Lmo0209 28 6.6
sp|Q10164|RGA2_SCHPO Probable Rho-type GTPase-activating pr... 28 6.6
sp|O28955|YD14_ARCFU Hypothetical protein AF1314 28 6.6
>sp|O67658|MVIN_AQUAE Virulence factor mviN homolog
Length = 499
Score = 31.2 bits (69), Expect = 0.78
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = -2
Query: 184 TEHLINNWLFLISFSALNNLFNSIYFNAKHPLFLSNTGFL*TSCNVLFEYFFVFL*N 14
T L++ + F + F +L ++ ++Y++ K+ + + FL LF F+FL N
Sbjct: 338 TSGLLSLYAFSVPFYSLQHILKTVYYSKKNVEIPTKSAFLSVFLEALFGSVFIFLLN 394
>sp|P59311|ARGC_STRMU N-acetyl-gamma-glutamyl-phosphate reductase (AGPR)
(N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA
dehydrogenase)
Length = 340
Score = 29.3 bits (64), Expect = 3.0
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 21 RKTKKYSNNTLHDVYKKPVFDRNKGCLALKYIELNKLLSAEKLIK 155
++ K++ NN H + + N+G +A Y+ L K LS E + K
Sbjct: 213 QELKRFDNNLEHIQFSTSLLPVNRGIMATCYVTLKKPLSNEAVSK 257
>sp|Q19550|SRA28_CAEEL Serpentine receptor class alpha-28 (Protein sra-28)
Length = 341
Score = 28.9 bits (63), Expect = 3.9
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 141 LRLITYSIRYISMLNILCFYQIQVFYKHHVTYYLSIFSFFC 19
LR ++I Y S + F Q F+ ++ YY ++FS FC
Sbjct: 77 LRAFYHAIVYASDPCAILFQSSQCFFDGNLYYYTNLFSSFC 117
>sp|Q8WKL8|MATK_POPNI Maturase K (Intron maturase)
Length = 510
Score = 28.5 bits (62), Expect = 5.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -3
Query: 66 YKHHVTYYLSIFSFFCKTSFPF 1
Y HV Y S+F F CK SF F
Sbjct: 213 YNSHVYEYESVFFFLCKQSFHF 234
>sp|P33381|Y209_LISMO Hypothetical protein Lmo0209
Length = 224
Score = 28.1 bits (61), Expect = 6.6
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Frame = +3
Query: 84 RNKGC------LALKYIELNKLLSAEKLIKNNQLFIK 176
RN GC LK +L K++ EKL KN++L +K
Sbjct: 24 RNHGCPDSLDLYGLKIGDLKKIIRREKLTKNHELAVK 60
>sp|Q10164|RGA2_SCHPO Probable Rho-type GTPase-activating protein 2
Length = 1275
Score = 28.1 bits (61), Expect = 6.6
Identities = 16/40 (40%), Positives = 23/40 (57%)
Frame = +3
Query: 51 LHDVYKKPVFDRNKGCLALKYIELNKLLSAEKLIKNNQLF 170
LHDV+ P K + LKYIE + L+S +K+N L+
Sbjct: 709 LHDVFFLPPEHAQKEGVLLKYIENSGLVSRYFYLKDNILY 748
>sp|O28955|YD14_ARCFU Hypothetical protein AF1314
Length = 215
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +3
Query: 75 VFDRNKGCLALKYIELNKLLSAEKLIKNNQLFIKCSVHV 191
+ DRN CLA++ ++L ++ S E+ +K + F+K + +
Sbjct: 27 IIDRNPECLAMRELDLVRVDSIEE-VKEGRYFLKGGIEI 64
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,994,698
Number of Sequences: 369166
Number of extensions: 367953
Number of successful extensions: 966
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 68,354,980
effective HSP length: 49
effective length of database: 59,302,965
effective search space used: 1719785985
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)