Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_J16
(519 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q16740|CLPP_HUMAN Putative ATP-dependent Clp protease pr... 216 3e-56
sp|O88696|CLPP_MOUSE Putative ATP-dependent Clp protease pr... 214 1e-55
sp|Q27539|CLPP_CAEEL Probable ClpP-like protease (Endopepti... 201 7e-52
sp|O87706|CLPP_CAUCR ATP-dependent Clp protease proteolytic... 196 4e-50
sp|Q89KG1|CLPP2_BRAJA ATP-dependent Clp protease proteolyti... 192 3e-49
sp|Q6N5L3|CLPP_RHOPA ATP-dependent Clp protease proteolytic... 191 7e-49
sp|Q5GS83|CLPP_WOLTR ATP-dependent Clp protease proteolytic... 191 1e-48
sp|Q92HM5|CLPP_RICCN ATP-dependent Clp protease proteolytic... 189 3e-48
sp|Q8G0I4|CLPP_BRUSU ATP-dependent Clp protease proteolytic... 189 3e-48
sp|Q68WL5|CLPP_RICTY ATP-dependent Clp protease proteolytic... 189 3e-48
>sp|Q16740|CLPP_HUMAN Putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial precursor (Endopeptidase Clp)
Length = 277
Score = 216 bits (549), Expect = 3e-56
Identities = 99/149 (66%), Positives = 126/149 (84%)
Frame = +1
Query: 70 SSNVMTSMPYVIEQTNAGERVYDVFSRLLKDRIICLMEPVNDGMASVIVAQLLFLHSESS 249
++ + +P V+EQT GER YD++SRLL++RI+C+M P++D +AS+++AQLLFL SES+
Sbjct: 52 ATRALPLIPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESN 111
Query: 250 KTPIQMYINSPGGSVTAGMAIYDTMQHIQNPISTWCIGQACSMGSFLLCAGTPGMRYSLP 429
K PI MYINSPGG VTAG+AIYDTMQ+I NPI TWC+GQA SMGS LL AGTPGMR+SLP
Sbjct: 112 KKPIHMYINSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGTPGMRHSLP 171
Query: 430 NSRIMVHQPSGIARGQVSDILIHAEELIE 516
NSRIM+HQPSG ARGQ +DI I AEE+++
Sbjct: 172 NSRIMIHQPSGGARGQATDIAIQAEEIMK 200
>sp|O88696|CLPP_MOUSE Putative ATP-dependent Clp protease proteolytic subunit,
mitochondrial precursor (Endopeptidase Clp)
Length = 272
Score = 214 bits (544), Expect = 1e-55
Identities = 98/142 (69%), Positives = 123/142 (86%)
Frame = +1
Query: 91 MPYVIEQTNAGERVYDVFSRLLKDRIICLMEPVNDGMASVIVAQLLFLHSESSKTPIQMY 270
+P V+EQT GER YD++SRLL++RI+C+M P++D +AS+++AQLLFL SES+K PI MY
Sbjct: 55 IPIVVEQTGRGERAYDIYSRLLRERIVCVMGPIDDSVASLVIAQLLFLQSESNKKPIHMY 114
Query: 271 INSPGGSVTAGMAIYDTMQHIQNPISTWCIGQACSMGSFLLCAGTPGMRYSLPNSRIMVH 450
INSPGG VTAG+AIYDTMQ+I NPI TWC+GQA SMGS LL AG+PGMR+SLPNSRIM+H
Sbjct: 115 INSPGGVVTAGLAIYDTMQYILNPICTWCVGQAASMGSLLLAAGSPGMRHSLPNSRIMIH 174
Query: 451 QPSGIARGQVSDILIHAEELIE 516
QPSG ARGQ +DI I AEE+++
Sbjct: 175 QPSGGARGQATDIAIQAEEIMK 196
>sp|Q27539|CLPP_CAEEL Probable ClpP-like protease (Endopeptidase Clp)
Length = 206
Score = 201 bits (512), Expect = 7e-52
Identities = 99/148 (66%), Positives = 117/148 (79%)
Frame = +1
Query: 67 ASSNVMTSMPYVIEQTNAGERVYDVFSRLLKDRIICLMEPVNDGMASVIVAQLLFLHSES 246
AS +P+VI+ GER YD++SRLL+DRI+CLM PV+D +AS ++AQLLFL SES
Sbjct: 3 ASVQSRVGIPFVIDNEGKGERTYDIYSRLLRDRIVCLMTPVDDFIASALIAQLLFLQSES 62
Query: 247 SKTPIQMYINSPGGSVTAGMAIYDTMQHIQNPISTWCIGQACSMGSFLLCAGTPGMRYSL 426
K PI MYINSPGGSVTAG+AIYDT+Q I P+STW IGQA SMGS LLCAG GMR +L
Sbjct: 63 GKKPIHMYINSPGGSVTAGLAIYDTIQMISAPVSTWVIGQASSMGSLLLCAGEKGMRSAL 122
Query: 427 PNSRIMVHQPSGIARGQVSDILIHAEEL 510
PNSRIMVHQPSG A+G SDI+I AEE+
Sbjct: 123 PNSRIMVHQPSGGAQGTCSDIVIRAEEI 150
>sp|O87706|CLPP_CAUCR ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
Length = 209
Score = 196 bits (497), Expect = 4e-50
Identities = 99/149 (66%), Positives = 117/149 (78%)
Frame = +1
Query: 73 SNVMTSMPYVIEQTNAGERVYDVFSRLLKDRIICLMEPVNDGMASVIVAQLLFLHSESSK 252
S M +P V+EQT+ GER +D+FSRLLK+RII L PV DGMAS+I AQLLFL SE+ K
Sbjct: 6 STAMNLVPMVVEQTSRGERAFDIFSRLLKERIIFLTGPVEDGMASLICAQLLFLESENPK 65
Query: 253 TPIQMYINSPGGSVTAGMAIYDTMQHIQNPISTWCIGQACSMGSFLLCAGTPGMRYSLPN 432
I MYINSPGG VTAG+AIYDTMQ+I++P+ST C+G A SMGS LL AG G R SLPN
Sbjct: 66 KEIAMYINSPGGVVTAGLAIYDTMQYIKSPVSTVCMGMAASMGSLLLAAGAAGQRISLPN 125
Query: 433 SRIMVHQPSGIARGQVSDILIHAEELIET 519
+RIMVHQPSG RGQ SDI HAE++I+T
Sbjct: 126 ARIMVHQPSGGFRGQASDIERHAEDIIKT 154
>sp|Q89KG1|CLPP2_BRAJA ATP-dependent Clp protease proteolytic subunit 2 (Endopeptidase Clp
2)
Length = 211
Score = 192 bits (489), Expect = 3e-49
Identities = 93/144 (64%), Positives = 116/144 (80%)
Frame = +1
Query: 82 MTSMPYVIEQTNAGERVYDVFSRLLKDRIICLMEPVNDGMASVIVAQLLFLHSESSKTPI 261
M +P V+EQTN GER YD+FSRLLK+RII L PV DGM++++VAQLLFL +E+ K I
Sbjct: 9 MNLVPMVVEQTNRGERAYDIFSRLLKERIIFLTGPVEDGMSTLVVAQLLFLEAENPKKEI 68
Query: 262 QMYINSPGGSVTAGMAIYDTMQHIQNPISTWCIGQACSMGSFLLCAGTPGMRYSLPNSRI 441
MYINSPGG VT+G+AIYDTMQ I+ P+ST C GQA SMGS LL AG MR+SLPN+RI
Sbjct: 69 SMYINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGEKDMRFSLPNARI 128
Query: 442 MVHQPSGIARGQVSDILIHAEELI 513
MVHQPSG +GQ +DI++HA+E++
Sbjct: 129 MVHQPSGGFQGQATDIMLHAQEIL 152
>sp|Q6N5L3|CLPP_RHOPA ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
Length = 212
Score = 191 bits (486), Expect = 7e-49
Identities = 93/144 (64%), Positives = 116/144 (80%)
Frame = +1
Query: 82 MTSMPYVIEQTNAGERVYDVFSRLLKDRIICLMEPVNDGMASVIVAQLLFLHSESSKTPI 261
M +P V+EQTN GER YD+FSRLLK+RII + PV DGM+++IVAQLLFL +E+ K I
Sbjct: 9 MNLVPMVVEQTNRGERAYDIFSRLLKERIIFVTGPVEDGMSTLIVAQLLFLEAENPKKEI 68
Query: 262 QMYINSPGGSVTAGMAIYDTMQHIQNPISTWCIGQACSMGSFLLCAGTPGMRYSLPNSRI 441
MYINSPGG VT+G+AIYDTMQ I+ P+ST C GQA SMGS LL AG MR+SLPN+RI
Sbjct: 69 SMYINSPGGVVTSGLAIYDTMQFIRPPVSTLCTGQAASMGSLLLAAGHKDMRFSLPNARI 128
Query: 442 MVHQPSGIARGQVSDILIHAEELI 513
MVHQPSG +GQ +DI++HA+E++
Sbjct: 129 MVHQPSGGFQGQATDIMLHAQEIL 152
>sp|Q5GS83|CLPP_WOLTR ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
Length = 208
Score = 191 bits (484), Expect = 1e-48
Identities = 96/144 (66%), Positives = 115/144 (79%)
Frame = +1
Query: 82 MTSMPYVIEQTNAGERVYDVFSRLLKDRIICLMEPVNDGMASVIVAQLLFLHSESSKTPI 261
MT +P VIEQT+ GER YD++SRL+K+RII + PV D MASVIVAQLLFL SE+ I
Sbjct: 1 MTLIPIVIEQTSRGERAYDIYSRLVKERIIFVTGPVEDNMASVIVAQLLFLESENPDKDI 60
Query: 262 QMYINSPGGSVTAGMAIYDTMQHIQNPISTWCIGQACSMGSFLLCAGTPGMRYSLPNSRI 441
MYINSPGG VTAG++IYDTMQ+I+ +ST CIGQA SMGS LL AGT G RYSLP+SRI
Sbjct: 61 YMYINSPGGVVTAGLSIYDTMQYIKPDVSTLCIGQAASMGSLLLAAGTEGKRYSLPHSRI 120
Query: 442 MVHQPSGIARGQVSDILIHAEELI 513
M+HQPSG +GQ +DI IHA E++
Sbjct: 121 MIHQPSGGYQGQATDIEIHANEIL 144
>sp|Q92HM5|CLPP_RICCN ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
Length = 201
Score = 189 bits (481), Expect = 3e-48
Identities = 93/145 (64%), Positives = 116/145 (80%)
Frame = +1
Query: 82 MTSMPYVIEQTNAGERVYDVFSRLLKDRIICLMEPVNDGMASVIVAQLLFLHSESSKTPI 261
M+ +P VIE T+ GER YD++SRLLK+RII + V D MA++IVAQLLFL +E+ K I
Sbjct: 1 MSYVPIVIEPTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDI 60
Query: 262 QMYINSPGGSVTAGMAIYDTMQHIQNPISTWCIGQACSMGSFLLCAGTPGMRYSLPNSRI 441
MYINSPGG VTAG+AIYDTMQ+I+ ++T CIGQACSMGS LLC G GMRYSLP+SRI
Sbjct: 61 YMYINSPGGVVTAGLAIYDTMQYIKPKVATLCIGQACSMGSLLLCGGEKGMRYSLPHSRI 120
Query: 442 MVHQPSGIARGQVSDILIHAEELIE 516
M+HQPSG +GQ +DI IHA+E ++
Sbjct: 121 MIHQPSGGYKGQATDIEIHAQETLK 145
>sp|Q8G0I4|CLPP_BRUSU ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
Length = 209
Score = 189 bits (481), Expect = 3e-48
Identities = 94/146 (64%), Positives = 115/146 (78%)
Frame = +1
Query: 79 VMTSMPYVIEQTNAGERVYDVFSRLLKDRIICLMEPVNDGMASVIVAQLLFLHSESSKTP 258
VM +P V+EQTN GER YD+FSRLLK+RII + PV DGM+ ++ AQLLFL +E+ K
Sbjct: 8 VMNLVPMVVEQTNRGERAYDIFSRLLKERIIFVNGPVEDGMSMLVCAQLLFLEAENPKKE 67
Query: 259 IQMYINSPGGSVTAGMAIYDTMQHIQNPISTWCIGQACSMGSFLLCAGTPGMRYSLPNSR 438
I MYINSPGG VT+GMAIYDTMQ I+ P+ST C+GQA SMGS LL AG G RY+LPN+R
Sbjct: 68 INMYINSPGGVVTSGMAIYDTMQFIRPPVSTLCMGQAASMGSLLLTAGATGHRYALPNAR 127
Query: 439 IMVHQPSGIARGQVSDILIHAEELIE 516
IMVHQPSG +GQ SDI HA+++I+
Sbjct: 128 IMVHQPSGGFQGQASDIERHAQDIIK 153
>sp|Q68WL5|CLPP_RICTY ATP-dependent Clp protease proteolytic subunit (Endopeptidase Clp)
Length = 201
Score = 189 bits (481), Expect = 3e-48
Identities = 94/145 (64%), Positives = 115/145 (79%)
Frame = +1
Query: 82 MTSMPYVIEQTNAGERVYDVFSRLLKDRIICLMEPVNDGMASVIVAQLLFLHSESSKTPI 261
M+ +P VIEQT+ GER YD++SRLLK+RII + V D MA++IVAQLLFL +E+ K I
Sbjct: 1 MSYIPVVIEQTSRGERAYDIYSRLLKERIIFVCSTVEDHMANLIVAQLLFLEAENPKKDI 60
Query: 262 QMYINSPGGSVTAGMAIYDTMQHIQNPISTWCIGQACSMGSFLLCAGTPGMRYSLPNSRI 441
MYINSPGG VTAG+AIYDTMQ I+ ++T CIGQACSMGS LLC G GMRYSLP+SRI
Sbjct: 61 YMYINSPGGVVTAGLAIYDTMQFIKPKVATLCIGQACSMGSLLLCGGEHGMRYSLPHSRI 120
Query: 442 MVHQPSGIARGQVSDILIHAEELIE 516
M+HQPSG +GQ +DI IHA E ++
Sbjct: 121 MIHQPSGGYKGQATDIEIHARETLK 145
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,593,248
Number of Sequences: 369166
Number of extensions: 1257779
Number of successful extensions: 3566
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3537
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3403581975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)