Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_J10
(553 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P19351|TNNT_DROME Troponin T, skeletal muscle (Upheld pr... 40 0.004
sp|Q27371|TNNT_CAEEL Troponin T 40 0.005
sp|Q9XZ71|TNNT_PERAM Troponin T (TnT) 40 0.005
sp|Q18179|YXX5_CAEEL Putative neuropeptide Y receptor (NPY-R) 31 1.8
sp|Q6YRD0|Y085_ONYPE Hypothetical UPF0176 protein PAM085 31 2.3
sp|P35826|SLAP_BACTI S-layer protein precursor (Surface lay... 31 2.3
sp|P17892|LIPR2_MOUSE Pancreatic lipase-related protein 2 p... 31 2.3
sp|P02719|SCNA_ELEEL Sodium channel protein (Na(+) channel) 30 3.0
sp|Q8WJ26|MATK_MEMEL Maturase K (Intron maturase) 30 3.9
sp|Q8PUE7|CBIO6_METMA Putative cobalt import ATP-binding pr... 30 3.9
>sp|P19351|TNNT_DROME Troponin T, skeletal muscle (Upheld protein) (Intended thorax
protein)
Length = 397
Score = 40.0 bits (92), Expect = 0.004
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 15/126 (11%)
Frame = +3
Query: 15 QRQTLDLMELAERARQMNKGGKGQKVNVAQTDALPTKMSRAPPKVVMYSQYERVKDPRSF 194
+RQ DL EL ER +Q + K K + +AL K PPK+ + S+YER D RS+
Sbjct: 223 KRQDYDLKELKERQKQQLRH-KALKKGL-DPEALTGKY---PPKIQVASKYERRVDTRSY 277
Query: 195 RDRSTVFDG---------------PLYSDYFTKIEPRFKVHMGEQGGEVVTENDAHHGSE 329
D+ +F+G Y + + + GE+ G+ E + G E
Sbjct: 278 DDKKKLFEGGWDEISKDSNEKIWNEKKEQYTGRQKSKLPKWFGERPGKKAGEPETPEGEE 337
Query: 330 APAANE 347
A+E
Sbjct: 338 DAKADE 343
>sp|Q27371|TNNT_CAEEL Troponin T
Length = 405
Score = 39.7 bits (91), Expect = 0.005
Identities = 25/70 (35%), Positives = 37/70 (52%)
Frame = +3
Query: 15 QRQTLDLMELAERARQMNKGGKGQKVNVAQTDALPTKMSRAPPKVVMYSQYERVKDPRSF 194
+RQ D+ EL ER RQ + K K + +A S PPK+ S+++R D RS+
Sbjct: 258 ERQDYDMKELHERQRQAARN-KALKKGLDPEEAAS---SVHPPKITTASKFDRQTDRRSY 313
Query: 195 RDRSTVFDGP 224
DR +F+ P
Sbjct: 314 GDRRYLFENP 323
>sp|Q9XZ71|TNNT_PERAM Troponin T (TnT)
Length = 384
Score = 39.7 bits (91), Expect = 0.005
Identities = 27/69 (39%), Positives = 39/69 (56%)
Frame = +3
Query: 15 QRQTLDLMELAERARQMNKGGKGQKVNVAQTDALPTKMSRAPPKVVMYSQYERVKDPRSF 194
+RQ DL EL ER +Q + K K + +AL K PPK+ + S+YER D RS+
Sbjct: 220 KRQDYDLKELKERQKQQLRH-KALKKGL-DPEALTGKY---PPKIQVASKYERRVDTRSY 274
Query: 195 RDRSTVFDG 221
D+ +F+G
Sbjct: 275 DDKKKLFEG 283
>sp|Q18179|YXX5_CAEEL Putative neuropeptide Y receptor (NPY-R)
Length = 455
Score = 31.2 bits (69), Expect = 1.8
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Frame = -3
Query: 404 IFDIISIFEIRDKLSFSRYFIC------SWCFTPMMCIIFRDNFSTLFSHMNFKPRLNFC 243
+F I + FE+ + S + + IC S C P++ F NF F H+ + L
Sbjct: 289 VFHIFNTFELVNSFSVTTFSICHCLAMCSACLNPLIYAFFNHNFRIEFMHLFDRVGLRSL 348
Query: 242 KVI 234
+V+
Sbjct: 349 RVV 351
>sp|Q6YRD0|Y085_ONYPE Hypothetical UPF0176 protein PAM085
Length = 321
Score = 30.8 bits (68), Expect = 2.3
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +3
Query: 120 TKMSRAPPKVVMYSQYERVKDPRSFRDR 203
T+ S + V++Y QY +KDP++FRD+
Sbjct: 15 TQTSNSQYLVILYYQYAPIKDPQTFRDQ 42
>sp|P35826|SLAP_BACTI S-layer protein precursor (Surface layer protein)
Length = 393
Score = 30.8 bits (68), Expect = 2.3
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 7/125 (5%)
Frame = -3
Query: 467 FLSINMHYRKIGKVITIYRTQIFDIIS--IFEIRDKLSFSRY---FICSWCFTPMMCIIF 303
F+++ +HY T+Y T+I +S + ++ D+L+ + FI S CF IF
Sbjct: 269 FIALFIHYLPF----TVYLTEILIHLSWIVTDLDDELAVGFWTDCFISSCCFYCWNLFIF 324
Query: 302 RDNFSTLFSHMNFKPRLNFCKV--I*IQRSVKYCRSVSKTSWIFHSFILAIHHYFWWSA* 129
+ F+ L NFK F + + +Q+ + C SFI+ Y+++S
Sbjct: 325 DNVFNDLTILFNFKRERFFILIHNLLVQQFLYMCIFQMVHFKFSDSFIVCFSFYYFFSCF 384
Query: 128 HLSRQ 114
++R+
Sbjct: 385 VINRK 389
>sp|P17892|LIPR2_MOUSE Pancreatic lipase-related protein 2 precursor (Cytotoxic T
lymphocyte lipase)
Length = 468
Score = 30.8 bits (68), Expect = 2.3
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +1
Query: 154 CIANMKE*KI-QEVLETDLQYLTDLCIQITLQKLSLGLKFIWENKVEKLSRKMM 312
C AN K+ ++ + L+ + +Y+ D+ + + + ++ +KF+W NKV L R M
Sbjct: 381 CNANSKQYEVFKGSLQPEARYIRDIDVDVNVGEIQK-VKFLWNNKVINLFRPTM 433
>sp|P02719|SCNA_ELEEL Sodium channel protein (Na(+) channel)
Length = 1820
Score = 30.4 bits (67), Expect = 3.0
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = -3
Query: 467 FLSINMHYRKIGKVITIYRTQIFDIISIFEIRDK---LSFSRYFICSWCFTPMMCI 309
F I + R++ KVI Y ++F + I E+ K F RYF +WC+ + +
Sbjct: 1019 FEDIYIWRRRVIKVILEYADKVFTYVFIVEMLLKWVAYGFKRYFTDAWCWLDFVIV 1074
>sp|Q8WJ26|MATK_MEMEL Maturase K (Intron maturase)
Length = 510
Score = 30.0 bits (66), Expect = 3.9
Identities = 28/133 (21%), Positives = 54/133 (40%), Gaps = 10/133 (7%)
Frame = -3
Query: 419 IYRTQIFDIISIF-EIRDKLSFSRYFICSWCFTPMMCIIFRDNFSTLFSHMNFKPRLNFC 243
+Y I + SIF +R++ S R + + N +F H F+ L F
Sbjct: 215 LYNFHICEYESIFFYLRNQSSHLRSTSSGFFLQRIYFFXKXXNLVKVFIHXXFQDILEFX 274
Query: 242 KVI*IQ------RSVKYCRSVS--KTSWIFHSFILAIHHYFWW-SA*HLSRQSICLSHIN 90
+ +S+ Y + + W ++ L +HY+ W + R +C ++
Sbjct: 275 XXAFMHYVRYQGKSIIYSNNTTILMNKWKYYFIHLYQYHYYMWSQPGRIDRNQLCKQPLD 334
Query: 89 FLPFATFIHLTSS 51
FL + + + +TSS
Sbjct: 335 FLGYLSSVPITSS 347
>sp|Q8PUE7|CBIO6_METMA Putative cobalt import ATP-binding protein cbiO 6
Length = 498
Score = 30.0 bits (66), Expect = 3.9
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 6/48 (12%)
Frame = +3
Query: 3 GQQFQRQTLDLMELAE------RARQMNKGGKGQKVNVAQTDALPTKM 128
G++ QR+ ++MEL E RA GG+ QKV +A T AL T++
Sbjct: 116 GKEIQRRLNEVMELCEIGHLKERAPHTLSGGQKQKVALAATLALDTEV 163
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,263,522
Number of Sequences: 369166
Number of extensions: 1288520
Number of successful extensions: 3232
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3231
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3882260660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)