Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_J01
(435 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8JIU7|NACA_BRARE Nascent polypeptide-associated complex... 119 4e-27
sp|Q5E9A1|NACA_BOVIN Nascent polypeptide-associated complex... 118 5e-27
sp|Q13765|NACA_HUMAN Nascent polypeptide-associated complex... 118 5e-27
sp|Q60817|NACA_MOUSE Nascent polypeptide-associated complex... 118 5e-27
sp|Q68F90|NACA_XENTR Nascent polypeptide-associated complex... 118 5e-27
sp|Q8AWF2|NACA_ORENI Nascent polypeptide-associated complex... 118 5e-27
sp|P70670|NACAM_MOUSE Nascent polypeptide-associated comple... 118 5e-27
sp|Q6IP73|NACA_XENLA Nascent polypeptide-associated complex... 116 2e-26
sp|Q5R9I9|NACA_PONPY Nascent polypeptide-associated complex... 115 3e-26
sp|Q61UX1|NACA_CAEBR Nascent polypeptide-associated complex... 115 5e-26
>sp|Q8JIU7|NACA_BRARE Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 119 bits (297), Expect = 4e-27
Identities = 68/131 (51%), Positives = 81/131 (61%)
Frame = +1
Query: 1 VNRVAIRKSKNILFVVGQPEVFKSPASDTYVVFGEAKIEDXXXXXXXXXXXXXXXXXXXX 180
V RV IRKSKNILFV+ +P+V+KSPASDTY+VFGEAKIED
Sbjct: 91 VTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED-------LSQQAQLAAAEKF 143
Query: 181 XTDNXXXXXXXXXXXXETIQEESDGEEEDATGLCENDIKLIMDQAQVSRNKAIRALKNAD 360
T+QEES+ EE D TG+ DI+L+M QA VSR KA+RALKN +
Sbjct: 144 KVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNN 203
Query: 361 NDMVNAIMELT 393
ND+VNAIMELT
Sbjct: 204 NDIVNAIMELT 214
>sp|Q5E9A1|NACA_BOVIN Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 118 bits (296), Expect = 5e-27
Identities = 68/131 (51%), Positives = 80/131 (61%)
Frame = +1
Query: 1 VNRVAIRKSKNILFVVGQPEVFKSPASDTYVVFGEAKIEDXXXXXXXXXXXXXXXXXXXX 180
V RV IRKSKNILFV+ +P+V+KSPASDTY+VFGEAKIED
Sbjct: 91 VTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED-------LSQQAQLAAAEKF 143
Query: 181 XTDNXXXXXXXXXXXXETIQEESDGEEEDATGLCENDIKLIMDQAQVSRNKAIRALKNAD 360
T+QEES+ EE D TG+ DI+L+M QA VSR KA+RALKN
Sbjct: 144 KVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNS 203
Query: 361 NDMVNAIMELT 393
ND+VNAIMELT
Sbjct: 204 NDIVNAIMELT 214
>sp|Q13765|NACA_HUMAN Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC) (Hom s 2.02)
Length = 215
Score = 118 bits (296), Expect = 5e-27
Identities = 68/131 (51%), Positives = 80/131 (61%)
Frame = +1
Query: 1 VNRVAIRKSKNILFVVGQPEVFKSPASDTYVVFGEAKIEDXXXXXXXXXXXXXXXXXXXX 180
V RV IRKSKNILFV+ +P+V+KSPASDTY+VFGEAKIED
Sbjct: 91 VTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED-------LSQQAQLAAAEKF 143
Query: 181 XTDNXXXXXXXXXXXXETIQEESDGEEEDATGLCENDIKLIMDQAQVSRNKAIRALKNAD 360
T+QEES+ EE D TG+ DI+L+M QA VSR KA+RALKN
Sbjct: 144 KVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNS 203
Query: 361 NDMVNAIMELT 393
ND+VNAIMELT
Sbjct: 204 NDIVNAIMELT 214
>sp|Q60817|NACA_MOUSE Nascent polypeptide-associated complex alpha subunit (Alpha-NAC)
(Alpha-NAC/1.9.2)
Length = 215
Score = 118 bits (296), Expect = 5e-27
Identities = 68/131 (51%), Positives = 80/131 (61%)
Frame = +1
Query: 1 VNRVAIRKSKNILFVVGQPEVFKSPASDTYVVFGEAKIEDXXXXXXXXXXXXXXXXXXXX 180
V RV IRKSKNILFV+ +P+V+KSPASDTY+VFGEAKIED
Sbjct: 91 VTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED-------LSQQAQLAAAEKF 143
Query: 181 XTDNXXXXXXXXXXXXETIQEESDGEEEDATGLCENDIKLIMDQAQVSRNKAIRALKNAD 360
T+QEES+ EE D TG+ DI+L+M QA VSR KA+RALKN
Sbjct: 144 KVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNS 203
Query: 361 NDMVNAIMELT 393
ND+VNAIMELT
Sbjct: 204 NDIVNAIMELT 214
>sp|Q68F90|NACA_XENTR Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 214
Score = 118 bits (296), Expect = 5e-27
Identities = 68/131 (51%), Positives = 80/131 (61%)
Frame = +1
Query: 1 VNRVAIRKSKNILFVVGQPEVFKSPASDTYVVFGEAKIEDXXXXXXXXXXXXXXXXXXXX 180
V RV IRKSKNILFV+ +P+V+KSPASDTY+VFGEAKIED
Sbjct: 90 VTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED-------LSQQAQLAAAEKF 142
Query: 181 XTDNXXXXXXXXXXXXETIQEESDGEEEDATGLCENDIKLIMDQAQVSRNKAIRALKNAD 360
T+QEES+ EE D TG+ DI+L+M QA VSR KA+RALKN
Sbjct: 143 KVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNS 202
Query: 361 NDMVNAIMELT 393
ND+VNAIMELT
Sbjct: 203 NDIVNAIMELT 213
>sp|Q8AWF2|NACA_ORENI Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 118 bits (296), Expect = 5e-27
Identities = 68/131 (51%), Positives = 81/131 (61%)
Frame = +1
Query: 1 VNRVAIRKSKNILFVVGQPEVFKSPASDTYVVFGEAKIEDXXXXXXXXXXXXXXXXXXXX 180
V RV IRKSKNILFV+ +P+V+KSPASDTY+VFGEAKIED
Sbjct: 91 VTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED-------LSQQAQLAAAEKF 143
Query: 181 XTDNXXXXXXXXXXXXETIQEESDGEEEDATGLCENDIKLIMDQAQVSRNKAIRALKNAD 360
T+QEES+ EE D TG+ DI+L+M QA VSR KA+RALKN +
Sbjct: 144 KVPGETVSNVQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNN 203
Query: 361 NDMVNAIMELT 393
ND+VNAIMELT
Sbjct: 204 NDIVNAIMELT 214
>sp|P70670|NACAM_MOUSE Nascent polypeptide-associated complex alpha subunit, muscle-specific
form (Alpha-NAC, muscle-specific form)
Length = 2187
Score = 118 bits (296), Expect = 5e-27
Identities = 68/131 (51%), Positives = 80/131 (61%)
Frame = +1
Query: 1 VNRVAIRKSKNILFVVGQPEVFKSPASDTYVVFGEAKIEDXXXXXXXXXXXXXXXXXXXX 180
V RV IRKSKNILFV+ +P+V+KSPASDTY+VFGEAKIED
Sbjct: 2063 VTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED-------LSQQAQLAAAEKF 2115
Query: 181 XTDNXXXXXXXXXXXXETIQEESDGEEEDATGLCENDIKLIMDQAQVSRNKAIRALKNAD 360
T+QEES+ EE D TG+ DI+L+M QA VSR KA+RALKN
Sbjct: 2116 KVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNS 2175
Query: 361 NDMVNAIMELT 393
ND+VNAIMELT
Sbjct: 2176 NDIVNAIMELT 2186
>sp|Q6IP73|NACA_XENLA Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 213
Score = 116 bits (291), Expect = 2e-26
Identities = 67/131 (51%), Positives = 79/131 (60%)
Frame = +1
Query: 1 VNRVAIRKSKNILFVVGQPEVFKSPASDTYVVFGEAKIEDXXXXXXXXXXXXXXXXXXXX 180
V RV IRKSKNILFV+ +P+V+KSPASDTY+VFGEAKIED
Sbjct: 89 VTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED-------LSQQAQLAAAEKF 141
Query: 181 XTDNXXXXXXXXXXXXETIQEESDGEEEDATGLCENDIKLIMDQAQVSRNKAIRALKNAD 360
T+QEES+ EE D G+ DI+L+M QA VSR KA+RALKN
Sbjct: 142 KVQGETVSNIQENTQTPTVQEESEEEEVDEAGVEVKDIELVMSQANVSRAKAVRALKNNS 201
Query: 361 NDMVNAIMELT 393
ND+VNAIMELT
Sbjct: 202 NDIVNAIMELT 212
>sp|Q5R9I9|NACA_PONPY Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 215
Score = 115 bits (289), Expect = 3e-26
Identities = 67/131 (51%), Positives = 79/131 (60%)
Frame = +1
Query: 1 VNRVAIRKSKNILFVVGQPEVFKSPASDTYVVFGEAKIEDXXXXXXXXXXXXXXXXXXXX 180
V RV IRKSKNILFV+ +P+V+KSPASDTY+VFGEAKIED
Sbjct: 91 VTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED-------LSQQAQLAAAEKF 143
Query: 181 XTDNXXXXXXXXXXXXETIQEESDGEEEDATGLCENDIKLIMDQAQVSRNKAIRALKNAD 360
T+QEES+ EE D T + DI+L+M QA VSR KA+RALKN
Sbjct: 144 KVQGEAVSNIQENTQTPTVQEESEEEEVDETDVEVKDIELVMSQANVSRAKAVRALKNNS 203
Query: 361 NDMVNAIMELT 393
ND+VNAIMELT
Sbjct: 204 NDIVNAIMELT 214
>sp|Q61UX1|NACA_CAEBR Nascent polypeptide-associated complex alpha subunit (NAC-alpha)
(Alpha-NAC)
Length = 197
Score = 115 bits (287), Expect = 5e-26
Identities = 64/132 (48%), Positives = 84/132 (63%), Gaps = 1/132 (0%)
Frame = +1
Query: 1 VNRVAIRKSKNILFVVGQPEVFKSPASDTYVVFGEAKIEDXXXXXXXXXXXXXXXXXXXX 180
V+RV IRKSKNILFV+ +P+VFKSP SDTY++FGEAKIED
Sbjct: 79 VSRVCIRKSKNILFVINKPDVFKSPGSDTYIIFGEAKIEDLTQHAQMSAI---------- 128
Query: 181 XTDNXXXXXXXXXXXXETIQEESDGE-EEDATGLCENDIKLIMDQAQVSRNKAIRALKNA 357
+T++E+ + + EED+TG+ E DI+L++ QA +RNKAIRALK+A
Sbjct: 129 ----ENMKPTREAPQLKTVEEDDNEDVEEDSTGIEEKDIELVISQANTTRNKAIRALKDA 184
Query: 358 DNDMVNAIMELT 393
DND+VNAIM LT
Sbjct: 185 DNDIVNAIMSLT 196
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,540,928
Number of Sequences: 369166
Number of extensions: 591607
Number of successful extensions: 1872
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1861
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2194785120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)