Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_I19
(316 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53031|2ABA_CANTR Protein phosphatase PP2A regulatory su... 29 2.9
sp|Q75BV4|LYS1_ASHGO Saccharopine dehydrogenase [NAD+, L-ly... 29 3.8
sp|P81473|LEF2_NPVAG Late expression factor 2 28 5.0
sp|P41418|LEF2_NPVAC Late expression factor 2 28 6.5
sp|Q9Y473|ZN175_HUMAN Zinc finger protein 175 (Zinc finger ... 28 8.5
>sp|P53031|2ABA_CANTR Protein phosphatase PP2A regulatory subunit B (PR55) (Cell division
control protein 55)
Length = 508
Score = 29.3 bits (64), Expect = 2.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 2 NSKVKIKNVFSMESKRNKNTGFATQST 82
+ K K K+ F SKR+K GF+T++T
Sbjct: 369 DDKPKFKSAFKNSSKRSKKNGFSTRTT 395
>sp|Q75BV4|LYS1_ASHGO Saccharopine dehydrogenase [NAD+, L-lysine-forming]
(Lysine--2-oxoglutarate reductase) (SDH)
Length = 372
Score = 28.9 bits (63), Expect = 3.8
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Frame = +3
Query: 33 AWSQKEIRTQDLPHKVPYCPKHLSHIKQGPACDD----GSYRRKPCYIGPSKFCGKCDPS 200
AW Q +DLP PY + + AC++ G+ + + IG CG S
Sbjct: 151 AWKQTHTDAEDLPAVAPYENEQALVSEVAAACEEAYKKGARKPRVLVIGALGRCG----S 206
Query: 201 ASFEALNKGYVFDKFVMR 254
+ E L + + DK ++R
Sbjct: 207 GAVELLRQCGLHDKHIIR 224
>sp|P81473|LEF2_NPVAG Late expression factor 2
Length = 204
Score = 28.5 bits (62), Expect = 5.0
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = +3
Query: 75 KVPYCP-KHLSHIKQGPACDDGSYRRK---PCYIGPSKFCGKCDPSASFEALNKGYVFD 239
++P C K ++ + A G YR++ CY+G C KC + +AL Y D
Sbjct: 98 RMPLCMVKIMTELSNASAPRGGMYRKRFEFTCYLGNVVSCTKCKSACLIDALLHFYKMD 156
>sp|P41418|LEF2_NPVAC Late expression factor 2
Length = 210
Score = 28.1 bits (61), Expect = 6.5
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = +3
Query: 81 PYCPKHLSHIKQGPACDDGSYRRK---PCYIGPSKFCGKCDPSASFEALNKGYVFD 239
P K L+ +K+ G YR++ CYI C KC+ +AL Y D
Sbjct: 107 PCIKKILNDLKENNVPRGGMYRKRFILNCYIANVVSCAKCENRCLIKALTHFYNHD 162
>sp|Q9Y473|ZN175_HUMAN Zinc finger protein 175 (Zinc finger protein OTK18)
Length = 711
Score = 27.7 bits (60), Expect = 8.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 132 DGSYRRKPCYIGPSKFCGKCDPSASFE 212
D + +KP +GP K G C+ S SFE
Sbjct: 4 DVNLSQKPQVLGPEKQDGSCEASVSFE 30
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,990,751
Number of Sequences: 369166
Number of extensions: 747855
Number of successful extensions: 2382
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2381
length of database: 68,354,980
effective HSP length: 73
effective length of database: 54,869,325
effective search space used: 1700949075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)