Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_I14
(645 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91V41|RAB14_MOUSE Ras-related protein Rab-14 203 3e-52
sp|P61107|RAB14_RAT Ras-related protein Rab-14 >gi|46577643... 203 3e-52
sp|P36410|RAB4_DICDI Ras-related protein Rab4 182 6e-46
sp|Q05975|RAB2_LYMST Ras-related protein Rab-2 171 1e-42
sp|P36409|RAB2_DICDI Ras-related protein Rab2 171 2e-42
sp|P53994|RAB2A_MOUSE Ras-related protein Rab-2A 167 2e-41
sp|P05712|RAB2A_RAT Ras-related protein Rab-2A 167 3e-41
sp|P61019|RAB2A_HUMAN Ras-related protein Rab-2A >gi|465776... 167 3e-41
sp|Q01971|RAB2A_RABIT Ras-related protein Rab-2A 167 3e-41
sp|Q39570|YPTC4_CHLRE GTP-binding protein YPTC4 164 2e-40
>sp|Q91V41|RAB14_MOUSE Ras-related protein Rab-14
Length = 215
Score = 203 bits (517), Expect = 3e-52
Identities = 96/160 (60%), Positives = 127/160 (79%), Gaps = 5/160 (3%)
Frame = +2
Query: 14 GEKVKLQIWDTAGQERFRAVTRSYYRGAAGAILVYDITRKATFNRVHSWLSDARSLTSPQ 193
G+K+KLQIWDTAGQERFRAVTRSYYRGAAGA++VYDITR++T+N + SWL+DAR+LT+P
Sbjct: 57 GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN 116
Query: 194 TVFILIGNKGDLNENREVSFEDGKDLADENGMFFLECSARTGEHVDDAFIETARKIYQHI 373
TV ILIGNK DL R+V++E+ K A+ENG+ FLE SA+TGE+V+DAF+E A+KIYQ+I
Sbjct: 117 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNI 176
Query: 374 QEGNVDLNSASNGVVMKRPPTPAKSSTNNE-----KNCAC 478
Q+G++DLN+A +G V +P P +E + C C
Sbjct: 177 QDGSLDLNAAESG-VQHKPSAPQGGRLTSEPQPQREGCGC 215
>sp|P61107|RAB14_RAT Ras-related protein Rab-14
sp|P61106|RAB14_HUMAN Ras-related protein Rab-14
Length = 215
Score = 203 bits (517), Expect = 3e-52
Identities = 96/160 (60%), Positives = 127/160 (79%), Gaps = 5/160 (3%)
Frame = +2
Query: 14 GEKVKLQIWDTAGQERFRAVTRSYYRGAAGAILVYDITRKATFNRVHSWLSDARSLTSPQ 193
G+K+KLQIWDTAGQERFRAVTRSYYRGAAGA++VYDITR++T+N + SWL+DAR+LT+P
Sbjct: 57 GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN 116
Query: 194 TVFILIGNKGDLNENREVSFEDGKDLADENGMFFLECSARTGEHVDDAFIETARKIYQHI 373
TV ILIGNK DL R+V++E+ K A+ENG+ FLE SA+TGE+V+DAF+E A+KIYQ+I
Sbjct: 117 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNI 176
Query: 374 QEGNVDLNSASNGVVMKRPPTPAKSSTNNE-----KNCAC 478
Q+G++DLN+A +G V +P P +E + C C
Sbjct: 177 QDGSLDLNAAESG-VQHKPSAPQGGRLTSEPQPQREGCGC 215
>sp|P36410|RAB4_DICDI Ras-related protein Rab4
Length = 205
Score = 182 bits (462), Expect = 6e-46
Identities = 87/152 (57%), Positives = 115/152 (75%)
Frame = +2
Query: 17 EKVKLQIWDTAGQERFRAVTRSYYRGAAGAILVYDITRKATFNRVHSWLSDARSLTSPQT 196
+K+KLQIWDTAGQERFRAVTRSYYRGAAGA+LVYDITR+ T+N + +WL+DAR+LT+P T
Sbjct: 55 KKIKLQIWDTAGQERFRAVTRSYYRGAAGALLVYDITRRITYNHLTTWLTDARNLTNPNT 114
Query: 197 VFILIGNKGDLNENREVSFEDGKDLADENGMFFLECSARTGEHVDDAFIETARKIYQHIQ 376
V +LIGNK DL R+V++E+ A +NG+ F+E SA+TGE+V++AF+ TA+ I+Q +Q
Sbjct: 115 VIMLIGNKKDLEGQRDVTYEEASAFAKQNGLIFVESSAKTGENVEEAFLRTAKLIFQSVQ 174
Query: 377 EGNVDLNSASNGVVMKRPPTPAKSSTNNEKNC 472
EGNVDL +G + K PP N C
Sbjct: 175 EGNVDL--IPDGGITKNPPQTITDKKNLFSRC 204
>sp|Q05975|RAB2_LYMST Ras-related protein Rab-2
Length = 212
Score = 171 bits (433), Expect = 1e-42
Identities = 81/148 (54%), Positives = 111/148 (75%)
Frame = +2
Query: 14 GEKVKLQIWDTAGQERFRAVTRSYYRGAAGAILVYDITRKATFNRVHSWLSDARSLTSPQ 193
G+++KLQIWDTAGQE FR++TRSYYRGAAGA+LVYDITR+ TFN + +WL DAR ++
Sbjct: 52 GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSN 111
Query: 194 TVFILIGNKGDLNENREVSFEDGKDLADENGMFFLECSARTGEHVDDAFIETARKIYQHI 373
V +LIGNK DL REV E+G+ A E+G+ F+E SA+T +V++AFI TA++IYQ I
Sbjct: 112 MVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKI 171
Query: 374 QEGNVDLNSASNGVVMKRPPTPAKSSTN 457
Q+G D+N+ +NG+ + +PA S N
Sbjct: 172 QDGVFDINNEANGIKIGPQHSPASQSLN 199
>sp|P36409|RAB2_DICDI Ras-related protein Rab2
Length = 199
Score = 171 bits (432), Expect = 2e-42
Identities = 79/152 (51%), Positives = 106/152 (69%)
Frame = +2
Query: 23 VKLQIWDTAGQERFRAVTRSYYRGAAGAILVYDITRKATFNRVHSWLSDARSLTSPQTVF 202
+KLQIWDTAGQE FR++TRSYYRG+AGA+LVYDITR+ TFN + WL DARS +
Sbjct: 46 IKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTI 105
Query: 203 ILIGNKGDLNENREVSFEDGKDLADENGMFFLECSARTGEHVDDAFIETARKIYQHIQEG 382
ILIGNK D+ R VS+E+G+ ADENG+ FLE SA+T +V++AF+ TA KIY+ IQ+G
Sbjct: 106 ILIGNKSDMESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQKG 165
Query: 383 NVDLNSASNGVVMKRPPTPAKSSTNNEKNCAC 478
+ D+N+ S G+ + P + + C
Sbjct: 166 DFDINNESFGIKLGAPTSKQDGTDQKPAGGGC 197
>sp|P53994|RAB2A_MOUSE Ras-related protein Rab-2A
Length = 212
Score = 167 bits (424), Expect = 2e-41
Identities = 81/152 (53%), Positives = 113/152 (74%)
Frame = +2
Query: 14 GEKVKLQIWDTAGQERFRAVTRSYYRGAAGAILVYDITRKATFNRVHSWLSDARSLTSPQ 193
G+++KLQIWDTAGQE FR++TRSYYRGAAGA+LVYDITR+ TFN + +WL DAR ++
Sbjct: 52 GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSN 111
Query: 194 TVFILIGNKGDLNENREVSFEDGKDLADENGMFFLECSARTGEHVDDAFIETARKIYQHI 373
V +LIGNK DL REV E+G+ A E+G+ F+E SA+T +V++AFI TA++IY+ I
Sbjct: 112 MVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171
Query: 374 QEGNVDLNSASNGVVMKRPPTPAKSSTNNEKN 469
QEG D+N+ +NG+ K P A ++ ++ N
Sbjct: 172 QEGVFDINNEANGI--KIGPQHAATNASHGSN 201
>sp|P05712|RAB2A_RAT Ras-related protein Rab-2A
Length = 212
Score = 167 bits (422), Expect = 3e-41
Identities = 77/134 (57%), Positives = 105/134 (78%)
Frame = +2
Query: 14 GEKVKLQIWDTAGQERFRAVTRSYYRGAAGAILVYDITRKATFNRVHSWLSDARSLTSPQ 193
G+++KLQIWDTAGQE FR++TRSYYRGAAGA+LVYDITR+ TFN + +WL DAR ++
Sbjct: 52 GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSN 111
Query: 194 TVFILIGNKGDLNENREVSFEDGKDLADENGMFFLECSARTGEHVDDAFIETARKIYQHI 373
V +LIGNK DL REV E+G+ A E+G+ F+E SA+T +V++AFI TA++IY+ I
Sbjct: 112 MVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171
Query: 374 QEGNVDLNSASNGV 415
QEG D+N+ +NG+
Sbjct: 172 QEGVFDINNEANGI 185
>sp|P61019|RAB2A_HUMAN Ras-related protein Rab-2A
sp|P61105|RAB2A_CANFA Ras-related protein Rab-2A
Length = 212
Score = 167 bits (422), Expect = 3e-41
Identities = 77/134 (57%), Positives = 105/134 (78%)
Frame = +2
Query: 14 GEKVKLQIWDTAGQERFRAVTRSYYRGAAGAILVYDITRKATFNRVHSWLSDARSLTSPQ 193
G+++KLQIWDTAGQE FR++TRSYYRGAAGA+LVYDITR+ TFN + +WL DAR ++
Sbjct: 52 GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSN 111
Query: 194 TVFILIGNKGDLNENREVSFEDGKDLADENGMFFLECSARTGEHVDDAFIETARKIYQHI 373
V +LIGNK DL REV E+G+ A E+G+ F+E SA+T +V++AFI TA++IY+ I
Sbjct: 112 MVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171
Query: 374 QEGNVDLNSASNGV 415
QEG D+N+ +NG+
Sbjct: 172 QEGVFDINNEANGI 185
>sp|Q01971|RAB2A_RABIT Ras-related protein Rab-2A
Length = 212
Score = 167 bits (422), Expect = 3e-41
Identities = 77/134 (57%), Positives = 105/134 (78%)
Frame = +2
Query: 14 GEKVKLQIWDTAGQERFRAVTRSYYRGAAGAILVYDITRKATFNRVHSWLSDARSLTSPQ 193
G+++KLQIWDTAGQE FR++TRSYYRGAAGA+LVYDITR+ TFN + +WL DAR ++
Sbjct: 52 GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSN 111
Query: 194 TVFILIGNKGDLNENREVSFEDGKDLADENGMFFLECSARTGEHVDDAFIETARKIYQHI 373
V +LIGNK DL REV E+G+ A E+G+ F+E SA+T +V++AFI TA++IY+ I
Sbjct: 112 MVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKI 171
Query: 374 QEGNVDLNSASNGV 415
QEG D+N+ +NG+
Sbjct: 172 QEGVFDINNEANGI 185
>sp|Q39570|YPTC4_CHLRE GTP-binding protein YPTC4
Length = 213
Score = 164 bits (415), Expect = 2e-40
Identities = 77/134 (57%), Positives = 103/134 (76%)
Frame = +2
Query: 14 GEKVKLQIWDTAGQERFRAVTRSYYRGAAGAILVYDITRKATFNRVHSWLSDARSLTSPQ 193
G+++KLQIWDTAGQE FR++TRSYYRGAAGA+LVYDITR+ TFN + SWL DAR +P
Sbjct: 52 GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPN 111
Query: 194 TVFILIGNKGDLNENREVSFEDGKDLADENGMFFLECSARTGEHVDDAFIETARKIYQHI 373
+LIGNK DL R V+ E+G+ A E+G+ FLE SART +V++AFI TA++IY+ I
Sbjct: 112 MTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKI 171
Query: 374 QEGNVDLNSASNGV 415
Q+G D+++ S G+
Sbjct: 172 QDGVFDVSNESYGI 185
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,464,100
Number of Sequences: 369166
Number of extensions: 1340993
Number of successful extensions: 4302
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4136
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5267491560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)