Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_I01
(467 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q10301|YD48_SCHPO Hypothetical protein C22H10.08 in chro... 30 2.1
sp|P42724|TFXB_RHILT Trifolitoxin processing protein tfxB 30 2.7
sp|Q6NVD0|FREM2_MOUSE FRAS1-related extracellular matrix pr... 30 2.7
sp|O33815|BGAL_STAXY Beta-galactosidase (Lactase) 29 4.6
sp|Q60296|T1SH_METJA Putative type I restriction enzyme Mja... 29 6.1
sp|Q90WJ8|AJL2_ANGJA Lactose-binding lectin l-2 precursor (... 29 6.1
>sp|Q10301|YD48_SCHPO Hypothetical protein C22H10.08 in chromosome I
Length = 492
Score = 30.4 bits (67), Expect = 2.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 57 GQYIPGKLVEGWNEVFVAYGGAEHSKNYYEVLVESSILNHKG 182
G I G+L WN + H+K+YY VL+ S L+ G
Sbjct: 455 GSCIDGRLTSAWN-----WANNIHTKDYYRVLLMSGFLSFNG 491
>sp|P42724|TFXB_RHILT Trifolitoxin processing protein tfxB
Length = 373
Score = 30.0 bits (66), Expect = 2.7
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +3
Query: 195 WADGENVPKGAVVGGINDGQPLYVARSNVGGQVVVGKYFPQHGCGYFPYGGEEHRVDSVE 374
+A GE++ K GG AR + VVVG G + Y HR+D++E
Sbjct: 213 YATGEHLRKAVPSGG---------ARHPIEFYVVVGDEIAGIEAGVYHYNVRHHRLDAIE 263
Query: 375 VLCCSTK 395
+ S K
Sbjct: 264 IASTSLK 270
>sp|Q6NVD0|FREM2_MOUSE FRAS1-related extracellular matrix protein 2 precursor (ECM3 homolog)
(NV domain containing protein 1)
Length = 3160
Score = 30.0 bits (66), Expect = 2.7
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +3
Query: 24 DQTFVARAEHEGQYIPGKLVEGWNEVFVAYGGAEHSKNYYEVLVE 158
D+ F +A+ + Q+ PG+ W ++ G EHS+ + VL E
Sbjct: 1804 DRDFKGKAQKQVQFNPGQTRASWRVRILSDGEHEHSETFQVVLSE 1848
>sp|O33815|BGAL_STAXY Beta-galactosidase (Lactase)
Length = 994
Score = 29.3 bits (64), Expect = 4.6
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 8/92 (8%)
Frame = +3
Query: 108 AYGGAEHSKNYYEVLVESSILNHKGYEWRWADGENVPKGAVVGGINDGQPLYVARSNVGG 287
A G + + Y+ LVE G+ W W D A+ G+ DG P++ + G
Sbjct: 514 AMGNSPGDLHAYQTLVEQYDSFIGGFVWEWCD------HAIQTGMKDGNPIFRYGGDFGE 567
Query: 288 QV------VVGKYFPQH--GCGYFPYGGEEHR 359
++ V G FP GY+ + +EHR
Sbjct: 568 KLHDGNFCVDGIVFPNRVPHEGYYEF-KQEHR 598
>sp|Q60296|T1SH_METJA Putative type I restriction enzyme MjaXP specificity protein (S
protein) (S.MjaXP)
Length = 432
Score = 28.9 bits (63), Expect = 6.1
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = -3
Query: 171 LKYLIPPKLRNNFYYVLRLRKLQKLHSSLQPIFQEYID--LRVLLLRQKSDHQLSQL 7
L YL + N + + LQK HS +QP+F++ I+ ++++L++ D L +L
Sbjct: 366 LPYLKISDIENKYIIIPPQPILQKFHSLVQPLFEKIINNQKQIMVLKKIRDALLPKL 422
>sp|Q90WJ8|AJL2_ANGJA Lactose-binding lectin l-2 precursor (Ajl-2)
Length = 166
Score = 28.9 bits (63), Expect = 6.1
Identities = 16/61 (26%), Positives = 26/61 (42%)
Frame = +3
Query: 174 HKGYEWRWADGENVPKGAVVGGINDGQPLYVARSNVGGQVVVGKYFPQHGCGYFPYGGEE 353
H+G W W+DG + N G+P ++ GG + C + YGG++
Sbjct: 100 HEGRSWLWSDGTSASAEGDFSMWNPGEP-----NDAGG---------KEDCVHDNYGGQK 145
Query: 354 H 356
H
Sbjct: 146 H 146
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,554,921
Number of Sequences: 369166
Number of extensions: 1230855
Number of successful extensions: 3833
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3828
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2683624230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)