Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_H24
(590 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42322|CANB1_NAEGR Calcineurin B subunit (Protein phosph... 30 3.5
sp|P87072|CANB_NEUCR Calcineurin B subunit (Protein phospha... 30 4.5
>sp|P42322|CANB1_NAEGR Calcineurin B subunit (Protein phosphatase 2B regulatory subunit)
(Calcineurin regulatory subunit)
Length = 177
Score = 30.4 bits (67), Expect = 3.5
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +2
Query: 290 FCEMDKNNNGNLDRSEIALLSQL-LNPSTPCLNTFLSKCGSGTISFSAWNSCFKVPKAE 463
F ++DK+ NG + + E ++ +L +NP + + + G G+++F + + V A+
Sbjct: 34 FKKLDKDGNGTISKDEFLMIPELAVNPLVKRVISIFDENGDGSVNFKEFIAALSVFNAQ 92
>sp|P87072|CANB_NEUCR Calcineurin B subunit (Protein phosphatase 2B regulatory subunit)
(Calcineurin regulatory subunit)
Length = 174
Score = 30.0 bits (66), Expect = 4.5
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 290 FCEMDKNNNGNLDRSEIALLSQL-LNPSTPCLNTFLSKCGSGTISFSAWNS 439
F ++DK+N+G ++R E L Q+ NP + + G G + F + S
Sbjct: 30 FMKLDKDNSGTIEREEFLSLPQISTNPLATRMIAIFDEDGGGDVDFQEFVS 80
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,273,240
Number of Sequences: 369166
Number of extensions: 1214225
Number of successful extensions: 2320
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2320
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4455160255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)