Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_H14
(472 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96VG1|YBAI_SCHPO Hypothetical UPF0203 protein C119.18 33 0.25
sp|P36119|YK03_YEAST Hypothetical 60.8 kDa protein in YPT52... 32 0.95
sp|P93733|PLDB1_ARATH Phospholipase D beta 1 (AtPLDbeta1) (... 31 1.6
sp|O88307|SORL_MOUSE Sortilin-related receptor precursor (S... 30 3.6
sp|Q57959|SYK_METJA Lysyl-tRNA synthetase (Lysine--tRNA lig... 29 4.7
sp|P0C0K7|EPHB6_RAT Ephrin type-B receptor 6 precursor (Tyr... 29 4.7
sp|O08644|EPHB6_MOUSE Ephrin type-B receptor 6 precursor (T... 29 4.7
>sp|Q96VG1|YBAI_SCHPO Hypothetical UPF0203 protein C119.18
Length = 69
Score = 33.5 bits (75), Expect = 0.25
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 220 TSSLYKQCGPMVSQYEEVIEDWYFNHQDK-DLMNFLCFENVLKNEYNGCLKETL 378
+SS+ ++C P +Y+ DWY N K DL N C E L EY CL + L
Sbjct: 2 SSSVSEECTPAKKKYDACFNDWYANKFLKGDLHNRDCDE--LFAEYKSCLLKAL 53
>sp|P36119|YK03_YEAST Hypothetical 60.8 kDa protein in YPT52-DBP7 intergenic region
Length = 530
Score = 31.6 bits (70), Expect = 0.95
Identities = 13/56 (23%), Positives = 29/56 (51%)
Frame = +1
Query: 10 KSELRLTEVMEDPHICERMWQYQLHKERKDSTRFAKGTPQTFETLKKLSARGVEIK 177
KSE+ T+ +E+ H+ + W Y+ K++ D + K T + +K + +++
Sbjct: 449 KSEINTTKSLENLHLQSKAWDYERDKKQFDRPTYVKKNSDTAQQNRKTEEKAHDMQ 504
>sp|P93733|PLDB1_ARATH Phospholipase D beta 1 (AtPLDbeta1) (PLD beta 1) (PLDbeta)
Length = 967
Score = 30.8 bits (68), Expect = 1.6
Identities = 22/70 (31%), Positives = 32/70 (45%)
Frame = +1
Query: 136 ETLKKLSARGVEIKMDVPESLWDQPTAETSSLYKQCGPMVSQYEEVIEDWYFNHQDKDLM 315
E L+ S GV + + S+WD PT+ + YK G M + EE +F H ++
Sbjct: 405 ELLRSKSQEGVRVLL----SIWDDPTSRSILGYKTDGVMATHDEETRR--FFKHSSVQVL 458
Query: 316 NFLCFENVLK 345
LC N K
Sbjct: 459 --LCPRNAGK 466
>sp|O88307|SORL_MOUSE Sortilin-related receptor precursor (Sorting protein-related receptor
containing LDLR class A repeats) (mSorLA) (SorLA-1)
(Low-density lipoprotein receptor relative with 11
ligand-binding repeats) (LDLR relative with 11
ligand-binding repeats) (LR11) (Gp250)
Length = 2215
Score = 29.6 bits (65), Expect = 3.6
Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 5/88 (5%)
Frame = +1
Query: 1 NYDKSELRLTEVME-----DPHICERMWQYQLHKERKDSTRFAKGTPQTFETLKKLSARG 165
+YD++ L T M+ + ++ W + HK+ K + F G+ + + +
Sbjct: 1757 SYDENSLSFTLTMDGDIKVNGYVVNLFWSFDAHKQEKKTLSFRGGSALSHKVSNLTAHTS 1816
Query: 166 VEIKMDVPESLWDQPTAETSSLYKQCGP 249
EI L D P A L + P
Sbjct: 1817 YEISAWAKTDLGDSPLAFEHILTRGSSP 1844
>sp|Q57959|SYK_METJA Lysyl-tRNA synthetase (Lysine--tRNA ligase) (LysRS)
Length = 530
Score = 29.3 bits (64), Expect = 4.7
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 196 LWDQPTAETSSLYKQCGPMVSQYEEVIEDWYFNHQDKD 309
L +PT K+ +V +Y+ +ED+YFN++DKD
Sbjct: 306 LRSKPTKHIDFDLKKIPDLVDEYDR-LEDFYFNNKDKD 342
>sp|P0C0K7|EPHB6_RAT Ephrin type-B receptor 6 precursor (Tyrosine-protein
kinase-defective receptor EPH-6)
Length = 1013
Score = 29.3 bits (64), Expect = 4.7
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 106 RFAKGTPQTFETLKKLSARGVEIKMDVPESLWDQPTAETSSLYKQCGPMVSQYEEVI 276
R +GT T E L++ S+ G+ +K + S +D P L ++ P + EEVI
Sbjct: 613 RKRRGTGYT-EQLQQYSSPGLGVKYYIDPSTYDDPCQAIRELAREVDPTYIKIEEVI 668
>sp|O08644|EPHB6_MOUSE Ephrin type-B receptor 6 precursor (Tyrosine-protein
kinase-defective receptor EPH-6) (MEP)
Length = 1014
Score = 29.3 bits (64), Expect = 4.7
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +1
Query: 106 RFAKGTPQTFETLKKLSARGVEIKMDVPESLWDQPTAETSSLYKQCGPMVSQYEEVI 276
R +GT T E L++ S+ G+ +K + S +D P L ++ P + EEVI
Sbjct: 614 RKRRGTGYT-EQLQQYSSPGLGVKYYIDPSTYDDPCQAIRELAREVDPTYIKIEEVI 669
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,884,017
Number of Sequences: 369166
Number of extensions: 995278
Number of successful extensions: 2733
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2733
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2733320975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)