Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_H11
(635 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18067|RAB7_CANFA Ras-related protein Rab-7 167 2e-41
sp|P51150|RAB7_MOUSE Ras-related protein Rab-7 >gi|1709999|... 166 4e-41
sp|P09527|RAB7_RAT Ras-related protein Rab-7 (RAS-related p... 166 4e-41
sp|O97572|RAB7_RABIT Ras-related protein Rab-7 158 1e-38
sp|Q9C2L8|RAB7_NEUCR Probable Ras-related protein Rab7 144 1e-34
sp|P36411|RAB7_DICDI Ras-related protein Rab7 141 2e-33
sp|O94655|YPT7_SCHPO Ras-related protein ypt7 133 4e-31
sp|O24461|RAB7_PRUAR Ras-related protein Rab7 125 1e-28
sp|Q9XER8|RAB7_GOSHI Ras-related protein Rab7 124 2e-28
sp|Q39573|YPTC5_CHLRE GTP-binding protein YPTC5 122 8e-28
>sp|P18067|RAB7_CANFA Ras-related protein Rab-7
Length = 207
Score = 167 bits (423), Expect = 2e-41
Identities = 78/124 (62%), Positives = 96/124 (77%), Gaps = 1/124 (0%)
Frame = +3
Query: 3 CVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLESRAVSIRRAQQWC 182
CVLV+DV PNTFKTLDSWRDEFLIQ+ PRDPE FPFVV+GNK+DLE+R V+ +RAQ WC
Sbjct: 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC 143
Query: 183 QSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLN-DDQHSNRQN 359
SK +IPYFE SAKEA+NVEQAF +AR AL QE +V++ ++FP I L+ +D+
Sbjct: 144 YSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKTSAE 203
Query: 360 RCGC 371
C C
Sbjct: 204 SCSC 207
>sp|P51150|RAB7_MOUSE Ras-related protein Rab-7
sp|P51149|RAB7_HUMAN Ras-related protein Rab-7
Length = 207
Score = 166 bits (421), Expect = 4e-41
Identities = 78/124 (62%), Positives = 96/124 (77%), Gaps = 1/124 (0%)
Frame = +3
Query: 3 CVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLESRAVSIRRAQQWC 182
CVLV+DV PNTFKTLDSWRDEFLIQ+ PRDPE FPFVV+GNK+DLE+R V+ +RAQ WC
Sbjct: 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC 143
Query: 183 QSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLN-DDQHSNRQN 359
SK +IPYFE SAKEA+NVEQAF +AR AL QE +V++ ++FP I L+ +D+
Sbjct: 144 YSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNDRAKASAE 203
Query: 360 RCGC 371
C C
Sbjct: 204 SCSC 207
>sp|P09527|RAB7_RAT Ras-related protein Rab-7 (RAS-related protein P23) (RAS-related
protein BRL-RAS)
Length = 207
Score = 166 bits (421), Expect = 4e-41
Identities = 77/124 (62%), Positives = 96/124 (77%), Gaps = 1/124 (0%)
Frame = +3
Query: 3 CVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLESRAVSIRRAQQWC 182
CVLV+DV PNTFKTLDSWRDEFLIQ+ PRDPE FPFVV+GNK+DLE+R V+ +RAQ WC
Sbjct: 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC 143
Query: 183 QSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLNDDQHSNRQ-N 359
SK +IPYFE SAKEA+NVEQAF +AR AL QE +V++ ++FP I L+ ++ +
Sbjct: 144 YSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPIKLDKNERAKASAE 203
Query: 360 RCGC 371
C C
Sbjct: 204 SCSC 207
>sp|O97572|RAB7_RABIT Ras-related protein Rab-7
Length = 207
Score = 158 bits (400), Expect = 1e-38
Identities = 75/124 (60%), Positives = 94/124 (75%), Gaps = 1/124 (0%)
Frame = +3
Query: 3 CVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLESRAVSIRRAQQWC 182
CVLV+DV PNTFKTLDSWR EFLIQ+ PRDPE FPFVV+GNK+DLE+R V+ +RAQ W
Sbjct: 84 CVLVFDVTAPNTFKTLDSWRLEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWS 143
Query: 183 QSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLN-DDQHSNRQN 359
SK +IPYFE SAKEA+NVEQAF +AR AL QE +V++ ++FP + L+ +D+
Sbjct: 144 YSKNNIPYFETSAKEAINVEQAFQTIARNALKQETEVELYNEFPEPMKLDKNDRAKTSAE 203
Query: 360 RCGC 371
C C
Sbjct: 204 SCSC 207
>sp|Q9C2L8|RAB7_NEUCR Probable Ras-related protein Rab7
Length = 205
Score = 144 bits (364), Expect = 1e-34
Identities = 72/127 (56%), Positives = 89/127 (70%), Gaps = 4/127 (3%)
Frame = +3
Query: 3 CVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLE--SRAVSIRRAQQ 176
CVLVYDV +F LDSWRDEFLIQ+ PRDP+ FPFVV+GNK+D+E R +S +RA
Sbjct: 84 CVLVYDVNNSKSFDALDSWRDEFLIQASPRDPDNFPFVVLGNKIDMEESKRVISTKRAMT 143
Query: 177 WCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDF--PTQIHLNDDQHSN 350
+CQSKG+IPYFE SAKEA+NVEQAF +AR AL QE + DF P IH+ +D
Sbjct: 144 FCQSKGNIPYFETSAKEAINVEQAFEVIARNALMQEESEEFSGDFQDPINIHIEND---- 199
Query: 351 RQNRCGC 371
++ C C
Sbjct: 200 -RDGCAC 205
>sp|P36411|RAB7_DICDI Ras-related protein Rab7
Length = 203
Score = 141 bits (355), Expect = 2e-33
Identities = 70/122 (57%), Positives = 87/122 (71%), Gaps = 1/122 (0%)
Frame = +3
Query: 3 CVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLES-RAVSIRRAQQW 179
CVL YDV + TF+ LDSWRDEFLIQ+GPRDP+ FPFVV+GNK+DLE+ R VS +RA W
Sbjct: 84 CVLCYDVNVAKTFENLDSWRDEFLIQAGPRDPDNFPFVVLGNKIDLENQRVVSQKRAASW 143
Query: 180 CQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLNDDQHSNRQN 359
CQSKG+IPYFE SAKEA+NVEQAF +AR A+ E+ + PT I + + +
Sbjct: 144 CQSKGNIPYFETSAKEAINVEQAFQTIARNAIKLED--GLVFPIPTNIQVIPEPQPAKSG 201
Query: 360 RC 365
C
Sbjct: 202 CC 203
>sp|O94655|YPT7_SCHPO Ras-related protein ypt7
Length = 205
Score = 133 bits (334), Expect = 4e-31
Identities = 66/125 (52%), Positives = 90/125 (72%), Gaps = 2/125 (1%)
Frame = +3
Query: 3 CVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLE--SRAVSIRRAQQ 176
CVLVYDV +F+TLDSWRDEFLIQ+ P +PE FPF+++GNKVD+E R VS +A
Sbjct: 84 CVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDVEEQKRMVSKSKALA 143
Query: 177 WCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLNDDQHSNRQ 356
+CQ++G+IPYFE SAKEA+NV++AF VA+ AL + DI +DF IHL+ + +++
Sbjct: 144 FCQARGEIPYFETSAKEAINVQEAFETVAKLALENMDSDDIAADFTDPIHLDME---SQK 200
Query: 357 NRCGC 371
C C
Sbjct: 201 TSCYC 205
>sp|O24461|RAB7_PRUAR Ras-related protein Rab7
Length = 207
Score = 125 bits (313), Expect = 1e-28
Identities = 62/126 (49%), Positives = 84/126 (66%), Gaps = 3/126 (2%)
Frame = +3
Query: 3 CVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLE---SRAVSIRRAQ 173
CVLVYDV + +F+ L++WR+EFLIQ+ P DPE FPFVV+GNK+D++ SR VS ++A+
Sbjct: 84 CVLVYDVNVMKSFENLNNWREEFLIQATPSDPENFPFVVLGNKIDVDGGNSRVVSEKKAK 143
Query: 174 QWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLNDDQHSNR 353
WC SKG+IPYFE SAKE NV+ AF +A+ AL E + +I P I + R
Sbjct: 144 AWCASKGNIPYFETSAKEGFNVDDAFQCIAKNALNNEPEEEIY--LPDTIDVAGGGRQQR 201
Query: 354 QNRCGC 371
+ C C
Sbjct: 202 SSGCEC 207
>sp|Q9XER8|RAB7_GOSHI Ras-related protein Rab7
Length = 207
Score = 124 bits (311), Expect = 2e-28
Identities = 63/126 (50%), Positives = 82/126 (65%), Gaps = 3/126 (2%)
Frame = +3
Query: 3 CVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDLE---SRAVSIRRAQ 173
CVLV+DV + +F L++WR+EFLIQ+ P DPE FPFVV+GNKVD++ SR VS ++A+
Sbjct: 84 CVLVHDVNVMKSFDNLNNWREEFLIQASPSDPENFPFVVLGNKVDVDGGNSRVVSEKKAK 143
Query: 174 QWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLNDDQHSNR 353
WC SKG+IPYFE SAKE NV+ AF +AR AL E + +I P I + R
Sbjct: 144 AWCASKGNIPYFETSAKEGFNVDAAFECIARNALKNEPEEEIY--LPETIDVASGGRPQR 201
Query: 354 QNRCGC 371
C C
Sbjct: 202 STGCEC 207
>sp|Q39573|YPTC5_CHLRE GTP-binding protein YPTC5
Length = 206
Score = 122 bits (306), Expect = 8e-28
Identities = 61/126 (48%), Positives = 83/126 (65%), Gaps = 3/126 (2%)
Frame = +3
Query: 3 CVLVYDVAMPNTFKTLDSWRDEFLIQSGPRDPEKFPFVVIGNKVDL---ESRAVSIRRAQ 173
CVLV+DV +F LD+WRDEF+IQ+GP DP+ FPF+V+GNK+D SR VS ++A+
Sbjct: 84 CVLVFDVNNAKSFDDLDNWRDEFIIQAGPPDPDNFPFMVLGNKIDENGGSSRQVSEKKAK 143
Query: 174 QWCQSKGDIPYFECSAKEALNVEQAFNAVARAALAQENDVDICSDFPTQIHLNDDQHSNR 353
WC SKG IPYFE SAKE +NVE AF + R AL E + ++ P + +N + +
Sbjct: 144 AWCASKGSIPYFETSAKEDINVEAAFTCITRNALRNEKEEELF--MPDAVDMNTT--ATQ 199
Query: 354 QNRCGC 371
+ R GC
Sbjct: 200 RKRAGC 205
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,415,419
Number of Sequences: 369166
Number of extensions: 1333893
Number of successful extensions: 3672
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3538
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5121172350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)