Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_H05
(886 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P09572|AT1A1_CHICK Sodium/potassium-transporting ATPase ... 33 1.1
sp|P06685|AT1A1_RAT Sodium/potassium-transporting ATPase al... 33 1.1
sp|Q8VDN2|AT1A1_MOUSE Sodium/potassium-transporting ATPase ... 33 1.1
sp|P30714|AT1A1_BUFMA Sodium/potassium-transporting ATPase ... 33 1.1
sp|Q965T1|U197_CAEEL Hypothetical UPF0197 protein Y57E12AM.... 33 1.1
sp|P50993|AT1A2_HUMAN Sodium/potassium-transporting ATPase ... 33 1.4
sp|P24797|AT1A2_CHICK Sodium/potassium-transporting ATPase ... 33 1.4
sp|P50997|AT1A1_CANFA Sodium/potassium-transporting ATPase ... 32 1.8
sp|Q9YH26|AT1A1_OREMO Sodium/potassium-transporting ATPase ... 32 1.8
sp|P13637|AT1A3_HUMAN Sodium/potassium-transporting ATPase ... 32 1.8
>sp|P09572|AT1A1_CHICK Sodium/potassium-transporting ATPase alpha-1 chain precursor
(Sodium pump 1) (Na+/K+ ATPase 1)
Length = 1021
Score = 33.1 bits (74), Expect = 1.1
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 2/111 (1%)
Frame = +1
Query: 292 GGMTVVAGILGVVVGTESGRR-LRKIYPTADTLVCGVGLILSAPFFLVSLILAKYHYNWS 468
G TV+ I + G E G+ + L+ GV + L FF++SLIL Y W
Sbjct: 260 GDRTVMGRIASLASGLEGGKTPIAMEIEHFIHLITGVAVFLGVSFFILSLIL---EYTWL 316
Query: 469 LATIFITQTFLC-LNWALVTDMTMSVVIPSRRATASAYQMILSHAFGDAGS 618
A IF+ + + L+ +T+ + + ++R + A G GS
Sbjct: 317 EAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVGTLGS 367
>sp|P06685|AT1A1_RAT Sodium/potassium-transporting ATPase alpha-1 chain precursor
(Sodium pump 1) (Na+/K+ ATPase 1)
Length = 1023
Score = 33.1 bits (74), Expect = 1.1
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Frame = +1
Query: 244 SNNPKKSDSEHVEYIFGGMTVVAGILGVVVGTESGRRLRKIYPTADT------LVCGVGL 405
S N + + + G TV+ I + G E G+ P A+ L+ GV +
Sbjct: 246 STNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQT-----PIAEEIEHFIHLITGVAV 300
Query: 406 ILSAPFFLVSLILAKYHYNWSLATIFITQTFLC-LNWALVTDMTMSVVIPSRR 561
L FF++SLIL Y W A IF+ + + L+ +T+ + + ++R
Sbjct: 301 FLGVSFFILSLIL---EYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKR 350
>sp|Q8VDN2|AT1A1_MOUSE Sodium/potassium-transporting ATPase alpha-1 chain precursor
(Sodium pump 1) (Na+/K+ ATPase 1)
Length = 1023
Score = 33.1 bits (74), Expect = 1.1
Identities = 29/113 (25%), Positives = 50/113 (44%), Gaps = 7/113 (6%)
Frame = +1
Query: 244 SNNPKKSDSEHVEYIFGGMTVVAGILGVVVGTESGRRLRKIYPTADT------LVCGVGL 405
S N + + + G TV+ I + G E G+ P A+ L+ GV +
Sbjct: 246 STNCVEGTARGIVVYTGDRTVMGRIATLASGLEGGQT-----PIAEEIEHFIHLITGVAV 300
Query: 406 ILSAPFFLVSLILAKYHYNWSLATIFITQTFLC-LNWALVTDMTMSVVIPSRR 561
L FF++SLIL Y W A IF+ + + L+ +T+ + + ++R
Sbjct: 301 FLGVSFFILSLIL---EYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKR 350
>sp|P30714|AT1A1_BUFMA Sodium/potassium-transporting ATPase alpha-1 chain precursor
(Sodium pump 1) (Na+/K+ ATPase 1)
Length = 1023
Score = 33.1 bits (74), Expect = 1.1
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Frame = +1
Query: 292 GGMTVVAGILGVVVGTESGRRLRKIYPTADTL------VCGVGLILSAPFFLVSLILAKY 453
G TV+ I + G E G+ P A + + GV + L FF++SLIL
Sbjct: 262 GDRTVMGRIATLASGLEGGQT-----PIAVEIGHFIHIITGVAVFLGVSFFILSLIL--- 313
Query: 454 HYNWSLATIFITQTFLC-LNWALVTDMTMSVVIPSRR 561
HY W A IF+ + + L+ +T+ + + ++R
Sbjct: 314 HYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKR 350
>sp|Q965T1|U197_CAEEL Hypothetical UPF0197 protein Y57E12AM.1 in chromosom V
Length = 79
Score = 33.1 bits (74), Expect = 1.1
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1
Query: 370 PTADTLVCGVGLILSAPFFLVSLILAKYHYNWSLATIFITQT 495
P T +CGVGL+L A F ++ + KY+ N L +FI T
Sbjct: 19 PLLTTFLCGVGLLLLATFTMIQVTSTKYNRN-LLKELFIAAT 59
>sp|P50993|AT1A2_HUMAN Sodium/potassium-transporting ATPase alpha-2 chain precursor
(Sodium pump 2) (Na+/K+ ATPase 2)
Length = 1020
Score = 32.7 bits (73), Expect = 1.4
Identities = 28/108 (25%), Positives = 49/108 (45%), Gaps = 2/108 (1%)
Frame = +1
Query: 244 SNNPKKSDSEHVEYIFGGMTVVAGILGVVVGTESGRR-LRKIYPTADTLVCGVGLILSAP 420
S N + + + G TV+ I + G E GR + L+ GV + L
Sbjct: 244 STNCVEGTARGIVIATGDRTVMGRIATLASGLEVGRTPIAMEIEHFIQLITGVAVFLGVS 303
Query: 421 FFLVSLILAKYHYNWSLATIFITQTFLC-LNWALVTDMTMSVVIPSRR 561
FF++SLIL Y+W A IF+ + + L+ +T+ + + ++R
Sbjct: 304 FFVLSLILG---YSWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKR 348
>sp|P24797|AT1A2_CHICK Sodium/potassium-transporting ATPase alpha-2 chain (Sodium pump 2)
(Na+/K+ ATPase 2)
Length = 1017
Score = 32.7 bits (73), Expect = 1.4
Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +1
Query: 292 GGMTVVAGILGVVVGTESGRR-LRKIYPTADTLVCGVGLILSAPFFLVSLILAKYHYNWS 468
G TV+ I + G E GR + L+ GV + L FF++SLIL Y W
Sbjct: 257 GDRTVMGRIASLASGLEVGRTPIAMEIEHFIRLITGVAVFLGLSFFILSLILG---YTWL 313
Query: 469 LATIFITQTFLC-LNWALVTDMTMSVVIPSRR 561
A IF+ + + L+ +T+ + + ++R
Sbjct: 314 EAVIFLIGIIVANVPEGLLATVTVCLTLTAKR 345
>sp|P50997|AT1A1_CANFA Sodium/potassium-transporting ATPase alpha-1 chain precursor
(Sodium pump 1) (Na+/K+ ATPase 1)
Length = 1021
Score = 32.3 bits (72), Expect = 1.8
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Frame = +1
Query: 244 SNNPKKSDSEHVEYIFGGMTVVAGILGVVVGTESGRRLRKIYPTADTL------VCGVGL 405
S N K + + G TV+ I + G E G+ P A + + GV +
Sbjct: 244 STNCVKGTARGIVVYTGDRTVMGRIATLASGLEGGQT-----PIAAEIEHFIHIITGVAV 298
Query: 406 ILSAPFFLVSLILAKYHYNWSLATIFITQTFLC-LNWALVTDMTMSVVIPSRR 561
L FF++SLIL Y W A IF+ + + L+ +T+ + + ++R
Sbjct: 299 FLGVSFFILSLIL---EYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKR 348
>sp|Q9YH26|AT1A1_OREMO Sodium/potassium-transporting ATPase alpha-1 chain precursor
(Sodium pump 1) (Na+/K+ ATPase 1)
Length = 1023
Score = 32.3 bits (72), Expect = 1.8
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 18/98 (18%)
Frame = +1
Query: 322 GVVVGTESGRRLRKIYPTADTL-----------------VCGVGLILSAPFFLVSLILAK 450
G+V+ TE + +I A +L + GV + L FF++SLIL
Sbjct: 256 GIVINTEDRTVMGRIATLASSLEGGKTPIAIEIEHFIHIITGVAVFLGVSFFILSLILG- 314
Query: 451 YHYNWSLATIFITQTFLC-LNWALVTDMTMSVVIPSRR 561
YNW A IF+ + + L+ +T+ + + ++R
Sbjct: 315 --YNWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKR 350
>sp|P13637|AT1A3_HUMAN Sodium/potassium-transporting ATPase alpha-3 chain (Sodium pump 3)
(Na+/K+ ATPase 3) (Alpha(III))
Length = 1013
Score = 32.3 bits (72), Expect = 1.8
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 2/108 (1%)
Frame = +1
Query: 244 SNNPKKSDSEHVEYIFGGMTVVAGILGVVVGTESGRRLRKI-YPTADTLVCGVGLILSAP 420
S N + + V G TV+ I + G E G+ I L+ GV + L
Sbjct: 236 STNCVEGTARGVVVATGDRTVMGRIATLASGLEVGKTPIAIEIEHFIQLITGVAVFLGVS 295
Query: 421 FFLVSLILAKYHYNWSLATIFITQTFLC-LNWALVTDMTMSVVIPSRR 561
FF++SLIL Y W A IF+ + + L+ +T+ + + ++R
Sbjct: 296 FFILSLILG---YTWLEAVIFLIGIIVANVPEGLLATVTVCLTVTAKR 340
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,693,343
Number of Sequences: 369166
Number of extensions: 2323905
Number of successful extensions: 6754
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6752
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8838279920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)