Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_G23
(472 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q60HC9|TPIS_MACFA Triosephosphate isomerase (TIM) (Trios... 186 2e-47
sp|P60174|TPIS_HUMAN Triosephosphate isomerase (TIM) (Trios... 185 4e-47
sp|P00939|TPIS_RABIT Triosephosphate isomerase (TIM) (Trios... 185 4e-47
sp|P54714|TPIS_CANFA Triosephosphate isomerase (TIM) (Trios... 185 4e-47
sp|P00940|TPIS_CHICK Triosephosphate isomerase (TIM) (Trios... 185 5e-47
sp|P48500|TPIS_RAT Triosephosphate isomerase (TIM) (Triose-... 184 9e-47
sp|P17751|TPIS_MOUSE Triosephosphate isomerase (TIM) (Trios... 184 1e-46
sp|P46226|TPIS_SECCE Triosephosphate isomerase, cytosolic (... 182 3e-46
sp|P12863|TPIS_MAIZE Triosephosphate isomerase, cytosolic (... 180 1e-45
sp|P34937|TPIS_HORVU Triosephosphate isomerase, cytosolic (... 175 5e-44
>sp|Q60HC9|TPIS_MACFA Triosephosphate isomerase (TIM) (Triose-phosphate isomerase)
sp|P15426|TPIS_MACMU Triosephosphate isomerase (TIM) (Triose-phosphate isomerase)
Length = 249
Score = 186 bits (473), Expect = 2e-47
Identities = 89/118 (75%), Positives = 103/118 (87%)
Frame = +2
Query: 2 KLDERESNKTNEVCFRQLKEIAANIKDWTRVVIAYEPVWAIGTGKTASPAQAQEVHKCVR 181
KLDERE+ T +V F Q K IA N+KDW++VV+AYEPVWAIGTGKTA+P QAQEVH+ +R
Sbjct: 131 KLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLR 190
Query: 182 DWLKTNVSEEVAKTTRILYGGSVTSGNCKELASQPDVDGFLVGGASLKPEFIDIINAK 355
WLK+NVSE VA++TRI+YGGSVT CKELASQPDVDGFLVGGASLKPEF+DIINAK
Sbjct: 191 GWLKSNVSEAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAK 248
>sp|P60174|TPIS_HUMAN Triosephosphate isomerase (TIM) (Triose-phosphate isomerase)
sp|P60175|TPIS_PANTR Triosephosphate isomerase (TIM) (Triose-phosphate isomerase)
Length = 249
Score = 185 bits (470), Expect = 4e-47
Identities = 88/118 (74%), Positives = 103/118 (87%)
Frame = +2
Query: 2 KLDERESNKTNEVCFRQLKEIAANIKDWTRVVIAYEPVWAIGTGKTASPAQAQEVHKCVR 181
KLDERE+ T +V F Q K IA N+KDW++VV+AYEPVWAIGTGKTA+P QAQEVH+ +R
Sbjct: 131 KLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLR 190
Query: 182 DWLKTNVSEEVAKTTRILYGGSVTSGNCKELASQPDVDGFLVGGASLKPEFIDIINAK 355
WLK+NVS+ VA++TRI+YGGSVT CKELASQPDVDGFLVGGASLKPEF+DIINAK
Sbjct: 191 GWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAK 248
>sp|P00939|TPIS_RABIT Triosephosphate isomerase (TIM) (Triose-phosphate isomerase)
Length = 248
Score = 185 bits (470), Expect = 4e-47
Identities = 88/118 (74%), Positives = 103/118 (87%)
Frame = +2
Query: 2 KLDERESNKTNEVCFRQLKEIAANIKDWTRVVIAYEPVWAIGTGKTASPAQAQEVHKCVR 181
KLDERE+ T +V F Q K IA N+KDW++VV+AYEPVWAIGTGKTA+P QAQEVH+ +R
Sbjct: 130 KLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLR 189
Query: 182 DWLKTNVSEEVAKTTRILYGGSVTSGNCKELASQPDVDGFLVGGASLKPEFIDIINAK 355
WLK+NVS+ VA++TRI+YGGSVT CKELASQPDVDGFLVGGASLKPEF+DIINAK
Sbjct: 190 GWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAK 247
>sp|P54714|TPIS_CANFA Triosephosphate isomerase (TIM) (Triose-phosphate isomerase)
Length = 249
Score = 185 bits (470), Expect = 4e-47
Identities = 88/118 (74%), Positives = 103/118 (87%)
Frame = +2
Query: 2 KLDERESNKTNEVCFRQLKEIAANIKDWTRVVIAYEPVWAIGTGKTASPAQAQEVHKCVR 181
KLDERE+ T +V F Q K IA N+KDW++VV+AYEPVWAIGTGKTA+P QAQEVH+ +R
Sbjct: 131 KLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLR 190
Query: 182 DWLKTNVSEEVAKTTRILYGGSVTSGNCKELASQPDVDGFLVGGASLKPEFIDIINAK 355
WLK+NVS+ VA++TRI+YGGSVT CKELASQPDVDGFLVGGASLKPEF+DIINAK
Sbjct: 191 GWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAK 248
>sp|P00940|TPIS_CHICK Triosephosphate isomerase (TIM) (Triose-phosphate isomerase)
Length = 248
Score = 185 bits (469), Expect = 5e-47
Identities = 88/118 (74%), Positives = 104/118 (88%)
Frame = +2
Query: 2 KLDERESNKTNEVCFRQLKEIAANIKDWTRVVIAYEPVWAIGTGKTASPAQAQEVHKCVR 181
KLDERE+ T +V F Q K IA N+KDW++VV+AYEPVWAIGTGKTA+P QAQEVH+ +R
Sbjct: 130 KLDEREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLR 189
Query: 182 DWLKTNVSEEVAKTTRILYGGSVTSGNCKELASQPDVDGFLVGGASLKPEFIDIINAK 355
WLK++VS+ VA++TRI+YGGSVT GNCKELASQ DVDGFLVGGASLKPEF+DIINAK
Sbjct: 190 GWLKSHVSDAVAQSTRIIYGGSVTGGNCKELASQHDVDGFLVGGASLKPEFVDIINAK 247
>sp|P48500|TPIS_RAT Triosephosphate isomerase (TIM) (Triose-phosphate isomerase)
Length = 249
Score = 184 bits (467), Expect = 9e-47
Identities = 89/118 (75%), Positives = 100/118 (84%)
Frame = +2
Query: 2 KLDERESNKTNEVCFRQLKEIAANIKDWTRVVIAYEPVWAIGTGKTASPAQAQEVHKCVR 181
KLDERE+ T +V F Q K IA N+KDW +VV+AYEPVWAIGTGKTA+P QAQEVH+ +R
Sbjct: 131 KLDEREAGITEKVVFEQTKAIADNVKDWCKVVLAYEPVWAIGTGKTATPQQAQEVHEKLR 190
Query: 182 DWLKTNVSEEVAKTTRILYGGSVTSGNCKELASQPDVDGFLVGGASLKPEFIDIINAK 355
WLK NVSE VA+ TRI+YGGSVT CKELASQPDVDGFLVGGASLKPEF+DIINAK
Sbjct: 191 GWLKCNVSEGVAQCTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAK 248
>sp|P17751|TPIS_MOUSE Triosephosphate isomerase (TIM) (Triose-phosphate isomerase)
Length = 249
Score = 184 bits (466), Expect = 1e-46
Identities = 87/118 (73%), Positives = 103/118 (87%)
Frame = +2
Query: 2 KLDERESNKTNEVCFRQLKEIAANIKDWTRVVIAYEPVWAIGTGKTASPAQAQEVHKCVR 181
KLDERE+ T +V F Q K IA N+KDW++VV+AYEPVWAIGTGKTA+P QAQEVH+ +R
Sbjct: 131 KLDEREAGITEKVVFEQTKVIADNVKDWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLR 190
Query: 182 DWLKTNVSEEVAKTTRILYGGSVTSGNCKELASQPDVDGFLVGGASLKPEFIDIINAK 355
WLK+NV++ VA++TRI+YGGSVT CKELASQPDVDGFLVGGASLKPEF+DIINAK
Sbjct: 191 GWLKSNVNDGVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLKPEFVDIINAK 248
>sp|P46226|TPIS_SECCE Triosephosphate isomerase, cytosolic (TIM) (Triose-phosphate
isomerase)
Length = 253
Score = 182 bits (463), Expect = 3e-46
Identities = 89/116 (76%), Positives = 99/116 (85%)
Frame = +2
Query: 5 LDERESNKTNEVCFRQLKEIAANIKDWTRVVIAYEPVWAIGTGKTASPAQAQEVHKCVRD 184
L++RE+ T EV Q K IA IKDWT VV+AYEPVWAIGTGK ASPAQAQEVH +RD
Sbjct: 132 LEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRD 191
Query: 185 WLKTNVSEEVAKTTRILYGGSVTSGNCKELASQPDVDGFLVGGASLKPEFIDIINA 352
WLKTNVS EVA++TRI+YGGSVT +CKELA+QPDVDGFLVGGASLKPEFIDIINA
Sbjct: 192 WLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGFLVGGASLKPEFIDIINA 247
>sp|P12863|TPIS_MAIZE Triosephosphate isomerase, cytosolic (TIM) (Triose-phosphate
isomerase)
Length = 253
Score = 180 bits (457), Expect = 1e-45
Identities = 86/116 (74%), Positives = 99/116 (85%)
Frame = +2
Query: 5 LDERESNKTNEVCFRQLKEIAANIKDWTRVVIAYEPVWAIGTGKTASPAQAQEVHKCVRD 184
L++RE+ T +V Q K IA IKDW+ VV+AYEPVWAIGTGK A+PAQAQEVH +RD
Sbjct: 132 LEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRD 191
Query: 185 WLKTNVSEEVAKTTRILYGGSVTSGNCKELASQPDVDGFLVGGASLKPEFIDIINA 352
WLKTN S EVA++TRI+YGGSVT+ NCKELA+QPDVDGFLVGGASLKPEFIDIINA
Sbjct: 192 WLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLKPEFIDIINA 247
>sp|P34937|TPIS_HORVU Triosephosphate isomerase, cytosolic (TIM) (Triose-phosphate
isomerase)
Length = 253
Score = 175 bits (443), Expect = 5e-44
Identities = 85/116 (73%), Positives = 97/116 (83%)
Frame = +2
Query: 5 LDERESNKTNEVCFRQLKEIAANIKDWTRVVIAYEPVWAIGTGKTASPAQAQEVHKCVRD 184
L++RE+ T EV Q K IA IKDW+ V+AYEPVWAIGTGK A+PAQAQEVH +RD
Sbjct: 132 LEQREAGSTMEVVAEQTKAIAGKIKDWSNGVVAYEPVWAIGTGKVATPAQAQEVHANLRD 191
Query: 185 WLKTNVSEEVAKTTRILYGGSVTSGNCKELASQPDVDGFLVGGASLKPEFIDIINA 352
WLKTNVS EVA++TRI+YGGSVT +CKELA+Q DVDGFLVGGASLKPEFIDIINA
Sbjct: 192 WLKTNVSPEVAESTRIIYGGSVTGASCKELAAQADVDGFLVGGASLKPEFIDIINA 247
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,388,279
Number of Sequences: 369166
Number of extensions: 655424
Number of successful extensions: 2135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2019
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2733320975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)