Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_G08
(762 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P29581|YPZ6_METTF Hypothetical 14.5 kDa protein (ORF6') 31 4.2
sp|P29580|YPV6_METTF Hypothetical 14.5 kDa protein (ORF6) 30 5.4
sp|Q6X784|ZPBP2_HUMAN Zona pellucida-binding protein 2 prec... 30 9.3
>sp|P29581|YPZ6_METTF Hypothetical 14.5 kDa protein (ORF6')
Length = 122
Score = 30.8 bits (68), Expect = 4.2
Identities = 14/60 (23%), Positives = 28/60 (46%)
Frame = +2
Query: 185 LSFVDHILECKDKFNKKNRDIYIFSDDGFAIGVAFILKVLDLYKEFDSLHWFQSIYEHYD 364
++++ +L +DKF K RD+++F + + D F LH + EH++
Sbjct: 36 VNYLFMLLPFRDKFKLKKRDVWLFKKLSYKFQARPFMVTFDKMLSFYPLHALEEAGEHFE 95
>sp|P29580|YPV6_METTF Hypothetical 14.5 kDa protein (ORF6)
Length = 122
Score = 30.4 bits (67), Expect = 5.4
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +2
Query: 185 LSFVDHILECKDKFNKKNRDIYIFSDDGFAIGVAFILKVLDLYKEFDSLHWFQSIYEHYD 364
++++ +L +DKF K RD+++F + L D F LH + EH++
Sbjct: 36 VNYLFMLLPFRDKFKLKKRDVWLFKKLSYKFKARPFLVTFDKMLSFYPLHALEEGGEHFE 95
>sp|Q6X784|ZPBP2_HUMAN Zona pellucida-binding protein 2 precursor (ZPBP-like protein)
Length = 338
Score = 29.6 bits (65), Expect = 9.3
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Frame = +2
Query: 125 FRSKKNVHSHNFFVLLPALTLSFVDHILE------CKDKFNKKNR 241
FRS+ + HNF LPA + FVDH L+ C+ F K R
Sbjct: 245 FRSQAYIFYHNFNKTLPA--MHFVDHSLQVVRLDSCRPGFGKNER 287
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,322,864
Number of Sequences: 369166
Number of extensions: 1370410
Number of successful extensions: 3401
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3401
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7018522000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)