Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_G07
(893 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P42637|TPM1_SCHMA Tropomyosin 1 (TMI) (Polypeptide 49) 304 2e-82
sp|Q26519|TPM_SCHJA Tropomyosin 302 7e-82
sp|Q95PU1|TPM_ECHMU Tropomyosin 301 2e-81
sp|Q26503|TPM_SCHHA Tropomyosin 300 4e-81
sp|P43689|TPM2_BIOGL Tropomyosin 2 (TMII) 290 3e-78
sp|O97192|TPM_HELAS Tropomyosin (Allergen Hel as 1) 287 3e-77
sp|Q23758|TPM_CLOSI Tropomyosin 284 2e-76
sp|Q9GZ71|TPM_HALDV Tropomyosin 282 1e-75
sp|P42638|TPM2_SCHMA Tropomyosin 2 (TMII) 278 1e-74
sp|P42636|TPM1_BIOGL Tropomyosin 1 (TMI) (Bg 39) 274 3e-73
>sp|P42637|TPM1_SCHMA Tropomyosin 1 (TMI) (Polypeptide 49)
Length = 284
Score = 304 bits (778), Expect = 2e-82
Identities = 166/240 (69%), Positives = 185/240 (77%)
Frame = +2
Query: 161 ELQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQTES 340
EL ++ AQ +CDEAQE L E KLE T+KRAT+AEAEVAA+TRRI+L+E DLE + S
Sbjct: 45 ELNNKMKQAQIDCDEAQETLQEQMNKLEETDKRATNAEAEVAAMTRRIRLLEEDLEVSSS 104
Query: 341 RFQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKYDE 520
R E KLE ASK AEESE+ RK LE RSIADDE+L QLE+Q KEAKYIAEDADRKYDE
Sbjct: 105 RLTETLTKLEEASKTAEESERGRKDLEIRSIADDERLNQLEDQQKEAKYIAEDADRKYDE 164
Query: 521 VARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYEDT 700
ARKLAIAEVD ER EARLE ESK +VVGNNMK+LEISEQE+AQREESYE+T
Sbjct: 165 AARKLAIAEVDFERAEARLEAAESKIVELEEELRVVGNNMKALEISEQESAQREESYEET 224
Query: 701 IRDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELDTAFAELTGY 880
IRDLTERLK VSKLQ+EVD LEDDLL+EKE+YKALS ELD FAELTGY
Sbjct: 225 IRDLTERLKAAEQRATEAERQVSKLQNEVDHLEDDLLAEKERYKALSGELDQTFAELTGY 284
>sp|Q26519|TPM_SCHJA Tropomyosin
Length = 284
Score = 302 bits (774), Expect = 7e-82
Identities = 165/242 (68%), Positives = 185/242 (76%)
Frame = +2
Query: 155 MQELQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQT 334
+ EL ++ AQ +CDE QE L E KLE TEKRAT+AEA+VAA+TRRI+L+E DLE +
Sbjct: 43 ISELNTKMKQAQIDCDEVQETLQEQMNKLEETEKRATNAEAQVAAMTRRIRLLEEDLEVS 102
Query: 335 ESRFQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKY 514
SR E KLE ASK AEESE+ RK LE RSIADDE+L QLE+Q KEAKYIAEDADRKY
Sbjct: 103 SSRLTETLTKLEEASKTAEESERGRKDLEIRSIADDERLNQLEDQQKEAKYIAEDADRKY 162
Query: 515 DEVARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYE 694
DE ARKLAIAEVD ER EARLE ESK +VVGNNMK+LEISEQE+AQREESYE
Sbjct: 163 DEAARKLAIAEVDFERAEARLEAAESKIVELEEELRVVGNNMKALEISEQESAQREESYE 222
Query: 695 DTIRDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELDTAFAELT 874
+TIRDLTERLK VSKLQ+EVD LEDDLL+EKE+YKALS ELD FAELT
Sbjct: 223 ETIRDLTERLKAAEQRATEAERQVSKLQNEVDHLEDDLLAEKERYKALSGELDQTFAELT 282
Query: 875 GY 880
GY
Sbjct: 283 GY 284
>sp|Q95PU1|TPM_ECHMU Tropomyosin
Length = 284
Score = 301 bits (770), Expect = 2e-81
Identities = 162/268 (60%), Positives = 195/268 (72%)
Frame = +2
Query: 77 NAGEKSTSXXXXXXXXXXXXXXXXDAMQELQKSLQTAQQECDEAQEALAEANTKLEATEK 256
NA EK+ + + M + ++ Q E D QE+L EA +KLE TEK
Sbjct: 17 NALEKAINLENQLKEKAKDFEKKEEEMNDWLSKVKNIQTEVDTVQESLQEAISKLEETEK 76
Query: 257 RATDAEAEVAALTRRIQLIEADLEQTESRFQEASGKLEGASKDAEESEKNRKILETRSIA 436
RAT+AEAEVAA+TRRI+L+E D EQ+ R E S KL+ ASK AEESE+NRK LETRSI+
Sbjct: 77 RATNAEAEVAAMTRRIRLLEEDFEQSSGRLTETSTKLDDASKAAEESERNRKTLETRSIS 136
Query: 437 DDEKLAQLEEQVKEAKYIAEDADRKYDEVARKLAIAEVDLERTEARLENCESKTXXXXXX 616
DDE++AQLEEQVKEAKYIAEDA+RKYDE AR+LA+ EVDLER E+RLE ESK
Sbjct: 137 DDERMAQLEEQVKEAKYIAEDAERKYDEAARRLAVTEVDLERAESRLETSESKIVELEEE 196
Query: 617 XKVVGNNMKSLEISEQEAAQREESYEDTIRDLTERLKXXXXXXXXXXXXVSKLQSEVDRL 796
++VGNNMKSLE+SEQE+ QREESYE+TIRDLTERLK VSKLQ+EVDRL
Sbjct: 197 LRIVGNNMKSLEVSEQESLQREESYEETIRDLTERLKTAEQRAAEAERQVSKLQNEVDRL 256
Query: 797 EDDLLSEKEKYKALSDELDTAFAELTGY 880
ED+LLSEKE+Y+A+S ELDT FAELT +
Sbjct: 257 EDELLSEKERYRAISGELDTTFAELTSF 284
>sp|Q26503|TPM_SCHHA Tropomyosin
Length = 284
Score = 300 bits (768), Expect = 4e-81
Identities = 163/240 (67%), Positives = 184/240 (76%)
Frame = +2
Query: 161 ELQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQTES 340
EL ++ AQ +CDE QE L E KLE T+KRAT+AEAEVAA+TRRI+L+E DLE + S
Sbjct: 45 ELNTKMKQAQIDCDEVQETLQEQMNKLEETDKRATNAEAEVAAMTRRIRLLEEDLEVSSS 104
Query: 341 RFQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKYDE 520
R E KLE ASK AEESE+ RK LE RSIADDE+L QLE+Q KEAKYIAEDADRKYDE
Sbjct: 105 RLTETLTKLEEASKTAEESERGRKDLEIRSIADDERLNQLEDQQKEAKYIAEDADRKYDE 164
Query: 521 VARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYEDT 700
ARKLAIAEVD +R EARLE ESK +V+GNNMK+LEISEQE+AQREESYE+T
Sbjct: 165 AARKLAIAEVDFKRAEARLEAAESKIVELEEELRVIGNNMKALEISEQESAQREESYEET 224
Query: 701 IRDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELDTAFAELTGY 880
IRDLTERLK VSKLQ+EVD LEDDLL+EKE+YKALS ELD FAELTGY
Sbjct: 225 IRDLTERLKAAEQRATEAERQVSKLQNEVDHLEDDLLAEKERYKALSGELDQTFAELTGY 284
>sp|P43689|TPM2_BIOGL Tropomyosin 2 (TMII)
Length = 284
Score = 290 bits (743), Expect = 3e-78
Identities = 153/244 (62%), Positives = 182/244 (74%)
Frame = +2
Query: 149 DAMQELQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLE 328
+ LQK Q + D A E L EA TKLEA+EK + E++ A L RRIQL+E DLE
Sbjct: 41 EEFNNLQKKFSNLQNDFDTANEGLTEAQTKLEASEKHVAELESDTAGLNRRIQLLEEDLE 100
Query: 329 QTESRFQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADR 508
++E R Q A+ KLE ASK A+ESE+ RK+LE+RS+ADDE+L LE Q+KEAKYIAEDA+R
Sbjct: 101 RSEERLQSATEKLEEASKAADESERGRKVLESRSLADDERLDGLEAQLKEAKYIAEDAER 160
Query: 509 KYDEVARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREES 688
KYDE ARKLAI EVDLER EARLE E+K KVVGNNMKSLEISEQEA+QRE+S
Sbjct: 161 KYDEAARKLAITEVDLERAEARLEAAEAKIIELEEELKVVGNNMKSLEISEQEASQREDS 220
Query: 689 YEDTIRDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELDTAFAE 868
YE+TIRDLT+RLK VSKLQ EVDRLED+LL+EKE+YK++SDELD+ FAE
Sbjct: 221 YEETIRDLTQRLKDAENRATEAERTVSKLQKEVDRLEDELLAEKERYKSISDELDSTFAE 280
Query: 869 LTGY 880
L GY
Sbjct: 281 LAGY 284
>sp|O97192|TPM_HELAS Tropomyosin (Allergen Hel as 1)
Length = 284
Score = 287 bits (734), Expect = 3e-77
Identities = 152/242 (62%), Positives = 182/242 (75%)
Frame = +2
Query: 155 MQELQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQT 334
+ LQK + + D E L +ANTKLEA+EK+ + E+E A L RRIQL+E DLE++
Sbjct: 43 LNNLQKKFAILENDFDSINEQLLDANTKLEASEKKNAEIESETAGLQRRIQLLEEDLERS 102
Query: 335 ESRFQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKY 514
E R Q A+ KLE ASK A+ESE+ RK+LE+RS+ADDE+L LE Q+KEAKYIAEDA+RK+
Sbjct: 103 EERLQSATEKLEEASKAADESERGRKVLESRSLADDERLDGLEAQLKEAKYIAEDAERKF 162
Query: 515 DEVARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYE 694
DE ARKLAI EVDLER EARLE E+K KVVGNNMKSLEISEQEA+QRE+SYE
Sbjct: 163 DEAARKLAITEVDLERAEARLEAAEAKILELEEELKVVGNNMKSLEISEQEASQREDSYE 222
Query: 695 DTIRDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELDTAFAELT 874
+TIRDLT+RLK VSKLQ EVDRLED+LL+EKE+YKA SDELD+ FAEL
Sbjct: 223 ETIRDLTQRLKDAENRASEAERTVSKLQKEVDRLEDELLAEKERYKATSDELDSTFAELA 282
Query: 875 GY 880
GY
Sbjct: 283 GY 284
>sp|Q23758|TPM_CLOSI Tropomyosin
Length = 284
Score = 284 bits (727), Expect = 2e-76
Identities = 156/240 (65%), Positives = 178/240 (74%)
Frame = +2
Query: 161 ELQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQTES 340
EL ++ AQ E DE QEAL ++ K+E T+KRAT+AEAEVA +TRRI+L+E DLE + S
Sbjct: 45 ELNNRMKQAQTELDEIQEALQDSLNKMEETDKRATNAEAEVARMTRRIRLLEEDLEVSSS 104
Query: 341 RFQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKYDE 520
R E K + ASK AEESE+ RK LE RSIADDE L+QLE+Q KE KYIAEDADRKYDE
Sbjct: 105 RLTETLAKFDEASKTAEESERGRKELEIRSIADDEGLSQLEDQQKEGKYIAEDADRKYDE 164
Query: 521 VARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYEDT 700
ARKLAI EVD ER E+RLE ESK +VVGNNMK+LEISEQE+AQREESYE+T
Sbjct: 165 AARKLAIVEVDFERAESRLEAAESKIVELEEELRVVGNNMKALEISEQESAQREESYEET 224
Query: 701 IRDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELDTAFAELTGY 880
IRDLTERLK VSKLQ+EVD LEDDLLSEK +YK LS LD FAELTGY
Sbjct: 225 IRDLTERLKAAEQRAAEAERQVSKLQNEVDHLEDDLLSEKIRYKDLSGGLDQTFAELTGY 284
Score = 40.4 bits (93), Expect = 0.007
Identities = 51/242 (21%), Positives = 89/242 (36%), Gaps = 14/242 (5%)
Frame = +2
Query: 155 MQELQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQT 334
M ++K + + E + A E + +L+ E+ E E+ L R++ + +L++
Sbjct: 1 MDGIKKKMIAMKLEKENAMERAVQYEAQLKQKEEEQEKKETEIGELNNRMKQAQTELDEI 60
Query: 335 ESRFQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKY 514
+ Q++ K+E K A +E AE A
Sbjct: 61 QEALQDSLNKMEETDKRATNAE------------------------------AEVA---- 86
Query: 515 DEVARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEI---------SEQE 667
+ R++ + E DLE + +RL +K + K LEI S+ E
Sbjct: 87 -RMTRRIRLLEEDLEVSSSRLTETLAKFDEASKTAEESERGRKELEIRSIADDEGLSQLE 145
Query: 668 AAQREESY--EDTIRDLTERLKXXXXXXXXXXXXVSKL---QSEVDRLEDDLLSEKEKYK 832
Q+E Y ED R E + S+L +S++ LE++L K
Sbjct: 146 DQQKEGKYIAEDADRKYDEAARKLAIVEVDFERAESRLEAAESKIVELEEELRVVGNNMK 205
Query: 833 AL 838
AL
Sbjct: 206 AL 207
>sp|Q9GZ71|TPM_HALDV Tropomyosin
Length = 284
Score = 282 bits (721), Expect = 1e-75
Identities = 149/242 (61%), Positives = 178/242 (73%)
Frame = +2
Query: 155 MQELQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLEQT 334
+ LQK + + D E L EA KLE +EKR T+ E EV+ TR+I L+E DLE+
Sbjct: 43 LNNLQKKCANLENDFDNVNEQLQEAMAKLETSEKRVTEMEQEVSGTTRKITLLEEDLERN 102
Query: 335 ESRFQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADRKY 514
E R Q A+ +LE ASK A+ESE+ ++LE+RS+ADDE++ QLE Q+KEAKYIAEDA+RKY
Sbjct: 103 EERLQTATERLEEASKAADESERGARVLESRSLADDERIDQLEAQLKEAKYIAEDAERKY 162
Query: 515 DEVARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREESYE 694
DE ARKLAI EVDLER EARLE E+K KVVGNNMKSLEISEQEA+QRE+SYE
Sbjct: 163 DEAARKLAITEVDLERAEARLEAAEAKILELEEELKVVGNNMKSLEISEQEASQREDSYE 222
Query: 695 DTIRDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELDTAFAELT 874
+TIRDLT+RLK VSKLQ EVDRLED+LL+EKEKYKA+SDELD FAEL
Sbjct: 223 ETIRDLTQRLKDAENRATEAERTVSKLQKEVDRLEDELLAEKEKYKAISDELDQTFAELA 282
Query: 875 GY 880
GY
Sbjct: 283 GY 284
>sp|P42638|TPM2_SCHMA Tropomyosin 2 (TMII)
Length = 284
Score = 278 bits (712), Expect = 1e-74
Identities = 145/243 (59%), Positives = 187/243 (76%)
Frame = +2
Query: 149 DAMQELQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLE 328
+ + E+ K +Q + + AQ LAE NTKLE T+KRAT+AEAEVA+L +RI+ +E +LE
Sbjct: 41 EEVAEVLKKIQQVDTDKETAQTQLAETNTKLEETDKRATEAEAEVASLQKRIRQLEDELE 100
Query: 329 QTESRFQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADR 508
TE+R QEA+ KLE ASK A+ES++ RK+LE R+ AD+E++ QLEEQ+KE+ ++AEDADR
Sbjct: 101 STETRLQEATVKLEEASKAADESDRGRKVLENRTFADEERINQLEEQLKESTFMAEDADR 160
Query: 509 KYDEVARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREES 688
KYDE ARKLAI EV+LER E+RLE ESK ++VGNN+KSLEISEQEAAQREE+
Sbjct: 161 KYDEAARKLAITEVELERAESRLEAAESKITELEEELRIVGNNVKSLEISEQEAAQREEA 220
Query: 689 YEDTIRDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELDTAFAE 868
YE+ IRDLTERLK V+ LQ++ DRLED+L++EKEKYKALS+ELD+ FAE
Sbjct: 221 YEENIRDLTERLKAAEDRAQESERLVNTLQADADRLEDELVTEKEKYKALSEELDSTFAE 280
Query: 869 LTG 877
LTG
Sbjct: 281 LTG 283
>sp|P42636|TPM1_BIOGL Tropomyosin 1 (TMI) (Bg 39)
Length = 284
Score = 274 bits (700), Expect = 3e-73
Identities = 142/244 (58%), Positives = 176/244 (72%)
Frame = +2
Query: 149 DAMQELQKSLQTAQQECDEAQEALAEANTKLEATEKRATDAEAEVAALTRRIQLIEADLE 328
+ LQ Q + D A E L EA TKLEA+EK + E++ A L RRIQL+E DLE
Sbjct: 41 EEFNNLQNKFSNLQNDFDTANEGLTEAQTKLEASEKHVAELESDTAGLNRRIQLLEEDLE 100
Query: 329 QTESRFQEASGKLEGASKDAEESEKNRKILETRSIADDEKLAQLEEQVKEAKYIAEDADR 508
++E R Q A+ KLE ASK A+ESE+ RK+LE+RS+ADDE+L LE Q+KEAKYIAEDA+R
Sbjct: 101 RSEERLQSATEKLEEASKAADESERGRKVLESRSLADDERLDGLEAQLKEAKYIAEDAER 160
Query: 509 KYDEVARKLAIAEVDLERTEARLENCESKTXXXXXXXKVVGNNMKSLEISEQEAAQREES 688
KYDE ARKLAI EVDLER EARLE E+K +VGNN+K+L I +A+QRE+S
Sbjct: 161 KYDEAARKLAITEVDLERAEARLEAAEAKVWELDEELHIVGNNIKTLSIQNDQASQREDS 220
Query: 689 YEDTIRDLTERLKXXXXXXXXXXXXVSKLQSEVDRLEDDLLSEKEKYKALSDELDTAFAE 868
Y++TIRDLT+RLK VSKLQ EVDRLED+LL+EKE+YK++SDELD+ FAE
Sbjct: 221 YQETIRDLTQRLKDAENRATEAERTVSKLQKEVDRLEDELLAEKERYKSISDELDSTFAE 280
Query: 869 LTGY 880
L GY
Sbjct: 281 LAGY 284
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,409,595
Number of Sequences: 369166
Number of extensions: 714214
Number of successful extensions: 6294
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5813
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8982382310
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)