Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_G03
(527 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P79136|CAPZB_BOVIN F-actin capping protein beta subunit ... 174 1e-43
sp|P47757|CAPZB_MOUSE F-actin capping protein beta subunit ... 167 1e-41
sp|P47756|CAPZB_HUMAN F-actin capping protein beta subunit ... 167 1e-41
sp|P14315|CAPZB_CHICK F-actin capping protein beta subunit ... 167 2e-41
sp|P48603|CAPZB_DROME F-actin capping protein beta subunit 164 9e-41
sp|P34686|CAPZB_CAEEL F-actin capping protein beta subunit 152 6e-37
sp|P13021|CAPZB_DICDI F-actin capping protein beta subunit ... 127 2e-29
sp|Q9HGP5|CAPZB_SCHPO Probable F-actin capping protein beta... 98 1e-20
sp|Q9M9G7|CAPZB_ARATH Probable F-actin capping protein beta... 88 1e-17
sp|P13517|CAPZB_YEAST F-actin capping protein beta subunit 75 7e-14
>sp|P79136|CAPZB_BOVIN F-actin capping protein beta subunit (CapZ beta)
Length = 301
Score = 174 bits (441), Expect = 1e-43
Identities = 87/149 (58%), Positives = 109/149 (73%), Gaps = 1/149 (0%)
Frame = +3
Query: 3 DLDSGFAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNS 179
DLD GFAG +LIKKAGD K GCWDSIHV+EV+EK SGR A YKLTST+MLWL+T S
Sbjct: 152 DLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKS 211
Query: 180 ETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDS 359
+G NLGGSLTR EK+ +SD + HI NIGRLVEDMEN IR LN++YFG +K++V+
Sbjct: 212 GSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNG 271
Query: 360 LRSGLSKSVEDQQRKLCQDVKIAIQNKNQ 446
LRS + + + +Q L D+ A++ K Q
Sbjct: 272 LRSVQTFADKSKQEALKNDLVEALKRKQQ 300
>sp|P47757|CAPZB_MOUSE F-actin capping protein beta subunit (CapZ beta)
Length = 277
Score = 167 bits (424), Expect = 1e-41
Identities = 81/123 (65%), Positives = 96/123 (78%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 DLDSGFAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNS 179
DLD GFAG +LIKKAGD K GCWDSIHV+EV+EK SGR A YKLTST+MLWL+T S
Sbjct: 123 DLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKS 182
Query: 180 ETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDS 359
+G NLGGSLTR EK+ +SD + HI NIGRLVEDMEN IR LN++YFG +K++V+
Sbjct: 183 GSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNG 242
Query: 360 LRS 368
LRS
Sbjct: 243 LRS 245
>sp|P47756|CAPZB_HUMAN F-actin capping protein beta subunit (CapZ beta)
Length = 277
Score = 167 bits (424), Expect = 1e-41
Identities = 81/123 (65%), Positives = 96/123 (78%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 DLDSGFAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNS 179
DLD GFAG +LIKKAGD K GCWDSIHV+EV+EK SGR A YKLTST+MLWL+T S
Sbjct: 123 DLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKS 182
Query: 180 ETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDS 359
+G NLGGSLTR EK+ +SD + HI NIGRLVEDMEN IR LN++YFG +K++V+
Sbjct: 183 GSGTMNLGGSLTRQMEKDETVSDCSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNG 242
Query: 360 LRS 368
LRS
Sbjct: 243 LRS 245
>sp|P14315|CAPZB_CHICK F-actin capping protein beta subunit isoforms 1 and 2 (CapZ 36/32)
(CapZ B1 and B2) (Beta-actinin subunit II)
Length = 277
Score = 167 bits (422), Expect = 2e-41
Identities = 80/123 (65%), Positives = 97/123 (78%), Gaps = 1/123 (0%)
Frame = +3
Query: 3 DLDSGFAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNS 179
DLD GFAG +LIKKAGD K GCWDSIHV+EV+EK SGR A YKLTST+MLWL+T +
Sbjct: 123 DLDHGFAGVILIKKAGDGSKKIKGCWDSIHVVEVQEKSSGRTAHYKLTSTVMLWLQTNKT 182
Query: 180 ETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDS 359
+G NLGGSLTR EK+ +SD++ HI NIGRLVEDMEN IR LN++YFG +K++V+
Sbjct: 183 GSGTMNLGGSLTRQMEKDETVSDSSPHIANIGRLVEDMENKIRSTLNEIYFGKTKDIVNG 242
Query: 360 LRS 368
LRS
Sbjct: 243 LRS 245
>sp|P48603|CAPZB_DROME F-actin capping protein beta subunit
Length = 276
Score = 164 bits (416), Expect = 9e-41
Identities = 81/148 (54%), Positives = 107/148 (72%), Gaps = 1/148 (0%)
Frame = +3
Query: 3 DLDSGFAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNS 179
DLD GFA +LIKKAGD K GCWDSIHV+EV+EK +GR A YKLTST MLWL+T
Sbjct: 123 DLDHGFAAVILIKKAGDGSKMIRGCWDSIHVVEVQEKTTGRTAHYKLTSTAMLWLQTNKQ 182
Query: 180 ETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVDS 359
+G NLGGSLTR E++ +S+++ HI NIG++VE+MEN IR LN++YFG +K++V+
Sbjct: 183 GSGTMNLGGSLTRQQEQDANVSESSPHIANIGKMVEEMENKIRNTLNEIYFGKTKDIVNG 242
Query: 360 LRSGLSKSVEDQQRKLCQDVKIAIQNKN 443
LRS S + + QQ + QD+ AI +N
Sbjct: 243 LRSTQSLADQRQQAAMKQDLAAAILRRN 270
>sp|P34686|CAPZB_CAEEL F-actin capping protein beta subunit
Length = 270
Score = 152 bits (383), Expect = 6e-37
Identities = 75/148 (50%), Positives = 106/148 (71%), Gaps = 2/148 (1%)
Frame = +3
Query: 3 DLDSG-FAGAVLIKKAGD-IKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQN 176
DLD+G FAG VLIKK GD K+ TGCWDSIHVIE+ E+ R A YKLTSTIMLWL+T
Sbjct: 123 DLDNGGFAGIVLIKKEGDGAKNITGCWDSIHVIEITERA--RQAHYKLTSTIMLWLQTNK 180
Query: 177 SETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNLVD 356
S +G NLGGSLTR E + P++D N H+ N+GR++ED E+ +R +N++YFG +K ++
Sbjct: 181 SSSGVMNLGGSLTRQHEMDAPINDQNTHLANMGRMIEDQESKMRLTINEIYFGKTKKVMS 240
Query: 357 SLRSGLSKSVEDQQRKLCQDVKIAIQNK 440
LRS +S ++Q ++ +++ A+ N+
Sbjct: 241 DLRSTEKQSELEKQDEIVRELNNAMANR 268
>sp|P13021|CAPZB_DICDI F-actin capping protein beta subunit (CAP32)
Length = 272
Score = 127 bits (318), Expect = 2e-29
Identities = 68/150 (45%), Positives = 93/150 (62%), Gaps = 4/150 (2%)
Frame = +3
Query: 3 DLDSGFAGAVLIKKAGDIKSA----TGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLET 170
DLD FA VL+KK D G WDSIHV+EV+ G A YKLTST+ML +ET
Sbjct: 123 DLDDNFAAVVLMKKTQDQSKKGQPMRGTWDSIHVVEVK-LGKKDKAVYKLTSTVMLSIET 181
Query: 171 QNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKNL 350
N TG NL GSLTR EKE ++ + H VNIG++VEDME+ +R+ L +YFG +K +
Sbjct: 182 DNDNTGKVNLAGSLTRQDEKEYTFNEVDTHCVNIGKMVEDMESKLRQTLETIYFGKTKEV 241
Query: 351 VDSLRSGLSKSVEDQQRKLCQDVKIAIQNK 440
V++LR+ S ++++ L + AI N+
Sbjct: 242 VNTLRNATGNSELEKRKNLSNQIGSAIGNR 271
>sp|Q9HGP5|CAPZB_SCHPO Probable F-actin capping protein beta subunit
Length = 268
Score = 98.2 bits (243), Expect = 1e-20
Identities = 55/127 (43%), Positives = 75/127 (59%), Gaps = 5/127 (3%)
Frame = +3
Query: 3 DLDSGFAGAVLIKKAGDIKSATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLWLETQNSE 182
D D +AGAVLIKKA S+ WDSIHV E Y+LTSTI+L+L + + E
Sbjct: 121 DQDDSYAGAVLIKKASTSNSSG--WDSIHVFECLPTTETNVYDYRLTSTIILFLSSGSEE 178
Query: 183 TGCF-----NLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTSKN 347
NL G LTR T + +P +D + I N+G+LVE+ME +R L DVYFG +K+
Sbjct: 179 QSALPSKALNLSGHLTRQTSQRLPAADDDTEIANVGKLVEEMETRMRNFLQDVYFGKTKD 238
Query: 348 LVDSLRS 368
+++ RS
Sbjct: 239 IINQTRS 245
>sp|Q9M9G7|CAPZB_ARATH Probable F-actin capping protein beta subunit (CapZ-beta)
Length = 256
Score = 88.2 bits (217), Expect = 1e-17
Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 7/128 (5%)
Frame = +3
Query: 3 DLDSGFAGAVLIKKAGDIKS-------ATGCWDSIHVIEVEEKGSGRNARYKLTSTIMLW 161
D + GF LIKK G G WD+IHVI+V + A+Y LTSTIML
Sbjct: 119 DDNEGFVACFLIKKDGSKSGHGRRGCLEEGAWDAIHVIQVGSEEE-EMAQYCLTSTIMLS 177
Query: 162 LETQNSETGCFNLGGSLTRMTEKEVPLSDANNHIVNIGRLVEDMENSIRKQLNDVYFGTS 341
L T + +G F L GS+ R + E+ ++D H+ N+GR++E++E +R L+ VYFG +
Sbjct: 178 LTTDDESSGKFGLSGSIRRQMKMELAVADG--HLCNMGRMIEELEGKLRNSLDQVYFGKT 235
Query: 342 KNLVDSLR 365
+ +V +LR
Sbjct: 236 REMVCTLR 243
>sp|P13517|CAPZB_YEAST F-actin capping protein beta subunit
Length = 287
Score = 75.5 bits (184), Expect = 7e-14
Identities = 47/141 (33%), Positives = 77/141 (54%), Gaps = 9/141 (6%)
Frame = +3
Query: 18 FAGAVLIKKAGDIKSATGCWDSIHVIEVEEKGSGRNA-RYKLTSTIMLWLE-TQNSETGC 191
FAG VL KK +S WDSIHV EV S ++ Y++T+TI+L L+ T+ +
Sbjct: 140 FAGVVLFKKN---QSDHSNWDSIHVFEVTTSPSSPDSFNYRVTTTIILHLDKTKTDQNSH 196
Query: 192 FNLGGSLTRMTEKEVPLSDAN-------NHIVNIGRLVEDMENSIRKQLNDVYFGTSKNL 350
L G+LTR TEK++ + + +H+ N+G L+ED+E+ +R L VYF ++++
Sbjct: 197 MMLSGNLTRQTEKDIAIDMSRPLDVIFTSHVANLGSLIEDIESQMRNLLETVYFEKTRDI 256
Query: 351 VDSLRSGLSKSVEDQQRKLCQ 413
++ S ++ K Q
Sbjct: 257 FHQTKNAAIASSAEEANKDAQ 277
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,846,378
Number of Sequences: 369166
Number of extensions: 1254610
Number of successful extensions: 2878
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2863
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3551563800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)