Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_G02
(790 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8VEK6|ING3_MOUSE Inhibitor of growth protein 3 (p47ING3... 32 2.0
sp|Q9NXR8|ING3_HUMAN Inhibitor of growth protein 3 (p47ING3... 32 2.6
sp|P08089|M6B_STRP6 M protein, serotype 6 precursor 31 4.4
sp|Q01836|P60_LISIN Protein p60 precursor (Invasion-associa... 30 9.9
sp|Q03640|YMH2_YEAST Hypothetical 171.1 kDa protein in RPL6... 30 9.9
>sp|Q8VEK6|ING3_MOUSE Inhibitor of growth protein 3 (p47ING3 protein)
Length = 421
Score = 32.0 bits (71), Expect = 2.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +3
Query: 384 GCDNNNAVATTNNGKNAISSQKLLDSNV 467
GC NNN+ A+ NN N SSQ L N+
Sbjct: 186 GCRNNNSTASCNNAYNVNSSQPLASYNI 213
>sp|Q9NXR8|ING3_HUMAN Inhibitor of growth protein 3 (p47ING3 protein)
Length = 418
Score = 31.6 bits (70), Expect = 2.6
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +3
Query: 384 GCDNNNAVATTNNGKNAISSQKLLDSNV 467
GC NNN+ A++NN N SSQ L N+
Sbjct: 186 GCRNNNSTASSNNAYNVNSSQPLGSYNI 213
>sp|P08089|M6B_STRP6 M protein, serotype 6 precursor
Length = 483
Score = 30.8 bits (68), Expect = 4.4
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = +3
Query: 390 DNNNAVATTNNGKNAISSQKLLDSNVKVGTTTTNVSDTNGPIPMHDNEFDKKEL*NRNLT 569
D N++ NN K + L D N + T N++D N + + + N+NLT
Sbjct: 64 DVENSMLQANNDKLTTENNNLTDQNKNLTTENKNLTDQNKNLTTENKNLTDQ---NKNLT 120
Query: 570 IRNLKIFA 593
N ++ A
Sbjct: 121 TENKELKA 128
>sp|Q01836|P60_LISIN Protein p60 precursor (Invasion-associated protein)
Length = 467
Score = 29.6 bits (65), Expect = 9.9
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 393 NNNAVATTNNGKNAISSQKLLDSNVKVGT-TTTNVSDTN 506
N N TTNN NA + K ++N T T TN TN
Sbjct: 310 NTNKTNTTNNNTNASTPSKNTNTNTNTNTNTNTNQGSTN 348
>sp|Q03640|YMH2_YEAST Hypothetical 171.1 kDa protein in RPL6A-DAK1 intergenic region
Length = 1545
Score = 29.6 bits (65), Expect = 9.9
Identities = 17/33 (51%), Positives = 18/33 (54%)
Frame = +3
Query: 417 NNGKNAISSQKLLDSNVKVGTTTTNVSDTNGPI 515
NNGK IS KL D KV + NVS T PI
Sbjct: 900 NNGKEEISKLKLKDHEHKVTESIVNVSTTFIPI 932
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,038,921
Number of Sequences: 369166
Number of extensions: 1083025
Number of successful extensions: 2359
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2326
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7454154400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)