Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_F10
(286 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q94547|RGA_DROME Regulator of gene activity (Regena prot... 71 9e-13
sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subuni... 64 8e-11
sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subuni... 64 8e-11
sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subuni... 45 5e-05
sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subuni... 45 5e-05
sp|P06100|NOT2_YEAST General negative regulator of transcri... 44 9e-05
sp|Q12514|NOT5_YEAST General negative regulator of transcri... 37 0.018
sp|Q64PD6|FMT_BACFR Methionyl-tRNA formyltransferase >gi|73... 28 6.5
sp|Q58356|TRM1_METJA N(2),N(2)-dimethylguanosine tRNA methy... 28 6.5
>sp|Q94547|RGA_DROME Regulator of gene activity (Regena protein)
Length = 585
Score = 70.9 bits (172), Expect = 9e-13
Identities = 31/73 (42%), Positives = 48/73 (65%)
Frame = +2
Query: 20 RPHDMDYAVPKEYRIRHSILDKLADPLPEKLSDETLFWIFYNLTGEECQTTAAKQLMARQ 199
R D+++ VP EY I +I DKL P+ +KL ++ LF++FY G+ Q AA +L +R+
Sbjct: 458 RAQDVEFNVPPEYLINFAIRDKLTAPVLKKLQEDLLFFLFYTNIGDMMQLMAAAELHSRE 517
Query: 200 WRYNKRDKFWLTR 238
WRY+ +K W+TR
Sbjct: 518 WRYHVEEKIWITR 530
>sp|Q9NZN8|CNOT2_HUMAN CCR4-NOT transcription complex subunit 2 (CCR4-associated factor 2)
Length = 540
Score = 64.3 bits (155), Expect = 8e-11
Identities = 34/86 (39%), Positives = 51/86 (59%)
Frame = +2
Query: 20 RPHDMDYAVPKEYRIRHSILDKLADPLPEKLSDETLFWIFYNLTGEECQTTAAKQLMARQ 199
RP D+D+ VP EY I DKLA + ++ LF+++Y G+ Q AA +L R
Sbjct: 409 RPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRD 468
Query: 200 WRYNKRDKFWLTRDSKGVNEPTVHPN 277
WRY+K ++ W+TR + G+ EPT+ N
Sbjct: 469 WRYHKEERVWITR-APGM-EPTMKTN 492
>sp|Q8C5L3|CNOT2_MOUSE CCR4-NOT transcription complex subunit 2 (CCR4-associated factor 2)
Length = 540
Score = 64.3 bits (155), Expect = 8e-11
Identities = 34/86 (39%), Positives = 51/86 (59%)
Frame = +2
Query: 20 RPHDMDYAVPKEYRIRHSILDKLADPLPEKLSDETLFWIFYNLTGEECQTTAAKQLMARQ 199
RP D+D+ VP EY I DKLA + ++ LF+++Y G+ Q AA +L R
Sbjct: 409 RPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGEDLLFYLYYMNGGDVLQLLAAVELFNRD 468
Query: 200 WRYNKRDKFWLTRDSKGVNEPTVHPN 277
WRY+K ++ W+TR + G+ EPT+ N
Sbjct: 469 WRYHKEERVWITR-APGM-EPTMKTN 492
>sp|O75175|CNOT3_HUMAN CCR4-NOT transcription complex subunit 3 (CCR4-associated factor 3)
Length = 753
Score = 45.1 bits (105), Expect = 5e-05
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +2
Query: 104 EKLSDETLFWIFYNLTGEECQTTAAKQLMARQWRYNKRDKFWLTR 238
++LS ETLF+IFY L G + Q AAK L + WR++ + W R
Sbjct: 664 QRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQR 708
>sp|Q8K0V4|CNOT3_MOUSE CCR4-NOT transcription complex subunit 3 (CCR4-associated factor 3)
Length = 751
Score = 45.1 bits (105), Expect = 5e-05
Identities = 20/45 (44%), Positives = 28/45 (62%)
Frame = +2
Query: 104 EKLSDETLFWIFYNLTGEECQTTAAKQLMARQWRYNKRDKFWLTR 238
++LS ETLF+IFY L G + Q AAK L + WR++ + W R
Sbjct: 662 QRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQR 706
>sp|P06100|NOT2_YEAST General negative regulator of transcription subunit 2
Length = 191
Score = 44.3 bits (103), Expect = 9e-05
Identities = 20/42 (47%), Positives = 25/42 (59%)
Frame = +2
Query: 116 DETLFWIFYNLTGEECQTTAAKQLMARQWRYNKRDKFWLTRD 241
DETLF++FY G Q +L R WRY+K K WLT+D
Sbjct: 109 DETLFFLFYKHPGTVIQELTYLELRKRNWRYHKTLKAWLTKD 150
>sp|Q12514|NOT5_YEAST General negative regulator of transcription subunit 5
Length = 560
Score = 36.6 bits (83), Expect = 0.018
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 107 KLSDETLFWIFYNLTGEECQTTAAKQLMA-RQWRYNKRDKFWLTRD 241
K +TLF+IFY+ G Q AA++L R W +NK D+ W ++
Sbjct: 471 KFDLDTLFFIFYHYQGSYEQFLAARELFKNRNWLFNKVDRCWYYKE 516
>sp|Q64PD6|FMT_BACFR Methionyl-tRNA formyltransferase
sp|Q5L975|FMT_BACFN Methionyl-tRNA formyltransferase
Length = 324
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 14 AGRPHDMDYAVPKEYRIRHSILDKLADPL--PEKLSDE 121
AGR H + Y+ K+Y + H + PL PEKL DE
Sbjct: 42 AGRGHKIQYSPVKQYALDHQL------PLLQPEKLKDE 73
>sp|Q58356|TRM1_METJA N(2),N(2)-dimethylguanosine tRNA methyltransferase
(tRNA(guanine-26,N(2)-N(2)) methyltransferase) (tRNA
2,2-dimethylguanosine-26 methyltransferase)
(tRNA(m(2,2)G26)dimethyltransferase)
Length = 374
Score = 28.1 bits (61), Expect = 6.5
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +2
Query: 98 LPEKLSDETLFWIFYNLTGEECQTTAAKQLMARQWRYNKRDKFWL 232
+P+KL+ +FYN + C+ + + A Y+KRDKF++
Sbjct: 12 VPDKLTVTKKDEVFYNPRMKTCRDISIAVIQAFLNLYHKRDKFYI 56
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,634,662
Number of Sequences: 369166
Number of extensions: 731899
Number of successful extensions: 1666
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1665
length of database: 68,354,980
effective HSP length: 64
effective length of database: 56,531,940
effective search space used: 1695958200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)