Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_F01
(557 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09832|YAD6_SCHPO Hypothetical protein C4G8.06c in chrom... 62 1e-09
sp|Q04235|YMA5_YEAST Hypothetical 52.7 kDa protein in PDR4-... 55 9e-08
sp|Q58952|YF57_METJA Hypothetical protein MJ1557 51 2e-06
sp|P44524|Y116_HAEIN Hypothetical UPF0020/UPF0064 protein H... 34 0.28
sp|Q8R6G7|PRMA_FUSNN Ribosomal protein L11 methyltransferas... 33 0.62
sp|Q59047|YG53_METJA Hypothetical UPF0064 protein MJ1653 31 2.4
sp|Q59043|YG49_METJA Hypothetical UPF0064 protein MJ1649 31 2.4
sp|Q6DBY9|CHST1_BRARE Carbohydrate sulfotransferase 1 (Kera... 30 3.1
sp|Q81ZD6|Y333_BACAN Hypothetical RNA methyltransferase BA0... 30 4.0
sp|Q01056|TEGU_SHV21 Probable large tegument protein 30 4.0
>sp|Q09832|YAD6_SCHPO Hypothetical protein C4G8.06c in chromosome I
Length = 418
Score = 61.6 bits (148), Expect = 1e-09
Identities = 53/194 (27%), Positives = 82/194 (42%), Gaps = 20/194 (10%)
Frame = +1
Query: 1 MFAGIGYFSLTYLLHCKAKFLYGCDLNSNSVKWLKNNLISN--------NIEENRYKILE 156
++AGIGYF+ +Y+ A ++ ++N SV+ L+ + N N E +K+
Sbjct: 252 LYAGIGYFTFSYV-KAGASTVFCWEINPWSVEALRRAALKNGWSIYVVRNGENYEFKVGT 310
Query: 157 GDCAVVAPRNV------------AQRINLGLIPDCREYWQTACEVLCKETGGVMHIHENV 300
V NV A+ INLG++P + W TA +L +E+ +H+HENV
Sbjct: 311 HRIVVFLESNVYAAERFSKMNISARHINLGMLPSSEKSWSTATSILKRESHSFIHVHENV 370
Query: 301 NSMNDFDNERIENLEYSCNKCVKVAWNTFAMEAKKTIKEMLNKLHPDVDWSVKCTHLEHV 480
+E IE N C M AK T+ C V
Sbjct: 371 K------DEDIETYSSEVNSCFS------KMLAKNTV----------------CV-TNCV 401
Query: 481 KSYAPHVDHMVLDL 522
KS++P V H+V D+
Sbjct: 402 KSFSPRVSHIVYDI 415
>sp|Q04235|YMA5_YEAST Hypothetical 52.7 kDa protein in PDR4-GLO1 intergenic region
Length = 462
Score = 55.5 bits (132), Expect = 9e-08
Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 25/199 (12%)
Frame = +1
Query: 1 MFAGIGYFSLTYLLHCKAKFLYGCDLNSNSVKWLKNNLISNNIEENRYKILEGDCAVVAP 180
++AGIGYF+ +YL A+ L+ +LN SV+ LK L +N ++ G+C V
Sbjct: 282 LYAGIGYFTFSYLTK-GARTLFAFELNPWSVEGLKRGLKANGFNKS------GNCHVFQE 334
Query: 181 RNV-------------------AQRINLGLIPDCREYWQTACEVLCKETGGV----MHIH 291
N + INLGL+P ++ W A +++ + + MHIH
Sbjct: 335 SNEMCVQRLTEFLSQNPGFRLRIRHINLGLLPSSKQGWPLAIKLIYLQGASLEKVTMHIH 394
Query: 292 ENVNSMNDFDNERIENLEYSCNKCVKV-AWN-TFAMEAKKTIKEMLNKLHPDVDWSVKCT 465
ENV+ + IE+ + N V++ A N + A+ + IK + +
Sbjct: 395 ENVHI------DAIEDGSFEKNVIVELDAINESIALIRNRGIKLQFVR-----------S 437
Query: 466 HLEHVKSYAPHVDHMVLDL 522
LE +K++AP + H+ +D+
Sbjct: 438 KLERIKTFAPDIWHVCVDV 456
>sp|Q58952|YF57_METJA Hypothetical protein MJ1557
Length = 249
Score = 51.2 bits (121), Expect = 2e-06
Identities = 45/173 (26%), Positives = 76/173 (43%)
Frame = +1
Query: 1 MFAGIGYFSLTYLLHCKAKFLYGCDLNSNSVKWLKNNLISNNIEENRYKILEGDCAVVAP 180
MFAGIGYF++ + K K +Y + N + +L N+ N + N + D V
Sbjct: 103 MFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL--NNVIPILADNRDVEL 160
Query: 181 RNVAQRINLGLIPDCREYWQTACEVLCKETGGVMHIHENVNSMNDFDNERIENLEYSCNK 360
++VA R+ +G + ++ E L + GV+H HE V ++ IE L++ K
Sbjct: 161 KDVADRVIMGYVHKTHKFLDKTFEFL--KDRGVIHYHETVAEKIMYERP-IERLKFYAEK 217
Query: 361 CVKVAWNTFAMEAKKTIKEMLNKLHPDVDWSVKCTHLEHVKSYAPHVDHMVLD 519
N + + +D+ V+ +K YAP V H+V+D
Sbjct: 218 ------NGYKL----------------IDYEVR-----KIKKYAPGVWHVVVD 243
>sp|P44524|Y116_HAEIN Hypothetical UPF0020/UPF0064 protein HI0116
Length = 711
Score = 33.9 bits (76), Expect = 0.28
Identities = 13/38 (34%), Positives = 24/38 (63%)
Frame = +1
Query: 52 AKFLYGCDLNSNSVKWLKNNLISNNIEENRYKILEGDC 165
AK D+++ + W + NLI N+IE ++K+++ DC
Sbjct: 570 AKSTTTVDMSNTYLNWAEQNLILNDIEGKQHKLIQADC 607
>sp|Q8R6G7|PRMA_FUSNN Ribosomal protein L11 methyltransferase (L11 Mtase)
Length = 312
Score = 32.7 bits (73), Expect = 0.62
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +1
Query: 61 LYGCDLNSNSVKWLKNNLISNNIEENRYKILEGD 162
+YG D++ S++ K NLI NNI N K+L+G+
Sbjct: 199 VYGTDIDEFSMEVAKENLILNNISLNDVKLLKGN 232
>sp|Q59047|YG53_METJA Hypothetical UPF0064 protein MJ1653
Length = 385
Score = 30.8 bits (68), Expect = 2.4
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 67 GCDLNSNSVKWLKNNLISNNIEENRYKILEGD 162
G DL+ ++K + N+ NNI ++RY+ +EG+
Sbjct: 239 GVDLSKKALKLAEENMELNNIPKDRYEFIEGN 270
>sp|Q59043|YG49_METJA Hypothetical UPF0064 protein MJ1649
Length = 387
Score = 30.8 bits (68), Expect = 2.4
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 67 GCDLNSNSVKWLKNNLISNNIEENRYKILEGD 162
G DL+ ++K + N+ NNI ++RY+ +EG+
Sbjct: 240 GVDLSKKALKLAEENIELNNIPKDRYEFIEGN 271
>sp|Q6DBY9|CHST1_BRARE Carbohydrate sulfotransferase 1 (Keratan sulfate Gal-6
sulfotransferase) (KSST) (KSGal6ST) (KS6ST)
Length = 420
Score = 30.4 bits (67), Expect = 3.1
Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Frame = +1
Query: 49 KAKFLY---GCDLNSNSVKWLKNNLISNN--IEENRYKILEGDCAVVAPRNVAQRINLGL 213
K K +Y G L + V W+ NN NN +++Y L A A+ L
Sbjct: 320 KTKEVYEFLGLSLEKSVVDWIHNNTRGNNDVSAKHKYGTLRDSAA------NAESWRSKL 373
Query: 214 IPDCREYWQTACEVLCKETGGVMHIHENVNSMNDFDNERIENLE 345
D +Y QT C+ + E G ++ VNS + N I +E
Sbjct: 374 SHDIVDYTQTVCQHILDELG-----YKAVNSPEELKNMSISLIE 412
>sp|Q81ZD6|Y333_BACAN Hypothetical RNA methyltransferase BA0333/GBAA0333/BAS0318
Length = 458
Score = 30.0 bits (66), Expect = 4.0
Identities = 19/60 (31%), Positives = 31/60 (51%)
Frame = +1
Query: 4 FAGIGYFSLTYLLHCKAKFLYGCDLNSNSVKWLKNNLISNNIEENRYKILEGDCAVVAPR 183
+ GIG SL L KAK +YG ++ +++ K N NN+ + + G+ VV P+
Sbjct: 319 YCGIGSISL--FLAQKAKKVYGVEIVPEAIEDAKRNAALNNMTNAEFGV--GEAEVVIPK 374
>sp|Q01056|TEGU_SHV21 Probable large tegument protein
Length = 2469
Score = 30.0 bits (66), Expect = 4.0
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Frame = -2
Query: 556 KAKKF---IQTAHKT-NPKPYDRHEGHKISRVPNACISHSNQHQD 434
K KKF + T HKT N ++ + K+ PN CI HS+ H+D
Sbjct: 2190 KTKKFLSPVHTKHKTSNSIIFEENTTVKVQ--PNTCIQHSDLHKD 2232
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,280,470
Number of Sequences: 369166
Number of extensions: 1381041
Number of successful extensions: 5067
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5060
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3980545740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)