Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_E22
(557 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P08121|CO3A1_MOUSE Collagen alpha 1(III) chain precursor 85 1e-16
sp|P13941|CO3A1_RAT Collagen alpha 1(III) chain precursor 84 2e-16
sp|P02461|CO3A1_HUMAN Collagen alpha 1(III) chain precursor 83 5e-16
sp||P02459_2 [Segment 2 of 2] Collagen alpha 1(II) chain pr... 81 2e-15
sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor 79 6e-15
sp|P02458|CO2A1_HUMAN Collagen alpha 1(II) chain precursor ... 79 1e-14
sp|Q9XSJ7|CO1A1_CANFA Collagen alpha 1(I) chain precursor 79 1e-14
sp|P02452|CO1A1_HUMAN Collagen alpha 1(I) chain precursor 79 1e-14
sp|P02460|CA12_CHICK Collagen alpha 1(II) chain precursor 79 1e-14
sp|P28481|CO2A1_MOUSE Collagen alpha 1(II) chain precursor ... 78 2e-14
>sp|P08121|CO3A1_MOUSE Collagen alpha 1(III) chain precursor
Length = 1464
Score = 84.7 bits (208), Expect = 1e-16
Identities = 60/150 (40%), Positives = 80/150 (53%), Gaps = 16/150 (10%)
Frame = +3
Query: 42 WIDEASEDQS-WFGEA-TGIFKFDY-------QIESSQLIFLKLLSSHAKQKLIIHCKN- 191
W D +E + WFGE+ G F+F Y + QL FL+LLSS A Q + HCKN
Sbjct: 1314 WTDSGAEKKHVWFGESMNGGFQFSYGPPDLPEDVVDVQLAFLRLLSSRASQNITYHCKNS 1373
Query: 192 LAVVE----NSPKPLILYSDHDEEVMKDGDL-FRYKVLQDGCKNSEGIVSLTELEMDT-E 353
+A ++ N K L L ++ E +G+ F Y VL+DGC G S T E T +
Sbjct: 1374 IAYMDQASGNVKKSLKLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWSKTVFEYQTRK 1433
Query: 354 AHRLPIRDVALHMGRSKKQQFGLDIGQVCF 443
A RLPI D+A + Q+FG+DIG VCF
Sbjct: 1434 AMRLPIIDIAPYDIGGPDQEFGVDIGPVCF 1463
>sp|P13941|CO3A1_RAT Collagen alpha 1(III) chain precursor
Length = 636
Score = 84.0 bits (206), Expect = 2e-16
Identities = 60/150 (40%), Positives = 80/150 (53%), Gaps = 16/150 (10%)
Frame = +3
Query: 42 WIDEASEDQS-WFGEA-TGIFKFDY-------QIESSQLIFLKLLSSHAKQKLIIHCKN- 191
W D +E + WFGE+ G F+F Y + QL FL+LLSS A Q + HCKN
Sbjct: 486 WTDAGAEKKHVWFGESMNGGFQFSYGNPDLPEDVLDVQLAFLRLLSSRASQNITYHCKNS 545
Query: 192 LAVVE----NSPKPLILYSDHDEEVMKDGDL-FRYKVLQDGCKNSEGIVSLTELEMDT-E 353
+A ++ N K L L ++ E +G+ F Y VL+DGC G S T E T +
Sbjct: 546 IAYMDQANGNVKKSLKLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWSKTVFEYQTRK 605
Query: 354 AHRLPIRDVALHMGRSKKQQFGLDIGQVCF 443
A RLPI D+A + Q+FG+DIG VCF
Sbjct: 606 AMRLPIIDIAPYDIGGPDQEFGVDIGPVCF 635
>sp|P02461|CO3A1_HUMAN Collagen alpha 1(III) chain precursor
Length = 1466
Score = 82.8 bits (203), Expect = 5e-16
Identities = 59/150 (39%), Positives = 81/150 (54%), Gaps = 16/150 (10%)
Frame = +3
Query: 42 WIDEASEDQS-WFGEAT-GIFKFDY-------QIESSQLIFLKLLSSHAKQKLIIHCKN- 191
W D ++E + WFGE+ G F+F Y + QL FL+LLSS A Q + HCKN
Sbjct: 1316 WTDSSAEKKHVWFGESMDGGFQFSYGNPELPEDVLDVQLAFLRLLSSRASQNITYHCKNS 1375
Query: 192 LAVVE----NSPKPLILYSDHDEEVMKDGD-LFRYKVLQDGCKNSEGIVSLTELEMDT-E 353
+A ++ N K L L ++ E +G+ F Y VL+DGC G S T E T +
Sbjct: 1376 IAYMDQASGNVKKALKLMGSNEGEFKAEGNSKFTYTVLEDGCTKHTGEWSKTVFEYRTRK 1435
Query: 354 AHRLPIRDVALHMGRSKKQQFGLDIGQVCF 443
A RLPI D+A + Q+FG+D+G VCF
Sbjct: 1436 AVRLPIVDIAPYDIGGPDQEFGVDVGPVCF 1465
>sp||P02459_2 [Segment 2 of 2] Collagen alpha 1(II) chain precursor
Length = 181
Score = 81.3 bits (199), Expect = 2e-15
Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 17/153 (11%)
Frame = +3
Query: 36 KNWIDEASEDQS--WFGEA-TGIFKFDYQIESS-------QLIFLKLLSSHAKQKLIIHC 185
KNW S+D+ WFGE G F F Y ++ Q+ FL+LLS+ Q + HC
Sbjct: 28 KNWWSSKSKDKKHIWFGETINGGFHFSYGDDNLAPNTADVQMTFLRLLSTEGSQNITYHC 87
Query: 186 KN-LAVVE----NSPKPLILYSDHDEEVMKDGDL-FRYKVLQDGCKNSEGIVSLTELEMD 347
KN +A ++ N K L++ +D E+ +G+ F Y VL+DGC G T +E
Sbjct: 88 KNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTVLKDGCTKHTGKWGKTMIEYR 147
Query: 348 TE-AHRLPIRDVALHMGRSKKQQFGLDIGQVCF 443
++ RLPI D+A +Q+FG+DIG VCF
Sbjct: 148 SQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 180
>sp|O93484|CO1A2_ONCMY Collagen alpha 2(I) chain precursor
Length = 1356
Score = 79.3 bits (194), Expect = 6e-15
Identities = 60/154 (38%), Positives = 88/154 (57%), Gaps = 18/154 (11%)
Frame = +3
Query: 36 KNWIDEASEDQS--WFGEA-TGIFKFDYQIES-------SQLIFLKLLSSHAKQKLIIHC 185
KNW +SE++ WFGE G +F Y E+ +QL F++LL++ A Q + HC
Sbjct: 1204 KNWY-RSSENKKHVWFGETINGGTEFAYNDETLSPQSMATQLAFMRLLANQATQNITYHC 1262
Query: 186 KN-LAVVE----NSPKPLILYSDHDEEVMKDGDL-FRYKVLQDGCKNSEGIVSLTELEMD 347
KN +A ++ N K ++L +D E+ +G+ F + VL+DGC G S T +E
Sbjct: 1263 KNSVAYMDGENGNLKKAVLLQGSNDVELRAEGNSRFTFNVLEDGCTRHTGQWSKTVIEYR 1322
Query: 348 T-EAHRLPIRDVA-LHMGRSKKQQFGLDIGQVCF 443
T + RLPI D+A L +G + Q+FGLDIG VCF
Sbjct: 1323 TNKPSRLPILDIAPLDIGEAD-QEFGLDIGPVCF 1355
>sp|P02458|CO2A1_HUMAN Collagen alpha 1(II) chain precursor [Contains: Chondrocalcin]
Length = 1418
Score = 78.6 bits (192), Expect = 1e-14
Identities = 54/153 (35%), Positives = 79/153 (51%), Gaps = 17/153 (11%)
Frame = +3
Query: 36 KNWIDEASEDQS--WFGEA-TGIFKFDY-------QIESSQLIFLKLLSSHAKQKLIIHC 185
KNW S+++ WFGE G F F Y + Q+ FL+LLS+ Q + HC
Sbjct: 1265 KNWWSSKSKEKKHIWFGETINGGFHFSYGDDNLAPNTANVQMTFLRLLSTEGSQNITYHC 1324
Query: 186 KN-LAVVE----NSPKPLILYSDHDEEVMKDGDL-FRYKVLQDGCKNSEGIVSLTELEMD 347
KN +A ++ N K L++ +D E+ +G+ F Y L+DGC G T +E
Sbjct: 1325 KNSIAYLDEAAGNLKKALLIQGSNDVEIRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYR 1384
Query: 348 TE-AHRLPIRDVALHMGRSKKQQFGLDIGQVCF 443
++ RLPI D+A +Q+FG+DIG VCF
Sbjct: 1385 SQKTSRLPIIDIAPMDIGGPEQEFGVDIGPVCF 1417
>sp|Q9XSJ7|CO1A1_CANFA Collagen alpha 1(I) chain precursor
Length = 1460
Score = 78.6 bits (192), Expect = 1e-14
Identities = 55/154 (35%), Positives = 78/154 (50%), Gaps = 18/154 (11%)
Frame = +3
Query: 36 KNWIDEASEDQS---WFGEA-TGIFKFDYQIESS-------QLIFLKLLSSHAKQKLIIH 182
KNW + + W+GE+ T F+F+Y + S QL FL+L+S+ A Q + H
Sbjct: 1306 KNWYISKNPKEKRHVWYGESMTDGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYH 1365
Query: 183 CKNLAV-----VENSPKPLILYSDHDEEVMKDGDL-FRYKVLQDGCKNSEGIVSLTELEM 344
CKN N K L+L ++ E+ +G+ F Y V DGC + G T +E
Sbjct: 1366 CKNSVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYSVTYDGCTSHTGAWGKTVIEY 1425
Query: 345 DT-EAHRLPIRDVALHMGRSKKQQFGLDIGQVCF 443
T + RLPI DVA + Q+FG+DIG VCF
Sbjct: 1426 KTTKTSRLPIIDVAPLDVGAPDQEFGMDIGPVCF 1459
>sp|P02452|CO1A1_HUMAN Collagen alpha 1(I) chain precursor
Length = 1464
Score = 78.6 bits (192), Expect = 1e-14
Identities = 57/154 (37%), Positives = 80/154 (51%), Gaps = 18/154 (11%)
Frame = +3
Query: 36 KNW-IDEASEDQS--WFGEA-TGIFKFDYQIESS-------QLIFLKLLSSHAKQKLIIH 182
KNW I + +D+ WFGE+ T F+F+Y + S QL FL+L+S+ A Q + H
Sbjct: 1310 KNWYISKNPKDKRHVWFGESMTDGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYH 1369
Query: 183 CKNLAV-----VENSPKPLILYSDHDEEVMKDGDL-FRYKVLQDGCKNSEGIVSLTELEM 344
CKN N K L+L ++ E+ +G+ F Y V DGC + G T +E
Sbjct: 1370 CKNSVAYMDQQTGNLKKALLLKGSNEIEIRAEGNSRFTYSVTVDGCTSHTGAWGKTVIEY 1429
Query: 345 DT-EAHRLPIRDVALHMGRSKKQQFGLDIGQVCF 443
T + RLPI DVA + Q+FG D+G VCF
Sbjct: 1430 KTTKTSRLPIIDVAPLDVGAPDQEFGFDVGPVCF 1463
>sp|P02460|CA12_CHICK Collagen alpha 1(II) chain precursor
Length = 369
Score = 78.6 bits (192), Expect = 1e-14
Identities = 55/153 (35%), Positives = 79/153 (51%), Gaps = 17/153 (11%)
Frame = +3
Query: 36 KNWIDEASEDQS--WFGEA-TGIFKFDYQIE-------SSQLIFLKLLSSHAKQKLIIHC 185
KNW ++D+ WF E G F F Y E S Q+ FL+LLS+ Q + HC
Sbjct: 216 KNWWTSKTKDKKHVWFAETINGGFHFSYGDENLSPNTASIQMTFLRLLSTEGSQNVTYHC 275
Query: 186 KN-LAVVE----NSPKPLILYSDHDEEVMKDGD-LFRYKVLQDGCKNSEGIVSLTELEMD 347
KN +A ++ N K +++ +D E+ +G+ F Y VL+DGC G T +E
Sbjct: 276 KNSIAYMDEETGNLKKAILIQGSNDVEIRAEGNSRFTYSVLEDGCTKHTGKWGKTVIEYR 335
Query: 348 TE-AHRLPIRDVALHMGRSKKQQFGLDIGQVCF 443
++ RLPI D+A Q+FG+DIG VCF
Sbjct: 336 SQKTSRLPIVDIAPMDIGGADQEFGVDIGPVCF 368
>sp|P28481|CO2A1_MOUSE Collagen alpha 1(II) chain precursor [Contains: Chondrocalcin]
Length = 1459
Score = 77.8 bits (190), Expect = 2e-14
Identities = 54/153 (35%), Positives = 79/153 (51%), Gaps = 17/153 (11%)
Frame = +3
Query: 36 KNWIDEASEDQS--WFGEA-TGIFKFDY-------QIESSQLIFLKLLSSHAKQKLIIHC 185
KNW S+++ WFGE G F F Y + Q+ FL+LLS+ Q + HC
Sbjct: 1306 KNWWSSKSKEKKHIWFGETMNGGFHFSYGDGNLAPNTANVQMTFLRLLSTEGSQNITYHC 1365
Query: 186 KN-LAVVE----NSPKPLILYSDHDEEVMKDGDL-FRYKVLQDGCKNSEGIVSLTELEMD 347
KN +A ++ N K L++ +D E+ +G+ F Y L+DGC G T +E
Sbjct: 1366 KNSIAYLDEAAGNLKKALLIQGSNDVEMRAEGNSRFTYTALKDGCTKHTGKWGKTVIEYR 1425
Query: 348 TE-AHRLPIRDVALHMGRSKKQQFGLDIGQVCF 443
++ RLPI D+A +Q+FG+DIG VCF
Sbjct: 1426 SQKTSRLPIIDIAPMDIGGAEQEFGVDIGPVCF 1458
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,790,007
Number of Sequences: 369166
Number of extensions: 1112208
Number of successful extensions: 2342
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2302
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3980545740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)