Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_E21
(845 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 (ODC 2) (xO... 156 8e-38
sp|P00860|DCOR_MOUSE Ornithine decarboxylase (ODC) 149 9e-36
sp|P14019|DCOR_CRIGR Ornithine decarboxylase (ODC) 148 2e-35
sp|P11926|DCOR_HUMAN Ornithine decarboxylase (ODC) 147 3e-35
sp|P27119|DCOR_MUSPA Ornithine decarboxylase (ODC) 147 3e-35
sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 (ODC 1) (xO... 147 3e-35
sp|P09057|DCOR_RAT Ornithine decarboxylase (ODC) 145 1e-34
sp|P41931|DCOR_CAEEL Ornithine decarboxylase (ODC) 141 2e-33
sp|P27118|DCOR_CHICK Ornithine decarboxylase (ODC) 141 3e-33
sp|P27117|DCOR_BOVIN Ornithine decarboxylase (ODC) 140 3e-33
>sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 (ODC 2) (xODC2)
Length = 456
Score = 156 bits (394), Expect = 8e-38
Identities = 91/257 (35%), Positives = 129/257 (50%)
Frame = +3
Query: 27 VMELARKIGFKPTILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKI 206
V E+A + G+K +LDIGGGFPG +++FEE+ +N LD YFPE + +I
Sbjct: 217 VFEMASEFGYKMWLLDIGGGFPGTED------SKIRFEEIAGVINPALDMYFPESSDVQI 270
Query: 207 IAEPGRYFVHGAYTLVTQVIGVHSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAE 386
IAEPGRY+V A++L VI ++
Sbjct: 271 IAEPGRYYVASAFSLAVNVIAKKEVE---------------------------------- 296
Query: 387 YLMDSMSDISEFSNAELRKPDKHQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPF 566
S+SD E ++ K Y +NDGVY SFNC+VFDHA P P
Sbjct: 297 ---HSVSDDEENESS-----------------KSIMYYVNDGVYGSFNCLVFDHAHPKPI 336
Query: 567 GIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIA 746
K+ + + + S+++GPTCDG D + ++ LP++ VG+W+++ NMGAYTIA
Sbjct: 337 -------LHKKPSPDQPLYTSSLWGPTCDGLDQIAERVQLPELHVGDWLLFENMGAYTIA 389
Query: 747 ASSCFNGIPMADVHYFM 797
ASS FNG + VHY M
Sbjct: 390 ASSNFNGFQQSPVHYAM 406
>sp|P00860|DCOR_MOUSE Ornithine decarboxylase (ODC)
Length = 461
Score = 149 bits (376), Expect = 9e-36
Identities = 88/257 (34%), Positives = 129/257 (50%)
Frame = +3
Query: 27 VMELARKIGFKPTILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKI 206
V ++A ++GF +LDIGGGFPG +LKFEE+ +N LD YFP ++G +I
Sbjct: 218 VFDMATEVGFSMHLLDIGGGFPGSEDT------KLKFEEITSVINPALDKYFPSDSGVRI 271
Query: 207 IAEPGRYFVHGAYTLVTQVIGVHSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAE 386
IAEPGRY+V A+TL +I ++ P
Sbjct: 272 IAEPGRYYVASAFTLAVNIIAKKTVWKEQP------------------------------ 301
Query: 387 YLMDSMSDISEFSNAELRKPDKHQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPF 566
SD + SN E+ + Y +NDGVY SFNCI++DHA
Sbjct: 302 -----GSDDEDESN-----------------EQTFMYYVNDGVYGSFNCILYDHAHVKAL 339
Query: 567 GIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIA 746
K + + + S+I+GPTCDG D ++++ LP+M VG+W+++ NMGAYT+A
Sbjct: 340 -------LQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVA 392
Query: 747 ASSCFNGIPMADVHYFM 797
A+S FNG +++Y M
Sbjct: 393 AASTFNGFQRPNIYYVM 409
>sp|P14019|DCOR_CRIGR Ornithine decarboxylase (ODC)
Length = 455
Score = 148 bits (374), Expect = 2e-35
Identities = 86/257 (33%), Positives = 129/257 (50%)
Frame = +3
Query: 27 VMELARKIGFKPTILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKI 206
V ++ ++GF +LDIGGGFPG +LKFEE+ +N LD YFP ++G ++
Sbjct: 215 VFDMGTEVGFSMYLLDIGGGFPGSEDT------KLKFEEITSVINPALDKYFPPDSGVRV 268
Query: 207 IAEPGRYFVHGAYTLVTQVIGVHSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAE 386
IAEPGRY+V A+TL +I A+
Sbjct: 269 IAEPGRYYVASAFTLAVNII--------------------------------------AK 290
Query: 387 YLMDSMSDISEFSNAELRKPDKHQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPF 566
++ SD + S+ E+ + Y +NDGVY SFNCI++DHA P
Sbjct: 291 KIVSKGSDDEDESS-----------------EQTFMYYVNDGVYGSFNCILYDHAHVKPL 333
Query: 567 GIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIA 746
K + + + S+I+GPTCDG D ++++ LP+M VG+W+++ NMGAYT+A
Sbjct: 334 -------LPKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVA 386
Query: 747 ASSCFNGIPMADVHYFM 797
A+S FNG ++Y M
Sbjct: 387 AASTFNGFQRPSIYYVM 403
>sp|P11926|DCOR_HUMAN Ornithine decarboxylase (ODC)
Length = 461
Score = 147 bits (372), Expect = 3e-35
Identities = 87/257 (33%), Positives = 126/257 (49%)
Frame = +3
Query: 27 VMELARKIGFKPTILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKI 206
V ++ ++GF +LDIGGGFPG V +LKFEE+ +N LD YFP ++G +I
Sbjct: 218 VFDMGAEVGFSMYLLDIGGGFPGSEDV------KLKFEEITGVINPALDKYFPSDSGVRI 271
Query: 207 IAEPGRYFVHGAYTLVTQVIGVHSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAE 386
IAEPGRY+V A+TL NI K + + + S
Sbjct: 272 IAEPGRYYVASAFTLAV------------------NIIAKKIVLKEQTGSDDEDESS--- 310
Query: 387 YLMDSMSDISEFSNAELRKPDKHQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPF 566
E+ + Y +NDGVY SFNCI++DHA P
Sbjct: 311 -------------------------------EQTFMYYVNDGVYGSFNCILYDHAHVKPL 339
Query: 567 GIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIA 746
K + + + S+I+GPTCDG D ++++ LP+M VG+W+++ NMGAYT+A
Sbjct: 340 -------LQKRPKPDEKYYSSSIWGPTCDGLDRIVERCDLPEMHVGDWMLFENMGAYTVA 392
Query: 747 ASSCFNGIPMADVHYFM 797
A+S FNG ++Y M
Sbjct: 393 AASTFNGFQRPTIYYVM 409
>sp|P27119|DCOR_MUSPA Ornithine decarboxylase (ODC)
Length = 461
Score = 147 bits (372), Expect = 3e-35
Identities = 87/257 (33%), Positives = 128/257 (49%)
Frame = +3
Query: 27 VMELARKIGFKPTILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKI 206
V ++ ++GF +LDIGGGFPG +LKFEE+ +N LD YFP ++G +I
Sbjct: 218 VFDMGTEVGFSMYLLDIGGGFPGSEDT------KLKFEEITSVINPALDKYFPSDSGVRI 271
Query: 207 IAEPGRYFVHGAYTLVTQVIGVHSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAE 386
IAEPGRY+V A+TL +I ++ P
Sbjct: 272 IAEPGRYYVASAFTLAVNIIAKKTVWKEQP------------------------------ 301
Query: 387 YLMDSMSDISEFSNAELRKPDKHQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPF 566
SD + SN E+ + Y +NDGVY SFNCI++DHA
Sbjct: 302 -----GSDDEDESN-----------------EQTFMYYVNDGVYGSFNCILYDHAHVKAL 339
Query: 567 GIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIA 746
K + + + S+I+GPTCDG D ++++ LP+M VG+W+++ NMGAYT+A
Sbjct: 340 -------LQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVA 392
Query: 747 ASSCFNGIPMADVHYFM 797
A+S FNG +++Y M
Sbjct: 393 AASTFNGFQRPNIYYVM 409
>sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 (ODC 1) (xODC1)
Length = 460
Score = 147 bits (372), Expect = 3e-35
Identities = 88/257 (34%), Positives = 133/257 (51%)
Frame = +3
Query: 27 VMELARKIGFKPTILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKI 206
V ++ ++GF +LDIGGGFPG V +LKFEE+ +N LD YFP ++G KI
Sbjct: 218 VFDMGAELGFNMHLLDIGGGFPGSEDV------KLKFEEITSVINPALDKYFPADSGVKI 271
Query: 207 IAEPGRYFVHGAYTLVTQVIGVHSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAE 386
IAEPGRY+V ++TL + IA+
Sbjct: 272 IAEPGRYYVASSFTLAVNI--------------------------------------IAK 293
Query: 387 YLMDSMSDISEFSNAELRKPDKHQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPF 566
+M ++E S ++ + + +K Y +NDGVY SFNCI+FDHA P
Sbjct: 294 KVM-----VNEQSGSDDEEDAAN--------DKTLMYYVNDGVYGSFNCILFDHAHVKPV 340
Query: 567 GIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIA 746
K+ + + + S+I+GPTCDG D ++++ LP++ VG+W+++ NMGAYT+A
Sbjct: 341 -------LTKKPKPDEKFYSSSIWGPTCDGLDRIVERFELPELQVGDWMLFENMGAYTVA 393
Query: 747 ASSCFNGIPMADVHYFM 797
A+S FNG ++Y M
Sbjct: 394 AASTFNGFQRPTLYYVM 410
>sp|P09057|DCOR_RAT Ornithine decarboxylase (ODC)
Length = 461
Score = 145 bits (367), Expect = 1e-34
Identities = 86/257 (33%), Positives = 128/257 (49%)
Frame = +3
Query: 27 VMELARKIGFKPTILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKI 206
V ++ ++GF +LDIGGGFPG +LKFEE+ +N LD YFP ++G +I
Sbjct: 218 VFDMGTEVGFSMYLLDIGGGFPGSEDT------KLKFEEITSVINPALDKYFPSDSGVRI 271
Query: 207 IAEPGRYFVHGAYTLVTQVIGVHSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAE 386
IAEPGRY+V A+TL +I ++
Sbjct: 272 IAEPGRYYVASAFTLAVNIIAKKTV----------------------------------- 296
Query: 387 YLMDSMSDISEFSNAELRKPDKHQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPF 566
+ + SD + SN E+ Y +NDGVY SFNCI++DHA
Sbjct: 297 WKEQTGSDDEDESN-----------------EQTLMYYVNDGVYGSFNCILYDHAHVKAL 339
Query: 567 GIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIA 746
K + + + S+I+GPTCDG D ++++ LP+M VG+W+++ NMGAYT+A
Sbjct: 340 -------LQKRPKPDEKYYSSSIWGPTCDGLDRIVERCSLPEMHVGDWMLFENMGAYTVA 392
Query: 747 ASSCFNGIPMADVHYFM 797
A+S FNG +++Y M
Sbjct: 393 AASTFNGFQRPNIYYVM 409
>sp|P41931|DCOR_CAEEL Ornithine decarboxylase (ODC)
Length = 422
Score = 141 bits (356), Expect = 2e-33
Identities = 85/264 (32%), Positives = 127/264 (48%)
Frame = +3
Query: 15 YCSQVMELARKIGFKPTILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEEN 194
+ + E+ +GFK I+D+GGGFPG N FE++ + LD +FP+ N
Sbjct: 217 HAKNLCEIGEGLGFKMDIIDMGGGFPGAEHHN-------PFEKIAETIRDALDEFFPDTN 269
Query: 195 GYKIIAEPGRYFVHGAYTLVTQVIGVHSLDLSNPIANINNIACHKSNYETYDSIETSSQG 374
++IAEPGR+F G ++LV + +H+
Sbjct: 270 K-RLIAEPGRFFAAGPFSLVANI--IHA-------------------------------- 294
Query: 375 SIAEYLMDSMSDISEFSNAELRKPDKHQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAK 554
+E +++ K K + GY Y INDGVY SFNCI+FDHA
Sbjct: 295 -------------TEVPASKITKDPKD------CADHGYMYYINDGVYGSFNCILFDHAH 335
Query: 555 PAPFGIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGA 734
P +FD + E F+STI+GPTCD D + ++ +PKM+VG W+ +P+MGA
Sbjct: 336 PIGSPLFDTD--------RNEKFMSTIWGPTCDSLDLVEDKKLMPKMNVGEWLYYPDMGA 387
Query: 735 YTIAASSCFNGIPMADVHYFMYQD 806
YT+AA++ FNG Y M ++
Sbjct: 388 YTLAAATTFNGFSKPVPMYVMSEE 411
>sp|P27118|DCOR_CHICK Ornithine decarboxylase (ODC)
Length = 450
Score = 141 bits (355), Expect = 3e-33
Identities = 88/257 (34%), Positives = 124/257 (48%)
Frame = +3
Query: 27 VMELARKIGFKPTILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKI 206
V ++ ++GF +LDIGGGFPG V +LKFEE+ +N LD YFP ++ I
Sbjct: 208 VFDMGAELGFNMYLLDIGGGFPGSEDV------KLKFEEITSVINPALDKYFPLDSEVTI 261
Query: 207 IAEPGRYFVHGAYTLVTQVIGVHSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAE 386
IAEPGRY+V A+TL NI K + GS
Sbjct: 262 IAEPGRYYVASAFTLAV------------------NIIAKKI-------VSKEQTGS--- 293
Query: 387 YLMDSMSDISEFSNAELRKPDKHQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPF 566
D D+++ K Y +NDGVY SFNCI++DHA P
Sbjct: 294 ---DDEDDVND---------------------KTLMYYVNDGVYGSFNCILYDHAHVKPV 329
Query: 567 GIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIA 746
K + + +I+GPTCDG D ++++ +P++ VG+WI++ NMGAYT+A
Sbjct: 330 -------LQKRPKPDDGCYSCSIWGPTCDGLDRIVERCNMPELQVGDWILFENMGAYTVA 382
Query: 747 ASSCFNGIPMADVHYFM 797
A+S FNG +HY M
Sbjct: 383 AASTFNGFQRPTIHYVM 399
>sp|P27117|DCOR_BOVIN Ornithine decarboxylase (ODC)
Length = 461
Score = 140 bits (354), Expect = 3e-33
Identities = 87/257 (33%), Positives = 125/257 (48%)
Frame = +3
Query: 27 VMELARKIGFKPTILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEENGYKI 206
V ++ ++GF +LDIGGGFPG V +LKFEE+ +N LD YFP ++G +I
Sbjct: 218 VFDMGAEVGFNMYLLDIGGGFPGSEDV------KLKFEEITSVINPALDKYFPSDSGVRI 271
Query: 207 IAEPGRYFVHGAYTLVTQVIGVHSLDLSNPIANINNIACHKSNYETYDSIETSSQGSIAE 386
IAEPGRY+V A+TL +I L L + D E S+ +
Sbjct: 272 IAEPGRYYVASAFTLAVNII-AKKLVLKEQTGS--------------DDEEESTDRTFMY 316
Query: 387 YLMDSMSDISEFSNAELRKPDKHQLKYNHLIEKGYRYVINDGVYNSFNCIVFDHAKPAPF 566
Y+ D GVY SFNCI++DHA P
Sbjct: 317 YVND-------------------------------------GVYGSFNCILYDHAHVKPL 339
Query: 567 GIFDNEGYFKEVACETETFVSTIYGPTCDGFDCLIQQEPLPKMDVGNWIVWPNMGAYTIA 746
K + + + S+I+GPTCDG D ++++ LP+M VG+W+++ NMGAYT+A
Sbjct: 340 -------LQKRPKPDEKYYSSSIWGPTCDGLDRIVERCNLPEMHVGDWMLFENMGAYTVA 392
Query: 747 ASSCFNGIPMADVHYFM 797
A+S FNG ++Y M
Sbjct: 393 AASTFNGFQRPTIYYVM 409
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,460,680
Number of Sequences: 369166
Number of extensions: 2072422
Number of successful extensions: 5394
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5326
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)