Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_E16
(452 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P51397|DAP1_HUMAN Death-associated protein 1 (DAP-1) 37 0.026
sp|Q91XC8|DAP1_MOUSE Death-associated protein 1 (DAP-1) 35 0.059
sp|Q9QX67|DAP1_RAT Death-associated protein 1 (DAP-1) (Rap7a) 35 0.077
sp|O95630|STABP_HUMAN STAM-binding protein (Associated mole... 31 1.1
sp|O74676|CDR4_CANAL ABC transporter CDR4 29 4.2
sp|P28920|VCAP_EHV1B Major capsid protein (MCP) (Capsid pro... 29 5.5
sp|Q6S6S9|VCAP_EHV1V Major capsid protein (MCP) (Capsid pro... 29 5.5
sp|O73700|CAC1D_CHICK Voltage-dependent L-type calcium chan... 28 9.4
>sp|P51397|DAP1_HUMAN Death-associated protein 1 (DAP-1)
Length = 102
Score = 36.6 bits (83), Expect = 0.026
Identities = 28/93 (30%), Positives = 36/93 (38%)
Frame = +3
Query: 42 GHPPASKXXXXXXXXXXXXXXXXEKITSEEIRKQEEEYGTEVQPTIGAEIIPGVEIDEKK 221
GHPPA K T EE K ++E+ + P I GV K
Sbjct: 14 GHPPAVKAGGMRIVQKHPHTGD----TKEEKDKDDQEWESPSPPK-PTVFISGVIARGDK 68
Query: 222 AYPTEAVKAYHNKPIPTHNKPNKPVPHHINQPR 320
+P A + H KP + +K P HI QPR
Sbjct: 69 DFPPAAAQVAHQKPHASMDKHPSPRTQHIQQPR 101
>sp|Q91XC8|DAP1_MOUSE Death-associated protein 1 (DAP-1)
Length = 102
Score = 35.4 bits (80), Expect = 0.059
Identities = 27/93 (29%), Positives = 38/93 (40%)
Frame = +3
Query: 42 GHPPASKXXXXXXXXXXXXXXXXEKITSEEIRKQEEEYGTEVQPTIGAEIIPGVEIDEKK 221
GHPPA K ++ ++ QE E + +PT+ I GV K
Sbjct: 14 GHPPAVKAGGMRIVQKHPHTGDGKEERDKD--DQEWESTSPPKPTV---FISGVIARGDK 68
Query: 222 AYPTEAVKAYHNKPIPTHNKPNKPVPHHINQPR 320
+P A + H KP + +K P HI QPR
Sbjct: 69 DFPPAAAQVAHQKPHASMDKHVSPRTQHIQQPR 101
>sp|Q9QX67|DAP1_RAT Death-associated protein 1 (DAP-1) (Rap7a)
Length = 102
Score = 35.0 bits (79), Expect = 0.077
Identities = 27/93 (29%), Positives = 38/93 (40%)
Frame = +3
Query: 42 GHPPASKXXXXXXXXXXXXXXXXEKITSEEIRKQEEEYGTEVQPTIGAEIIPGVEIDEKK 221
GHPPA K ++ ++ QE E + +PT+ I GV K
Sbjct: 14 GHPPAVKVAGIRIVQKHPHTGDGKEKKDKD--DQEWESTSPPKPTV---YISGVIARGDK 68
Query: 222 AYPTEAVKAYHNKPIPTHNKPNKPVPHHINQPR 320
+P A + H KP + +K P HI QPR
Sbjct: 69 DFPPAAAQVAHQKPHASMDKHVSPRTQHIQQPR 101
>sp|O95630|STABP_HUMAN STAM-binding protein (Associated molecule with the SH3 domain of
STAM)
Length = 424
Score = 31.2 bits (69), Expect = 1.1
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Frame = +3
Query: 111 EKITSEEIRKQE----EEYGTEVQPTIGAEIIPGVEIDEKKAYPTEAVKAYHNKPIPTHN 278
E I ++E+ K+ +E+G +V P +G ++P +E +PT V + T
Sbjct: 167 EMIRNQELEKERLKIVQEFG-KVDPGLGGPLVPDLEKPSLDVFPTLTVSSIQPSDCHTTV 225
Query: 279 KPNKP 293
+P KP
Sbjct: 226 RPAKP 230
>sp|O74676|CDR4_CANAL ABC transporter CDR4
Length = 1490
Score = 29.3 bits (64), Expect = 4.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 221 LLFIDFNTRYYFSSYSRLHFGSIFFFLLTNF 129
++ I FN YYF R G+ FF+LL NF
Sbjct: 606 IIAIGFNLVYYFMVNFRRTPGNFFFYLLINF 636
>sp|P28920|VCAP_EHV1B Major capsid protein (MCP) (Capsid protein VP5)
Length = 1376
Score = 28.9 bits (63), Expect = 5.5
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3
Query: 192 IPGVEIDEKKAYPTEAVKAYHNKPIPTHNKPNKPVPHH 305
IP VE+ E + HN+PI NK N VPHH
Sbjct: 766 IPWVEMAEVN-FGNTGGHLVHNRPIRGENKRNPIVPHH 802
>sp|Q6S6S9|VCAP_EHV1V Major capsid protein (MCP) (Capsid protein VP5)
Length = 1376
Score = 28.9 bits (63), Expect = 5.5
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3
Query: 192 IPGVEIDEKKAYPTEAVKAYHNKPIPTHNKPNKPVPHH 305
IP VE+ E + HN+PI NK N VPHH
Sbjct: 766 IPWVEMAEVN-FGNTGGHLVHNRPIRGENKRNPIVPHH 802
>sp|O73700|CAC1D_CHICK Voltage-dependent L-type calcium channel alpha-1D subunit
(Voltage-gated calcium channel alpha subunit Cav1.3)
(CHCACHA1D)
Length = 2190
Score = 28.1 bits (61), Expect = 9.4
Identities = 15/40 (37%), Positives = 16/40 (40%)
Frame = +3
Query: 192 IPGVEIDEKKAYPTEAVKAYHNKPIPTHNKPNKPVPHHIN 311
IP EK YP YHN HN K VP+ N
Sbjct: 1747 IPSASDTEKNIYPHTGNSVYHNH--HNHNSVGKQVPNSTN 1784
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,152,871
Number of Sequences: 369166
Number of extensions: 838840
Number of successful extensions: 2375
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2371
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2435140505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)