Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_E11
(847 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50143|TCPG_XENLA T-complex protein 1, gamma subunit (TC... 407 e-113
sp|P49368|TCPG_HUMAN T-complex protein 1, gamma subunit (TC... 405 e-113
sp|Q5NVF9|TCPG_PONPY T-complex protein 1, gamma subunit (TC... 405 e-113
sp|P80318|TCPG_MOUSE T-complex protein 1, gamma subunit (TC... 404 e-112
sp|P48605|TCPG_DROME T-complex protein 1, gamma subunit (TC... 391 e-108
sp|Q9LKI7|TCPG_THAWE T-complex protein 1, gamma subunit (TC... 390 e-108
sp|O74341|TCPG_SCHPO T-complex protein 1, gamma subunit (TC... 384 e-106
sp|O00782|TCPG_OXYGR T-complex protein 1, gamma subunit (TC... 375 e-104
sp|P54408|TCPG_TETPY T-complex protein 1, gamma subunit (TC... 368 e-101
sp|P39077|TCPG_YEAST T-complex protein 1, gamma subunit (TC... 363 e-100
>sp|P50143|TCPG_XENLA T-complex protein 1, gamma subunit (TCP-1-gamma) (CCT-gamma)
Length = 547
Score = 407 bits (1047), Expect = e-113
Identities = 196/280 (70%), Positives = 238/280 (85%)
Frame = +3
Query: 3 KEIDIKRYVKIEKIPGGTIEDSVVLSGVMFNKDVVHPRMRRRIENPRILLLDLSIEYKKG 182
KEIDIK+Y K+EKIPGG IEDS VL GVM NKDV HP+MRR I+NPRI+LLD S+EYKKG
Sbjct: 190 KEIDIKKYAKVEKIPGGIIEDSCVLRGVMVNKDVTHPKMRRLIKNPRIILLDCSLEYKKG 249
Query: 183 ESQTSIEITKESDMLRALQLEEEYVEKLCADIIRMKPDLVITEKGVSDLAQHYFVKADIT 362
ESQT IEIT+E D R LQ+EEEY++++C DIIR+KPD+VITEKG+SDLAQHY VKA+IT
Sbjct: 250 ESQTEIEITREEDFARILQMEEEYIQQVCEDIIRLKPDVVITEKGISDLAQHYLVKANIT 309
Query: 363 VLRRLRKTDNVRVARCCGASIVSNIDELKEEDIGTGAGLFEIKLIGDEYFTFITECKDPK 542
+RR+RKTDN R+AR CGA I S DEL+EED+GTGAGLFEIK IGDEYFTFIT+CKDPK
Sbjct: 310 AVRRVRKTDNNRIARACGARIASRTDELREEDVGTGAGLFEIKKIGDEYFTFITDCKDPK 369
Query: 543 ACSILLRGSSKDVLNEIERNLGDAMSVARNVMVENTLVPGGGALEMAISTHLTQKAQSIV 722
AC+I+LRG+SK++L E+ERNL DAM V RNV+++ LVPGGGA EM+++ LT+K++++
Sbjct: 370 ACTIVLRGASKEILAEVERNLQDAMQVCRNVVIDPYLVPGGGASEMSVAHILTEKSKTMT 429
Query: 723 GVRQNAYLAVANALEVIPRTLAQNCGAKVLRLITELRAKH 842
GV Q Y AVA ALEVIPRTL QNCGA +R++T LRAKH
Sbjct: 430 GVEQWPYRAVAQALEVIPRTLIQNCGASTIRILTSLRAKH 469
>sp|P49368|TCPG_HUMAN T-complex protein 1, gamma subunit (TCP-1-gamma) (CCT-gamma) (hTRiC5)
Length = 545
Score = 405 bits (1041), Expect = e-113
Identities = 195/280 (69%), Positives = 239/280 (85%)
Frame = +3
Query: 3 KEIDIKRYVKIEKIPGGTIEDSVVLSGVMFNKDVVHPRMRRRIENPRILLLDLSIEYKKG 182
KEIDIK+Y ++EKIPGG IEDS VL GVM NKDV HPRMRR I+NPRI+LLD S+EYKKG
Sbjct: 191 KEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKG 250
Query: 183 ESQTSIEITKESDMLRALQLEEEYVEKLCADIIRMKPDLVITEKGVSDLAQHYFVKADIT 362
ESQT IEIT+E D R LQ+EEEY+++LC DII++KPD+VITEKG+SDLAQHY ++A+IT
Sbjct: 251 ESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANIT 310
Query: 363 VLRRLRKTDNVRVARCCGASIVSNIDELKEEDIGTGAGLFEIKLIGDEYFTFITECKDPK 542
+RR+RKTDN R+AR CGA IVS +EL+E+D+GTGAGL EIK IGDEYFTFIT+CKDPK
Sbjct: 311 AIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPK 370
Query: 543 ACSILLRGSSKDVLNEIERNLGDAMSVARNVMVENTLVPGGGALEMAISTHLTQKAQSIV 722
AC+ILLRG+SK++L+E+ERNL DAM V RNV+++ LVPGGGA EMA++ LT+K++++
Sbjct: 371 ACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMT 430
Query: 723 GVRQNAYLAVANALEVIPRTLAQNCGAKVLRLITELRAKH 842
GV Q Y AVA ALEVIPRTL QNCGA +RL+T LRAKH
Sbjct: 431 GVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKH 470
>sp|Q5NVF9|TCPG_PONPY T-complex protein 1, gamma subunit (TCP-1-gamma) (CCT-gamma)
Length = 545
Score = 405 bits (1041), Expect = e-113
Identities = 195/280 (69%), Positives = 239/280 (85%)
Frame = +3
Query: 3 KEIDIKRYVKIEKIPGGTIEDSVVLSGVMFNKDVVHPRMRRRIENPRILLLDLSIEYKKG 182
KEIDIK+Y ++EKIPGG IEDS VL GVM NKDV HPRMRR I+NPRI+LLD S+EYKKG
Sbjct: 191 KEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKG 250
Query: 183 ESQTSIEITKESDMLRALQLEEEYVEKLCADIIRMKPDLVITEKGVSDLAQHYFVKADIT 362
ESQT IEIT+E D R LQ+EEEY+++LC DII++KPD+VITEKG+SDLAQHY ++A+IT
Sbjct: 251 ESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANIT 310
Query: 363 VLRRLRKTDNVRVARCCGASIVSNIDELKEEDIGTGAGLFEIKLIGDEYFTFITECKDPK 542
+RR+RKTDN R+AR CGA IVS +EL+E+D+GTGAGL EIK IGDEYFTFIT+CKDPK
Sbjct: 311 AIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPK 370
Query: 543 ACSILLRGSSKDVLNEIERNLGDAMSVARNVMVENTLVPGGGALEMAISTHLTQKAQSIV 722
AC+ILLRG+SK++L+E+ERNL DAM V RNV+++ LVPGGGA EMA++ LT+K++++
Sbjct: 371 ACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMT 430
Query: 723 GVRQNAYLAVANALEVIPRTLAQNCGAKVLRLITELRAKH 842
GV Q Y AVA ALEVIPRTL QNCGA +RL+T LRAKH
Sbjct: 431 GVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKH 470
>sp|P80318|TCPG_MOUSE T-complex protein 1, gamma subunit (TCP-1-gamma) (CCT-gamma)
(Matricin) (mTRiC-P5)
Length = 545
Score = 404 bits (1038), Expect = e-112
Identities = 194/280 (69%), Positives = 238/280 (85%)
Frame = +3
Query: 3 KEIDIKRYVKIEKIPGGTIEDSVVLSGVMFNKDVVHPRMRRRIENPRILLLDLSIEYKKG 182
KEIDIK+Y ++EKIPGG IEDS VL GVM NKDV HPRMRR I+NPRI+LLD S+EYKKG
Sbjct: 191 KEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKG 250
Query: 183 ESQTSIEITKESDMLRALQLEEEYVEKLCADIIRMKPDLVITEKGVSDLAQHYFVKADIT 362
ESQT IEIT+E D R LQ+EEEY+ +LC DII++KPD+VITEKG+SDLAQHY ++A++T
Sbjct: 251 ESQTDIEITREEDFTRILQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVT 310
Query: 363 VLRRLRKTDNVRVARCCGASIVSNIDELKEEDIGTGAGLFEIKLIGDEYFTFITECKDPK 542
+RR+RKTDN R+AR CGA IVS +EL+E+D+GTGAGL EIK IGDEYFTFIT+CKDPK
Sbjct: 311 AIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPK 370
Query: 543 ACSILLRGSSKDVLNEIERNLGDAMSVARNVMVENTLVPGGGALEMAISTHLTQKAQSIV 722
AC+ILLRG+SK++L+E+ERNL DAM V RNV+++ LVPGGGA EMA++ LT+K++++
Sbjct: 371 ACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMT 430
Query: 723 GVRQNAYLAVANALEVIPRTLAQNCGAKVLRLITELRAKH 842
GV Q Y AVA ALEVIPRTL QNCGA +RL+T LRAKH
Sbjct: 431 GVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKH 470
>sp|P48605|TCPG_DROME T-complex protein 1, gamma subunit (TCP-1-gamma) (CCT-gamma)
Length = 544
Score = 391 bits (1004), Expect = e-108
Identities = 192/280 (68%), Positives = 232/280 (82%)
Frame = +3
Query: 6 EIDIKRYVKIEKIPGGTIEDSVVLSGVMFNKDVVHPRMRRRIENPRILLLDLSIEYKKGE 185
E+DIKRY K+EKIPGG IE+S VL GVM NKDV HP+MRR IENPRI+LLD S+EYKKGE
Sbjct: 194 EVDIKRYAKVEKIPGGAIEESCVLKGVMINKDVTHPKMRRLIENPRIVLLDCSLEYKKGE 253
Query: 186 SQTSIEITKESDMLRALQLEEEYVEKLCADIIRMKPDLVITEKGVSDLAQHYFVKADITV 365
SQT++EI E D R LQ+EEE+V+++CADII +KPDLV TEKGVSDLAQHY +KA IT
Sbjct: 254 SQTNVEIIGEQDFTRMLQIEEEFVQRICADIIAVKPDLVFTEKGVSDLAQHYLLKAGITA 313
Query: 366 LRRLRKTDNVRVARCCGASIVSNIDELKEEDIGTGAGLFEIKLIGDEYFTFITECKDPKA 545
+RRLRKTDN+R+AR CGA+IV+ +EL E+D+GTGAGLFE+K IGDEYFTF+TECK+PKA
Sbjct: 314 IRRLRKTDNLRIARACGATIVNRTEELTEKDVGTGAGLFEVKKIGDEYFTFVTECKEPKA 373
Query: 546 CSILLRGSSKDVLNEIERNLGDAMSVARNVMVENTLVPGGGALEMAISTHLTQKAQSIVG 725
C+ILLRG+SKD+LNE ERNL DA+ VARN+++E LV GGGA+EMA S LT+K
Sbjct: 374 CTILLRGASKDILNETERNLQDALHVARNLVLEPRLVAGGGAVEMAASQLLTRKQV---- 429
Query: 726 VRQNAYLAVANALEVIPRTLAQNCGAKVLRLITELRAKHA 845
+ Y AVA+ALE+IPRTLAQNCGA +R +T LRAKHA
Sbjct: 430 --KGPYTAVAHALEIIPRTLAQNCGANTIRALTALRAKHA 467
>sp|Q9LKI7|TCPG_THAWE T-complex protein 1, gamma subunit (TCP-1-gamma) (CCT-gamma)
Length = 558
Score = 390 bits (1003), Expect = e-108
Identities = 191/280 (68%), Positives = 225/280 (80%)
Frame = +3
Query: 6 EIDIKRYVKIEKIPGGTIEDSVVLSGVMFNKDVVHPRMRRRIENPRILLLDLSIEYKKGE 185
E+DIKRY K+EKIPGG I D VLSGVMFNKDV H +MRRRIENPRILLLD +EYKKGE
Sbjct: 207 EVDIKRYAKVEKIPGGEISDCAVLSGVMFNKDVTHSKMRRRIENPRILLLDTPLEYKKGE 266
Query: 186 SQTSIEITKESDMLRALQLEEEYVEKLCADIIRMKPDLVITEKGVSDLAQHYFVKADITV 365
SQT++EIT E D L++EEEYVE +C +II KPD+VITEKGVSDLAQHYF KA+IT
Sbjct: 267 SQTNVEITDEEDWNTLLKMEEEYVENMCMEIIAFKPDIVITEKGVSDLAQHYFAKANITA 326
Query: 366 LRRLRKTDNVRVARCCGASIVSNIDELKEEDIGTGAGLFEIKLIGDEYFTFITECKDPKA 545
RRLRKTDN RVAR GA+IVS DE++E DIGTG GLFE++ IG+EYF F ECKDPKA
Sbjct: 327 FRRLRKTDNNRVARATGATIVSRTDEIRESDIGTGCGLFEMRKIGEEYFAFFEECKDPKA 386
Query: 546 CSILLRGSSKDVLNEIERNLGDAMSVARNVMVENTLVPGGGALEMAISTHLTQKAQSIVG 725
C+I+LRG SKDVLNEIERNL DAM V RNV+ + L+PGGGA EMA+S L + + G
Sbjct: 387 CTIILRGGSKDVLNEIERNLTDAMQVVRNVVFDPRLLPGGGATEMAVSVGLRKAGLKLEG 446
Query: 726 VRQNAYLAVANALEVIPRTLAQNCGAKVLRLITELRAKHA 845
++Q +LAV +A+EVIPRTLAQNCG V+R +T+LRAKHA
Sbjct: 447 IQQGPFLAVGDAMEVIPRTLAQNCGVSVIRTVTQLRAKHA 486
>sp|O74341|TCPG_SCHPO T-complex protein 1, gamma subunit (TCP-1-gamma) (CCT-gamma)
Length = 528
Score = 384 bits (985), Expect = e-106
Identities = 185/280 (66%), Positives = 232/280 (82%)
Frame = +3
Query: 6 EIDIKRYVKIEKIPGGTIEDSVVLSGVMFNKDVVHPRMRRRIENPRILLLDLSIEYKKGE 185
EIDIKRY ++EK+PGG IE S VL GVM NKDV HP+MRRRIENPRI+LLD +EY+KGE
Sbjct: 190 EIDIKRYARVEKVPGGEIESSCVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEYRKGE 249
Query: 186 SQTSIEITKESDMLRALQLEEEYVEKLCADIIRMKPDLVITEKGVSDLAQHYFVKADITV 365
SQT+IEI+K++D R L++EEE V+++C II +KPDLVITEKGVSDLAQHY +KA+IT
Sbjct: 250 SQTNIEISKDTDWNRILEIEEEQVKRMCDYIIAVKPDLVITEKGVSDLAQHYLLKANITA 309
Query: 366 LRRLRKTDNVRVARCCGASIVSNIDELKEEDIGTGAGLFEIKLIGDEYFTFITECKDPKA 545
LRR RK+DN R+AR CGA+IV+ +++L+E+D+GTG GLF I +GDEY+TF+T CK+PKA
Sbjct: 310 LRRTRKSDNNRIARACGANIVNRLEDLREKDVGTGCGLFYIDKLGDEYYTFLTGCKNPKA 369
Query: 546 CSILLRGSSKDVLNEIERNLGDAMSVARNVMVENTLVPGGGALEMAISTHLTQKAQSIVG 725
C+ILLRG SKD++NE+ERNL DAM+VARNV L PGGGA EMA+S L +KA+SI G
Sbjct: 370 CTILLRGPSKDIINEVERNLQDAMAVARNVFFHPKLSPGGGATEMAVSVRLAEKARSIEG 429
Query: 726 VRQNAYLAVANALEVIPRTLAQNCGAKVLRLITELRAKHA 845
V Q Y AVA+A+E+IPRTL QNCGA ++ +TELRAKHA
Sbjct: 430 VAQWPYRAVADAIEIIPRTLVQNCGANPIKALTELRAKHA 469
>sp|O00782|TCPG_OXYGR T-complex protein 1, gamma subunit (TCP-1-gamma) (CCT-gamma)
(Chaperonin subunit CCTV gamma)
Length = 559
Score = 375 bits (964), Expect = e-104
Identities = 188/282 (66%), Positives = 234/282 (82%), Gaps = 2/282 (0%)
Frame = +3
Query: 6 EIDIKRYVKIEKIPGGTIEDSVVLSGVMFNKDVVHPRMRRRIENPRILLLDLSIEYKKGE 185
EID+KRY K+EKIPGG +E+SVVL GVMFNKDV HP MRR IENPR++LLD +EYKKGE
Sbjct: 192 EIDVKRYAKVEKIPGGLLEESVVLDGVMFNKDVTHPGMRRYIENPRVVLLDCPLEYKKGE 251
Query: 186 SQTSIEITKESDMLRALQLEEEYVEKLCA-DIIRMKPDLVITEKGVSDLAQHYFVK-ADI 359
S T++E TKE D +AL +EEE V+K+CA DI+R+KPD+VITEKGVSD AQH+ +K +
Sbjct: 252 SMTNMEFTKEEDFKKALMMEEEEVKKMCAEDILRVKPDVVITEKGVSDTAQHFLLKYGNC 311
Query: 360 TVLRRLRKTDNVRVARCCGASIVSNIDELKEEDIGTGAGLFEIKLIGDEYFTFITECKDP 539
TV+RR+RKTDN R+AR GA+I + +EL+E D+GT GLFEIK IGDEYF+F+T+C++P
Sbjct: 312 TVIRRIRKTDNNRIARVTGATIANRPEELQESDVGTKCGLFEIKKIGDEYFSFMTKCENP 371
Query: 540 KACSILLRGSSKDVLNEIERNLGDAMSVARNVMVENTLVPGGGALEMAISTHLTQKAQSI 719
KACSILLRG+SKDVLNEIERNL DA+ VARNVMV LVPGGGA+EM ++ L + +Q I
Sbjct: 372 KACSILLRGASKDVLNEIERNLHDALGVARNVMVNPKLVPGGGAIEMELACRLMEFSQKI 431
Query: 720 VGVRQNAYLAVANALEVIPRTLAQNCGAKVLRLITELRAKHA 845
G++Q + A+A ALEVIPRTLAQNCGA V+R++TELRAKHA
Sbjct: 432 EGMQQWPFKALAGALEVIPRTLAQNCGADVVRVMTELRAKHA 473
>sp|P54408|TCPG_TETPY T-complex protein 1, gamma subunit (TCP-1-gamma) (CCT-gamma)
Length = 559
Score = 368 bits (945), Expect = e-101
Identities = 176/278 (63%), Positives = 230/278 (82%)
Frame = +3
Query: 9 IDIKRYVKIEKIPGGTIEDSVVLSGVMFNKDVVHPRMRRRIENPRILLLDLSIEYKKGES 188
++IKRY K+EKIPGGT+EDSVVL GVMFNKD+ HP+MRR I+NPR++LLD +EYKKGES
Sbjct: 196 LEIKRYAKVEKIPGGTLEDSVVLDGVMFNKDITHPKMRRFIKNPRVILLDCPLEYKKGES 255
Query: 189 QTSIEITKESDMLRALQLEEEYVEKLCADIIRMKPDLVITEKGVSDLAQHYFVKADITVL 368
T++E+ KE+DM ALQ E E + +C DI++ KPD+VITEKGVSDLAQHY +K +++V+
Sbjct: 256 MTNLEMMKETDMTDALQQEMEELALMCNDILKHKPDVVITEKGVSDLAQHYLLKQNVSVI 315
Query: 369 RRLRKTDNVRVARCCGASIVSNIDELKEEDIGTGAGLFEIKLIGDEYFTFITECKDPKAC 548
RR+RKTDN R++R GA+IV+ +E++E D+G GLFE+KLIGDEYFTF+TEC++P+AC
Sbjct: 316 RRVRKTDNNRISRVSGATIVNRPEEIQESDVGKKCGLFEVKLIGDEYFTFMTECENPEAC 375
Query: 549 SILLRGSSKDVLNEIERNLGDAMSVARNVMVENTLVPGGGALEMAISTHLTQKAQSIVGV 728
SI+LRG+SKDVLNE+ERNL D ++VA+N+ V LVPGGGA+EM +S+HL + + SI G+
Sbjct: 376 SIILRGASKDVLNEMERNLHDCLAVAKNIFVNPKLVPGGGAIEMEVSSHLEKISSSIEGL 435
Query: 729 RQNAYLAVANALEVIPRTLAQNCGAKVLRLITELRAKH 842
Q + AVA ALE IP+TLAQNCG V+R ITELRAKH
Sbjct: 436 HQLPFRAVAYALEAIPKTLAQNCGVDVVRNITELRAKH 473
>sp|P39077|TCPG_YEAST T-complex protein 1, gamma subunit (TCP-1-gamma) (CCT-gamma)
Length = 534
Score = 363 bits (933), Expect = e-100
Identities = 174/280 (62%), Positives = 227/280 (81%)
Frame = +3
Query: 6 EIDIKRYVKIEKIPGGTIEDSVVLSGVMFNKDVVHPRMRRRIENPRILLLDLSIEYKKGE 185
EIDIKRYV++EKIPGG + DS VL GV+ NKDVVHP+M R IENPR++LLD +EYKKGE
Sbjct: 197 EIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGE 256
Query: 186 SQTSIEITKESDMLRALQLEEEYVEKLCADIIRMKPDLVITEKGVSDLAQHYFVKADITV 365
SQT+IEI KE D R LQ+EEE V+ +C I+ ++P LVITEKGVSDLAQHY +K +V
Sbjct: 257 SQTNIEIEKEEDWNRILQIEEEQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGGCSV 316
Query: 366 LRRLRKTDNVRVARCCGASIVSNIDELKEEDIGTGAGLFEIKLIGDEYFTFITECKDPKA 545
LRR++K+DN R+AR GA+IV+ +++LKE D+GT GLF++++IGDEYF+F+ CK+PKA
Sbjct: 317 LRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEYFSFLDNCKEPKA 376
Query: 546 CSILLRGSSKDVLNEIERNLGDAMSVARNVMVENTLVPGGGALEMAISTHLTQKAQSIVG 725
C+I+LRG SKD+LNEI+RNL DAM+VARNVM+ +L PGGGA EMA+S L +KA+ + G
Sbjct: 377 CTIMLRGGSKDILNEIDRNLQDAMAVARNVMLSPSLSPGGGATEMAVSVKLAEKAKQLEG 436
Query: 726 VRQNAYLAVANALEVIPRTLAQNCGAKVLRLITELRAKHA 845
++Q Y AVA+A+E IPRTL QN G +RL+++LRAKHA
Sbjct: 437 IQQWPYQAVADAMECIPRTLIQNAGGDPIRLLSQLRAKHA 476
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,249,655
Number of Sequences: 369166
Number of extensions: 1996712
Number of successful extensions: 6736
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6601
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)