Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_E05
(676 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48643|TCPE_HUMAN T-complex protein 1, epsilon subunit (... 346 3e-95
sp|Q5RF02|TCPE_PONPY T-complex protein 1, epsilon subunit (... 345 8e-95
sp|P80316|TCPE_MOUSE T-complex protein 1, epsilon subunit (... 343 3e-94
sp|Q9UTM4|TCPE_SCHPO T-complex protein 1, epsilon subunit (... 329 5e-90
sp|P47209|TCPE_CAEEL T-complex protein 1, epsilon subunit (... 314 1e-85
sp|O04450|TCPE_ARATH T-complex protein 1, epsilon subunit (... 310 2e-84
sp|P54411|TCPE2_AVESA T-complex protein 1, epsilon subunit ... 303 4e-82
sp|P40412|TCPE1_AVESA T-complex protein 1, epsilon subunit ... 301 8e-82
sp|P40413|TCPE_YEAST T-complex protein 1, epsilon subunit (... 299 5e-81
sp|Q9V2T3|THSB_DESMO Thermosome beta subunit (Thermosome su... 174 2e-43
>sp|P48643|TCPE_HUMAN T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
Length = 541
Score = 346 bits (888), Expect = 3e-95
Identities = 165/211 (78%), Positives = 188/211 (89%)
Frame = +3
Query: 3 GGTLSDSILVKGVIVDKDFSHPQMPKSIKDAKIAILTCAFEPPKPKTKHNLYVETVKDFE 182
GG L D+ L+KGVIVDKDFSHPQMPK ++DAKIAILTC FEPPKPKTKH L V +V+D++
Sbjct: 216 GGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYK 275
Query: 183 NLAKYEHDKFVEMVDQVKASGANLVICQWGFDDEANHLLYQKNLPAVRWVGGPEIELIAI 362
L KYE +KF EM+ Q+K +GANL ICQWGFDDEANHLL Q NLPAVRWVGGPEIELIAI
Sbjct: 276 ALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAI 335
Query: 363 ATGGRIVPRFEELTREKLGNAGVVRELSFGTTKDKMLVIEECKNSKAVTCFIRGGSRMIV 542
ATGGRIVPRF ELT EKLG AG+V+E+SFGTTKDKMLVIE+CKNS+AVT FIRGG++MI+
Sbjct: 336 ATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMII 395
Query: 543 DEAKRSLHDALCVVRNLVRDPRVVYGGGAPE 635
+EAKRSLHDALCV+RNL+RD RVVYGGGA E
Sbjct: 396 EEAKRSLHDALCVIRNLIRDNRVVYGGGAAE 426
>sp|Q5RF02|TCPE_PONPY T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
Length = 541
Score = 345 bits (884), Expect = 8e-95
Identities = 164/211 (77%), Positives = 188/211 (89%)
Frame = +3
Query: 3 GGTLSDSILVKGVIVDKDFSHPQMPKSIKDAKIAILTCAFEPPKPKTKHNLYVETVKDFE 182
GG L D+ L+KGVIVDKDFSHP+MPK ++DAKIAILTC FEPPKPKTKH L V +V+D++
Sbjct: 216 GGRLEDTKLIKGVIVDKDFSHPRMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYK 275
Query: 183 NLAKYEHDKFVEMVDQVKASGANLVICQWGFDDEANHLLYQKNLPAVRWVGGPEIELIAI 362
L KYE +KF EM+ Q+K +GANL ICQWGFDDEANHLL Q NLPAVRWVGGPEIELIAI
Sbjct: 276 ALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAI 335
Query: 363 ATGGRIVPRFEELTREKLGNAGVVRELSFGTTKDKMLVIEECKNSKAVTCFIRGGSRMIV 542
ATGGRIVPRF ELT EKLG AG+V+E+SFGTTKDKMLVIE+CKNS+AVT FIRGG++MI+
Sbjct: 336 ATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKMII 395
Query: 543 DEAKRSLHDALCVVRNLVRDPRVVYGGGAPE 635
+EAKRSLHDALCV+RNL+RD RVVYGGGA E
Sbjct: 396 EEAKRSLHDALCVIRNLIRDNRVVYGGGAAE 426
>sp|P80316|TCPE_MOUSE T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
Length = 541
Score = 343 bits (879), Expect = 3e-94
Identities = 165/211 (78%), Positives = 186/211 (88%)
Frame = +3
Query: 3 GGTLSDSILVKGVIVDKDFSHPQMPKSIKDAKIAILTCAFEPPKPKTKHNLYVETVKDFE 182
GG L D+ L+KGVIVDKDFSHPQMPK + DAKIAILTC FEPPKPKTKH L V +V+D++
Sbjct: 216 GGRLEDTKLIKGVIVDKDFSHPQMPKKVVDAKIAILTCPFEPPKPKTKHKLDVMSVEDYK 275
Query: 183 NLAKYEHDKFVEMVDQVKASGANLVICQWGFDDEANHLLYQKNLPAVRWVGGPEIELIAI 362
L KYE +KF EM+ Q+K +GANL ICQWGFDDEANHLL Q LPAVRWVGGPEIELIAI
Sbjct: 276 ALQKYEKEKFEEMIKQIKETGANLAICQWGFDDEANHLLLQNGLPAVRWVGGPEIELIAI 335
Query: 363 ATGGRIVPRFEELTREKLGNAGVVRELSFGTTKDKMLVIEECKNSKAVTCFIRGGSRMIV 542
ATGGRIVPRF ELT EKLG AGVV+E+SFGTTKDKMLVIE+CKNS+AVT FIRGG++MI+
Sbjct: 336 ATGGRIVPRFSELTSEKLGFAGVVQEISFGTTKDKMLVIEKCKNSRAVTIFIRGGNKMII 395
Query: 543 DEAKRSLHDALCVVRNLVRDPRVVYGGGAPE 635
+EAKRSLHDALCV+RNL+RD RVVYGGGA E
Sbjct: 396 EEAKRSLHDALCVIRNLIRDNRVVYGGGAAE 426
>sp|Q9UTM4|TCPE_SCHPO T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
Length = 546
Score = 329 bits (843), Expect = 5e-90
Identities = 157/211 (74%), Positives = 184/211 (87%)
Frame = +3
Query: 3 GGTLSDSILVKGVIVDKDFSHPQMPKSIKDAKIAILTCAFEPPKPKTKHNLYVETVKDFE 182
GG++ D+ LVKGV+VDKD SHPQMP I++AKIAILTC FEPPKPKTKH L + +V +FE
Sbjct: 218 GGSVDDTKLVKGVVVDKDMSHPQMPHRIENAKIAILTCPFEPPKPKTKHKLDITSVSEFE 277
Query: 183 NLAKYEHDKFVEMVDQVKASGANLVICQWGFDDEANHLLYQKNLPAVRWVGGPEIELIAI 362
L YE +KF EM+ VK +GANLVICQWGFDDEANHLL Q NLPAVRWVGGPEIELIAI
Sbjct: 278 ALQAYEKEKFQEMIKHVKDAGANLVICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAI 337
Query: 363 ATGGRIVPRFEELTREKLGNAGVVRELSFGTTKDKMLVIEECKNSKAVTCFIRGGSRMIV 542
AT GRIVPRFE+L+ +KLG+AG+VRE+SFGTT+DK+LVIE+C NS+AVT F+RG ++MIV
Sbjct: 338 ATNGRIVPRFEDLSSDKLGSAGIVREVSFGTTRDKILVIEKCANSRAVTVFVRGSNKMIV 397
Query: 543 DEAKRSLHDALCVVRNLVRDPRVVYGGGAPE 635
DEAKR+LHDALCVVRNL+RD RVVYGGGA E
Sbjct: 398 DEAKRALHDALCVVRNLIRDNRVVYGGGAAE 428
>sp|P47209|TCPE_CAEEL T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
Length = 542
Score = 314 bits (805), Expect = 1e-85
Identities = 145/211 (68%), Positives = 176/211 (83%)
Frame = +3
Query: 3 GGTLSDSILVKGVIVDKDFSHPQMPKSIKDAKIAILTCAFEPPKPKTKHNLYVETVKDFE 182
GG L D+ILVKG+++DK SHPQMPK +K+AK+AILTC FEPPKPKTKH L + + +DF+
Sbjct: 215 GGRLEDTILVKGIVIDKTMSHPQMPKELKNAKVAILTCPFEPPKPKTKHKLDITSTEDFK 274
Query: 183 NLAKYEHDKFVEMVDQVKASGANLVICQWGFDDEANHLLYQKNLPAVRWVGGPEIELIAI 362
L YE + F M+ QVK SGA L ICQWGFDDEANHLL +LPAVRWVGGPEIEL+AI
Sbjct: 275 ALRDYERETFETMIRQVKESGATLAICQWGFDDEANHLLQANDLPAVRWVGGPEIELLAI 334
Query: 363 ATGGRIVPRFEELTREKLGNAGVVRELSFGTTKDKMLVIEECKNSKAVTCFIRGGSRMIV 542
AT RIVPRF EL++EKLG AG+VRE++FG KD+ML IE+C N+KAVT F+RGG++MI+
Sbjct: 335 ATNARIVPRFSELSKEKLGTAGLVREITFGAAKDRMLSIEQCPNNKAVTIFVRGGNKMII 394
Query: 543 DEAKRSLHDALCVVRNLVRDPRVVYGGGAPE 635
DEAKR+LHDALCV+RNLVRD R+VYGGG+ E
Sbjct: 395 DEAKRALHDALCVIRNLVRDSRIVYGGGSAE 425
>sp|O04450|TCPE_ARATH T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
Length = 535
Score = 310 bits (794), Expect = 2e-84
Identities = 148/211 (70%), Positives = 173/211 (81%)
Frame = +3
Query: 3 GGTLSDSILVKGVIVDKDFSHPQMPKSIKDAKIAILTCAFEPPKPKTKHNLYVETVKDFE 182
GG L D+ L+ G+++DKD SHPQMPK I+DA IAILTC FEPPKPKTKH + ++TV+ FE
Sbjct: 212 GGKLEDTELIYGILIDKDMSHPQMPKQIEDAHIAILTCPFEPPKPKTKHKVDIDTVEKFE 271
Query: 183 NLAKYEHDKFVEMVDQVKASGANLVICQWGFDDEANHLLYQKNLPAVRWVGGPEIELIAI 362
L K E F EMV + K GA LVICQWGFDDEANHLL +NLPAVRWVGG E+ELIAI
Sbjct: 272 TLRKQEQQYFDEMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAI 331
Query: 363 ATGGRIVPRFEELTREKLGNAGVVRELSFGTTKDKMLVIEECKNSKAVTCFIRGGSRMIV 542
ATGGRIVPRF+ELT EKLG AGVVRE SFGTTK++ML IE C NSKAVT FIRGG++M++
Sbjct: 332 ATGGRIVPRFQELTPEKLGKAGVVREKSFGTTKERMLYIEHCANSKAVTVFIRGGNKMMI 391
Query: 543 DEAKRSLHDALCVVRNLVRDPRVVYGGGAPE 635
+E KRS+HDALCV RNL+R+ +VYGGGA E
Sbjct: 392 EETKRSIHDALCVARNLIRNKSIVYGGGAAE 422
>sp|P54411|TCPE2_AVESA T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36)
Length = 535
Score = 303 bits (775), Expect = 4e-82
Identities = 146/211 (69%), Positives = 173/211 (81%)
Frame = +3
Query: 3 GGTLSDSILVKGVIVDKDFSHPQMPKSIKDAKIAILTCAFEPPKPKTKHNLYVETVKDFE 182
GG L D+ LV+G+IVDKD SHPQMPK I+DA IAILTC FEPPKPKTKH + ++TV+ F+
Sbjct: 212 GGKLEDTELVQGIIVDKDMSHPQMPKRIEDAHIAILTCPFEPPKPKTKHKVDIDTVEKFQ 271
Query: 183 NLAKYEHDKFVEMVDQVKASGANLVICQWGFDDEANHLLYQKNLPAVRWVGGPEIELIAI 362
L E F EMV + K GA LVICQWGFDDEANHLL Q+ LPAVRWVGG E+ELIAI
Sbjct: 272 TLRGQEQKYFDEMVQKCKDVGATLVICQWGFDDEANHLLMQRELPAVRWVGGVELELIAI 331
Query: 363 ATGGRIVPRFEELTREKLGNAGVVRELSFGTTKDKMLVIEECKNSKAVTCFIRGGSRMIV 542
ATGGRIVPRF+EL+ EKLG AG+VRE SFGTTKD+ML IE+C NSKAVT FIRGG++M++
Sbjct: 332 ATGGRIVPRFQELSTEKLGKAGLVREKSFGTTKDRMLYIEKCANSKAVTIFIRGGNKMMI 391
Query: 543 DEAKRSLHDALCVVRNLVRDPRVVYGGGAPE 635
+E KRS+HDALCV RNL+ + +VYGGG+ E
Sbjct: 392 EETKRSIHDALCVARNLIINNSIVYGGGSAE 422
>sp|P40412|TCPE1_AVESA T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K19)
Length = 535
Score = 301 bits (772), Expect = 8e-82
Identities = 146/211 (69%), Positives = 172/211 (81%)
Frame = +3
Query: 3 GGTLSDSILVKGVIVDKDFSHPQMPKSIKDAKIAILTCAFEPPKPKTKHNLYVETVKDFE 182
GG L D+ LV+G+IVDKD SHPQMPK I DA IAILTC FEPPKPKTKH + ++TV+ F+
Sbjct: 212 GGKLEDTELVEGIIVDKDMSHPQMPKRIYDAHIAILTCPFEPPKPKTKHKVDIDTVEKFQ 271
Query: 183 NLAKYEHDKFVEMVDQVKASGANLVICQWGFDDEANHLLYQKNLPAVRWVGGPEIELIAI 362
L E F EMV + K GA LVICQWGFDDEANHLL Q+ LPAVRWVGG E+ELIAI
Sbjct: 272 TLRGQEQKYFDEMVQKCKDVGATLVICQWGFDDEANHLLMQRELPAVRWVGGVELELIAI 331
Query: 363 ATGGRIVPRFEELTREKLGNAGVVRELSFGTTKDKMLVIEECKNSKAVTCFIRGGSRMIV 542
ATGGRIVPRF+EL+ EKLG AG+VRE SFGTTKD+ML IE+C NSKAVT FIRGG++M++
Sbjct: 332 ATGGRIVPRFQELSTEKLGKAGLVREKSFGTTKDRMLYIEKCANSKAVTIFIRGGNKMMI 391
Query: 543 DEAKRSLHDALCVVRNLVRDPRVVYGGGAPE 635
+E KRS+HDALCV RNL+ + +VYGGG+ E
Sbjct: 392 EETKRSIHDALCVARNLIINNSIVYGGGSAE 422
>sp|P40413|TCPE_YEAST T-complex protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
Length = 551
Score = 299 bits (765), Expect = 5e-81
Identities = 140/217 (64%), Positives = 176/217 (81%), Gaps = 6/217 (2%)
Frame = +3
Query: 3 GGTLSDSILVKGVIVDKDFSHPQMPKSI------KDAKIAILTCAFEPPKPKTKHNLYVE 164
GG++SDS L+ GVI+DKDFSHPQMPK + K+AILTC FEPPKPKTKH L +
Sbjct: 220 GGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKPKTKHKLDIS 279
Query: 165 TVKDFENLAKYEHDKFVEMVDQVKASGANLVICQWGFDDEANHLLYQKNLPAVRWVGGPE 344
+V++++ L YE DKF EM+D VK +GA++VICQWGFDDEANHLL Q +LPAVRWVGG E
Sbjct: 280 SVEEYQKLQTYEQDKFKEMIDDVKKAGADVVICQWGFDDEANHLLLQNDLPAVRWVGGQE 339
Query: 345 IELIAIATGGRIVPRFEELTREKLGNAGVVRELSFGTTKDKMLVIEECKNSKAVTCFIRG 524
+E IAI+T GRIVPRF++L+++KLG + E FGTTKD+ML+IE+ K +K VTCF+RG
Sbjct: 340 LEHIAISTNGRIVPRFQDLSKDKLGTCSRIYEQEFGTTKDRMLIIEQSKETKTVTCFVRG 399
Query: 525 GSRMIVDEAKRSLHDALCVVRNLVRDPRVVYGGGAPE 635
++MIVDEA+R+LHD+LCVVRNLV+D RVVYGGGA E
Sbjct: 400 SNKMIVDEAERALHDSLCVVRNLVKDSRVVYGGGAAE 436
>sp|Q9V2T3|THSB_DESMO Thermosome beta subunit (Thermosome subunit 2) (Chaperonin beta
subunit)
Length = 502
Score = 174 bits (441), Expect = 2e-43
Identities = 91/211 (43%), Positives = 134/211 (63%)
Frame = +3
Query: 3 GGTLSDSILVKGVIVDKDFSHPQMPKSIKDAKIAILTCAFEPPKPKTKHNLYVETVKDFE 182
GG L DS+LV G+++DK+ HP MP+ +++AKI +L E KP+ + + + E
Sbjct: 191 GGALLDSMLVYGIVLDKEVVHPGMPRRVENAKIVLLDAPLEIEKPEIDAEIRINDPEQLE 250
Query: 183 NLAKYEHDKFVEMVDQVKASGANLVICQWGFDDEANHLLYQKNLPAVRWVGGPEIELIAI 362
+ E + ++MVD++ + GAN+V+CQ G D+ A H L +K + AVR V ++E +
Sbjct: 251 KFLQQEEEILMKMVDKIASVGANVVVCQKGIDEVAQHFLAKKGILAVRRVKRSDLEKLER 310
Query: 363 ATGGRIVPRFEELTREKLGNAGVVRELSFGTTKDKMLVIEECKNSKAVTCFIRGGSRMIV 542
ATGGRIV E+LT E LG A +V E G +DKM+ IE CKN ++V+ IRGG +V
Sbjct: 311 ATGGRIVSNIEDLTPEDLGYAALVEERKVG--EDKMVFIEGCKNPRSVSIVIRGGLERLV 368
Query: 543 DEAKRSLHDALCVVRNLVRDPRVVYGGGAPE 635
DEA+RS+ DAL V + +RD +V+ GGGA E
Sbjct: 369 DEAERSIRDALSAVADALRDGKVIPGGGAAE 399
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,343,837
Number of Sequences: 369166
Number of extensions: 1327191
Number of successful extensions: 3999
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3882
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5684835195
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)