Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_D24
(461 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1... 78 8e-15
sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1... 74 2e-13
sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precur... 70 3e-12
sp|Q8JGT9|CRVP_RHATT Tigrin precursor 68 9e-12
sp|Q7ZZN9|CRVP_TRIJE Cysteine-rich venom protein precursor ... 66 4e-11
sp|Q8JI39|CRVP_TRIFL Triflin precursor 65 6e-11
sp|Q8AVA4|CRVP_PSEAU Pseudechetoxin precursor (PsTx) 65 7e-11
sp|Q7ZTA0|CRVP_AGKPI Piscivorin precursor 65 7e-11
sp|Q8JI40|CRVP_AGKHA Ablomin precursor 64 1e-10
sp|Q7ZT99|CRVP_CROAT Catrin-1/2 precursor 64 1e-10
>sp|P48060|GLIP1_HUMAN Glioma pathogenesis-related protein 1 precursor (GliPR 1) (RTVP-1
protein)
Length = 266
Score = 78.2 bits (191), Expect = 8e-15
Identities = 37/71 (52%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Frame = +3
Query: 3 HYTQVAWAKSYAVGCAAVNCKEKTG-GSFAYGWLFICNYGPAGNFNDEAPYEVGAACSKC 179
HYTQV WA SY VGCA C + +G + + G FICNYGP GN+ PY+ GA CS C
Sbjct: 137 HYTQVVWADSYKVGCAVQFCPKVSGFDALSNGAHFICNYGPGGNY-PTWPYKRGATCSAC 195
Query: 180 PKGTSCKNNLC 212
P C +NLC
Sbjct: 196 PNNDKCLDNLC 206
>sp|Q9CWG1|GLIP1_MOUSE Glioma pathogenesis-related protein 1 precursor (GliPR 1)
Length = 255
Score = 73.9 bits (180), Expect = 2e-13
Identities = 36/70 (51%), Positives = 41/70 (58%)
Frame = +3
Query: 3 HYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNFNDEAPYEVGAACSKCP 182
HYTQV WA SY +GCA C G FIC+YGPAGN+ PY+ GA CS CP
Sbjct: 135 HYTQVVWADSYKLGCAVQLCPN--------GANFICDYGPAGNY-PTWPYKQGATCSDCP 185
Query: 183 KGTSCKNNLC 212
K C N+LC
Sbjct: 186 KDDKCLNSLC 195
>sp|P60623|CRVP_TRIST Cysteine-rich secretory protein precursor (Stecrisp)
Length = 233
Score = 69.7 bits (169), Expect = 3e-12
Identities = 33/72 (45%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +3
Query: 3 HYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGAACSK 176
HYTQ+ W KSY +GCAA C S Y + F+C Y PAGNF PY G C
Sbjct: 127 HYTQIVWYKSYRIGCAAAYCP-----SSPYSYFFVCQYCPAGNFIGKTATPYTSGTPCGD 181
Query: 177 CPKGTSCKNNLC 212
CP + C N LC
Sbjct: 182 CP--SDCDNGLC 191
>sp|Q8JGT9|CRVP_RHATT Tigrin precursor
Length = 237
Score = 68.2 bits (165), Expect = 9e-12
Identities = 32/72 (44%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +3
Query: 3 HYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGAACSK 176
HYTQ+ W KSY VGCAA C S Y + ++C Y PAGN + PY G C+
Sbjct: 133 HYTQIVWYKSYLVGCAAAYCP-----SSLYNYFYVCQYCPAGNIQGSTSTPYASGPTCAD 187
Query: 177 CPKGTSCKNNLC 212
CP ++C N LC
Sbjct: 188 CP--SNCDNGLC 197
>sp|Q7ZZN9|CRVP_TRIJE Cysteine-rich venom protein precursor (TJ-CRVP)
Length = 240
Score = 65.9 bits (159), Expect = 4e-11
Identities = 31/72 (43%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +3
Query: 3 HYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGAACSK 176
HYTQ+ W KSY +GCAA C S Y + ++C Y PAGN PY G C
Sbjct: 134 HYTQIVWYKSYRIGCAAAYCP-----SAEYSYFYVCQYCPAGNMIGKTATPYTSGPPCGD 188
Query: 177 CPKGTSCKNNLC 212
CP + C N LC
Sbjct: 189 CP--SDCDNGLC 198
>sp|Q8JI39|CRVP_TRIFL Triflin precursor
Length = 240
Score = 65.5 bits (158), Expect = 6e-11
Identities = 31/72 (43%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Frame = +3
Query: 3 HYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGAACSK 176
HYTQ+ W KSY GCAA C S Y + ++C Y PAGN PY+ G C
Sbjct: 134 HYTQIVWYKSYRAGCAAAYCP-----SSKYSYFYVCQYCPAGNIIGKTATPYKSGPPCGD 188
Query: 177 CPKGTSCKNNLC 212
CP + C N LC
Sbjct: 189 CP--SDCDNGLC 198
>sp|Q8AVA4|CRVP_PSEAU Pseudechetoxin precursor (PsTx)
Length = 238
Score = 65.1 bits (157), Expect = 7e-11
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +3
Query: 3 HYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNFNDE--APYEVGAACSK 176
HYTQV W KSY +GCA+ C +L++C Y PAGN PY+ G C+
Sbjct: 134 HYTQVVWYKSYLIGCASAKCSSSK-------YLYVCQYCPAGNIRGSIATPYKSGPPCAD 186
Query: 177 CPKGTSCKNNLC 212
CP ++C N LC
Sbjct: 187 CP--SACVNKLC 196
>sp|Q7ZTA0|CRVP_AGKPI Piscivorin precursor
Length = 240
Score = 65.1 bits (157), Expect = 7e-11
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Frame = +3
Query: 3 HYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNFNDE--APYEVGAACSK 176
H+TQ+ W KSY VGCAA C S Y + ++C Y PAGN + PY+ G C
Sbjct: 134 HFTQIVWYKSYLVGCAAAYCP-----SSEYSYFYVCQYCPAGNIIGKIATPYKSGPPCGD 188
Query: 177 CPKGTSCKNNLC 212
CP ++C N LC
Sbjct: 189 CP--SACVNGLC 198
>sp|Q8JI40|CRVP_AGKHA Ablomin precursor
Length = 240
Score = 64.3 bits (155), Expect = 1e-10
Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Frame = +3
Query: 3 HYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNFNDE--APYEVGAACSK 176
H+TQ+ W KSY GCAA C S Y + ++C Y PAGN + PY G C
Sbjct: 134 HFTQIVWYKSYRAGCAAAYCP-----SSEYSYFYVCQYCPAGNMRGKTATPYTSGPPCGD 188
Query: 177 CPKGTSCKNNLC 212
CP ++C N LC
Sbjct: 189 CP--SACDNGLC 198
>sp|Q7ZT99|CRVP_CROAT Catrin-1/2 precursor
Length = 240
Score = 64.3 bits (155), Expect = 1e-10
Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Frame = +3
Query: 3 HYTQVAWAKSYAVGCAAVNCKEKTGGSFAYGWLFICNYGPAGNF--NDEAPYEVGAACSK 176
H++QV W KSY +GCAA C S Y + ++C Y PAGN PY+ G C
Sbjct: 134 HFSQVVWYKSYRIGCAAAYCP-----SSKYSYFYVCQYCPAGNIIGKTATPYKSGPPCGD 188
Query: 177 CPKGTSCKNNLC 212
CP ++C N LC
Sbjct: 189 CP--SACDNGLC 198
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,788,168
Number of Sequences: 369166
Number of extensions: 890297
Number of successful extensions: 2663
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2571
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)