Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_D03
(650 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1) 69 1e-11
sp|P21573|YBOX1_XENLA Nuclease sensitive element binding pr... 65 1e-10
sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding pr... 65 1e-10
sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding pr... 65 1e-10
sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding pr... 65 1e-10
sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-sp... 65 2e-10
sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock doma... 65 2e-10
sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmi... 65 2e-10
sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock doma... 65 2e-10
sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain... 65 2e-10
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
Length = 253
Score = 68.6 bits (166), Expect = 1e-11
Identities = 37/77 (48%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Frame = +1
Query: 1 VKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGL 168
VKWF+ K+GYGFI+ DD +D+FVH DGE+V FD+V+G KG
Sbjct: 37 VKWFNVKSGYGFINRDD--TKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGN 94
Query: 169 EARNVTGPNGGDVIGGK 219
EA NVTGP G +V G K
Sbjct: 95 EAANVTGPEGSNVQGSK 111
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 303
Score = 65.5 bits (158), Expect = 1e-10
Identities = 36/77 (46%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Frame = +1
Query: 1 VKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGL 168
VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G KG
Sbjct: 41 VKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 98
Query: 169 EARNVTGPNGGDVIGGK 219
EA NVTGP G V G K
Sbjct: 99 EAANVTGPEGVPVQGSK 115
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 322
Score = 65.5 bits (158), Expect = 1e-10
Identities = 36/77 (46%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Frame = +1
Query: 1 VKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGL 168
VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G KG
Sbjct: 61 VKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 118
Query: 169 EARNVTGPNGGDVIGGK 219
EA NVTGP G V G K
Sbjct: 119 EAANVTGPGGVPVQGSK 135
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor) (YB-1) (CCAAT-binding
transcription factor I subunit A) (CBF-A) (Enhancer
factor I subunit A) (EFI-A) (DNA-binding protein B)
(DBPB)
Length = 324
Score = 65.5 bits (158), Expect = 1e-10
Identities = 36/77 (46%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Frame = +1
Query: 1 VKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGL 168
VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G KG
Sbjct: 63 VKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 120
Query: 169 EARNVTGPNGGDVIGGK 219
EA NVTGP G V G K
Sbjct: 121 EAANVTGPGGVPVQGSK 137
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
1) (Y-box transcription factor)
Length = 321
Score = 65.5 bits (158), Expect = 1e-10
Identities = 36/77 (46%), Positives = 44/77 (57%), Gaps = 4/77 (5%)
Frame = +1
Query: 1 VKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGL 168
VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G KG
Sbjct: 60 VKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 117
Query: 169 EARNVTGPNGGDVIGGK 219
EA NVTGP G V G K
Sbjct: 118 EAANVTGPGGVPVQGSK 134
>sp|Q9Y2T7|YBOX2_HUMAN Y-box binding protein 2 (Germ cell-specific Y-box binding protein)
(Contrin) (MSY2 homolog)
Length = 364
Score = 65.1 bits (157), Expect = 2e-10
Identities = 37/81 (45%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Frame = +1
Query: 1 VKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGL 168
VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G KG
Sbjct: 98 VKWFNVRNGYGFINRND--TKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGA 155
Query: 169 EARNVTGPNGGDVIGGKPYEP 231
EA NVTGP GG + G Y P
Sbjct: 156 EATNVTGP-GGVPVKGSRYAP 175
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
3)
sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
Length = 361
Score = 64.7 bits (156), Expect = 2e-10
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Frame = +1
Query: 1 VKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGL 168
VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G KG
Sbjct: 87 VKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 144
Query: 169 EARNVTGPNGGDVIGGK 219
EA NVTGP+G V G +
Sbjct: 145 EAANVTGPDGVPVEGSR 161
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
(mRNP3)
Length = 324
Score = 64.7 bits (156), Expect = 2e-10
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Frame = +1
Query: 1 VKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGL 168
VKWF+ +NGYGFI+ +D + +D+FVH DGE V FD+V+G KG
Sbjct: 46 VKWFNVRNGYGFINRND--SKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEKGA 103
Query: 169 EARNVTGPNGGDVIGGK 219
EA NVTGP G V G +
Sbjct: 104 EAANVTGPGGVPVKGSR 120
>sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock domain protein A) (Single-strand
DNA binding protein NF-GMB)
Length = 372
Score = 64.7 bits (156), Expect = 2e-10
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Frame = +1
Query: 1 VKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGL 168
VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G KG
Sbjct: 95 VKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 152
Query: 169 EARNVTGPNGGDVIGGK 219
EA NVTGP+G V G +
Sbjct: 153 EAANVTGPDGVPVEGSR 169
>sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain protein A) (Muscle Y-box
protein YB2) (Y-box binding protein-A) (RYB-A)
Length = 361
Score = 64.7 bits (156), Expect = 2e-10
Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Frame = +1
Query: 1 VKWFSSKNGYGFISVDDDNNSKDIFVHHXXXXXXXXXXXX----DGEEVLFDIVQGAKGL 168
VKWF+ +NGYGFI+ +D +D+FVH DGE V FD+V+G KG
Sbjct: 87 VKWFNVRNGYGFINRND--TKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGA 144
Query: 169 EARNVTGPNGGDVIGGK 219
EA NVTGP+G V G +
Sbjct: 145 EAANVTGPDGVPVEGSR 161
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,372,511
Number of Sequences: 369166
Number of extensions: 792816
Number of successful extensions: 3135
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2744
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5365037700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)