Planarian EST Database


Dr_sW_026_D02

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_026_D02
         (338 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q94572|TBA3_HOMAM  Tubulin alpha-3 chain (Alpha-III tubulin)   197   8e-51
sp|P18258|TBA1_PARLI  Tubulin alpha-1 chain                       196   1e-50
sp|P06605|TBA3_DROME  Tubulin alpha-3 chain                       196   1e-50
sp|P41383|TBA2_PATVU  Tubulin alpha-2/alpha-4 chain               196   1e-50
sp|Q8WQ47|TBA_LEPDS  Tubulin alpha chain (Allergen Lep d ?)       196   1e-50
sp|P18288|TBAT_ONCMY  Tubulin alpha chain, testis-specific        196   2e-50
sp|P05214|TBA3_MOUSE  Tubulin alpha-3/alpha-7 chain (Alpha-t...   196   2e-50
sp|P06603|TBA1_DROME  Tubulin alpha-1 chain                       196   2e-50
sp|Q25008|TBA1_HOMAM  Tubulin alpha-1 chain (Alpha-I tubulin)     196   2e-50
sp|P30436|TBA_ONCKE  Tubulin alpha chain                          194   4e-50
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
          Length = 451

 Score =  197 bits (500), Expect = 8e-51
 Identities = 98/112 (87%), Positives = 100/112 (89%)
 Frame = +1

Query: 1   FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTT 180
           FLIFH            LLMERLSVDYGKKSKLEFA+YPAPQ+ATAVVEPYNSILTTHTT
Sbjct: 135 FLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVATAVVEPYNSILTTHTT 194

Query: 181 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 336
           LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG
Sbjct: 195 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
          Length = 452

 Score =  196 bits (499), Expect = 1e-50
 Identities = 99/112 (88%), Positives = 100/112 (89%)
 Frame = +1

Query: 1   FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTT 180
           FLIFH            LLMERLSVDYGKKSKLEFAVYPAPQI+TAVVEPYNSILTTHTT
Sbjct: 135 FLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSILTTHTT 194

Query: 181 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 336
           LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG
Sbjct: 195 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
          Length = 450

 Score =  196 bits (498), Expect = 1e-50
 Identities = 98/112 (87%), Positives = 100/112 (89%)
 Frame = +1

Query: 1   FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTT 180
           FLIFH            LLMERLSVDYGKKSKLEFAVYPAPQ++TAVVEPYNSILTTHTT
Sbjct: 135 FLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTT 194

Query: 181 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 336
           LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG
Sbjct: 195 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
          Length = 452

 Score =  196 bits (498), Expect = 1e-50
 Identities = 98/112 (87%), Positives = 100/112 (89%)
 Frame = +1

Query: 1   FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTT 180
           FLIFH            LLMERLSVDYGKKSKLEFA+YPAPQI+TAVVEPYNSILTTHTT
Sbjct: 135 FLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTHTT 194

Query: 181 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 336
           LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG
Sbjct: 195 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246
>sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?)
          Length = 450

 Score =  196 bits (498), Expect = 1e-50
 Identities = 98/112 (87%), Positives = 100/112 (89%)
 Frame = +1

Query: 1   FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTT 180
           FLIFH            LLMERLSVDYGKKSKLEFAVYPAPQ++TAVVEPYNSILTTHTT
Sbjct: 135 FLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTT 194

Query: 181 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 336
           LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG
Sbjct: 195 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
          Length = 450

 Score =  196 bits (497), Expect = 2e-50
 Identities = 97/112 (86%), Positives = 100/112 (89%)
 Frame = +1

Query: 1   FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTT 180
           FLIFH            LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTT
Sbjct: 135 FLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTT 194

Query: 181 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 336
           LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG
Sbjct: 195 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
           isotype M-alpha-3/7)
 sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
 sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
          Length = 450

 Score =  196 bits (497), Expect = 2e-50
 Identities = 97/112 (86%), Positives = 100/112 (89%)
 Frame = +1

Query: 1   FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTT 180
           FLIFH            LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTT
Sbjct: 135 FLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTT 194

Query: 181 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 336
           LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG
Sbjct: 195 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
          Length = 450

 Score =  196 bits (497), Expect = 2e-50
 Identities = 97/112 (86%), Positives = 100/112 (89%)
 Frame = +1

Query: 1   FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTT 180
           FLIFH            LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTT
Sbjct: 135 FLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTT 194

Query: 181 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 336
           LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG
Sbjct: 195 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246
>sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin)
          Length = 451

 Score =  196 bits (497), Expect = 2e-50
 Identities = 98/112 (87%), Positives = 100/112 (89%)
 Frame = +1

Query: 1   FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTT 180
           FLIFH            LLMERLSVDYGKKSKLEFAVYPAPQ+ATAVVEPYNSILTTHTT
Sbjct: 135 FLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVATAVVEPYNSILTTHTT 194

Query: 181 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 336
           LEHSDCAFMVDNEAIYDICRRNLDIERP+YTNLNRLIGQIVSSITASLRFDG
Sbjct: 195 LEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDG 246
>sp|P30436|TBA_ONCKE Tubulin alpha chain
          Length = 444

 Score =  194 bits (494), Expect = 4e-50
 Identities = 97/112 (86%), Positives = 100/112 (89%)
 Frame = +1

Query: 1   FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTT 180
           FLIFH            LLMERLSVDYGKKSKLEFAVYPAPQ++TAVVEPYNSILTTHTT
Sbjct: 129 FLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTT 188

Query: 181 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 336
           LEHSDCAFMVDNEAIYDICRRNLDIERP+YTNLNRLIGQIVSSITASLRFDG
Sbjct: 189 LEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDG 240
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,342,612
Number of Sequences: 369166
Number of extensions: 691808
Number of successful extensions: 2090
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2061
length of database: 68,354,980
effective HSP length: 80
effective length of database: 53,576,180
effective search space used: 1714437760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)