Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_D02
(338 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin) 197 8e-51
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 196 1e-50
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 196 1e-50
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 196 1e-50
sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?) 196 1e-50
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 196 2e-50
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 196 2e-50
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 196 2e-50
sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin) 196 2e-50
sp|P30436|TBA_ONCKE Tubulin alpha chain 194 4e-50
>sp|Q94572|TBA3_HOMAM Tubulin alpha-3 chain (Alpha-III tubulin)
Length = 451
Score = 197 bits (500), Expect = 8e-51
Identities = 98/112 (87%), Positives = 100/112 (89%)
Frame = +1
Query: 1 FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTT 180
FLIFH LLMERLSVDYGKKSKLEFA+YPAPQ+ATAVVEPYNSILTTHTT
Sbjct: 135 FLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVATAVVEPYNSILTTHTT 194
Query: 181 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 336
LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG
Sbjct: 195 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 196 bits (499), Expect = 1e-50
Identities = 99/112 (88%), Positives = 100/112 (89%)
Frame = +1
Query: 1 FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTT 180
FLIFH LLMERLSVDYGKKSKLEFAVYPAPQI+TAVVEPYNSILTTHTT
Sbjct: 135 FLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNSILTTHTT 194
Query: 181 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 336
LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG
Sbjct: 195 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 196 bits (498), Expect = 1e-50
Identities = 98/112 (87%), Positives = 100/112 (89%)
Frame = +1
Query: 1 FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTT 180
FLIFH LLMERLSVDYGKKSKLEFAVYPAPQ++TAVVEPYNSILTTHTT
Sbjct: 135 FLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTT 194
Query: 181 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 336
LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG
Sbjct: 195 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 196 bits (498), Expect = 1e-50
Identities = 98/112 (87%), Positives = 100/112 (89%)
Frame = +1
Query: 1 FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTT 180
FLIFH LLMERLSVDYGKKSKLEFA+YPAPQI+TAVVEPYNSILTTHTT
Sbjct: 135 FLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQISTAVVEPYNSILTTHTT 194
Query: 181 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 336
LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG
Sbjct: 195 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246
>sp|Q8WQ47|TBA_LEPDS Tubulin alpha chain (Allergen Lep d ?)
Length = 450
Score = 196 bits (498), Expect = 1e-50
Identities = 98/112 (87%), Positives = 100/112 (89%)
Frame = +1
Query: 1 FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTT 180
FLIFH LLMERLSVDYGKKSKLEFAVYPAPQ++TAVVEPYNSILTTHTT
Sbjct: 135 FLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTT 194
Query: 181 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 336
LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG
Sbjct: 195 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 196 bits (497), Expect = 2e-50
Identities = 97/112 (86%), Positives = 100/112 (89%)
Frame = +1
Query: 1 FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTT 180
FLIFH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTT
Sbjct: 135 FLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTT 194
Query: 181 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 336
LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG
Sbjct: 195 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 196 bits (497), Expect = 2e-50
Identities = 97/112 (86%), Positives = 100/112 (89%)
Frame = +1
Query: 1 FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTT 180
FLIFH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTT
Sbjct: 135 FLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTT 194
Query: 181 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 336
LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG
Sbjct: 195 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 196 bits (497), Expect = 2e-50
Identities = 97/112 (86%), Positives = 100/112 (89%)
Frame = +1
Query: 1 FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTT 180
FLIFH LLMERLSVDYGKKSKLEFA+YPAPQ++TAVVEPYNSILTTHTT
Sbjct: 135 FLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTT 194
Query: 181 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 336
LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG
Sbjct: 195 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 246
>sp|Q25008|TBA1_HOMAM Tubulin alpha-1 chain (Alpha-I tubulin)
Length = 451
Score = 196 bits (497), Expect = 2e-50
Identities = 98/112 (87%), Positives = 100/112 (89%)
Frame = +1
Query: 1 FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTT 180
FLIFH LLMERLSVDYGKKSKLEFAVYPAPQ+ATAVVEPYNSILTTHTT
Sbjct: 135 FLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVATAVVEPYNSILTTHTT 194
Query: 181 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 336
LEHSDCAFMVDNEAIYDICRRNLDIERP+YTNLNRLIGQIVSSITASLRFDG
Sbjct: 195 LEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDG 246
>sp|P30436|TBA_ONCKE Tubulin alpha chain
Length = 444
Score = 194 bits (494), Expect = 4e-50
Identities = 97/112 (86%), Positives = 100/112 (89%)
Frame = +1
Query: 1 FLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQIATAVVEPYNSILTTHTT 180
FLIFH LLMERLSVDYGKKSKLEFAVYPAPQ++TAVVEPYNSILTTHTT
Sbjct: 129 FLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQVSTAVVEPYNSILTTHTT 188
Query: 181 LEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 336
LEHSDCAFMVDNEAIYDICRRNLDIERP+YTNLNRLIGQIVSSITASLRFDG
Sbjct: 189 LEHSDCAFMVDNEAIYDICRRNLDIERPSYTNLNRLIGQIVSSITASLRFDG 240
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,342,612
Number of Sequences: 369166
Number of extensions: 691808
Number of successful extensions: 2090
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2061
length of database: 68,354,980
effective HSP length: 80
effective length of database: 53,576,180
effective search space used: 1714437760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)