Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_C21
(903 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6X7J3|WOX11_ARATH WUSCHEL-related homeobox 11 32 1.9
sp|Q92896|GSLG1_HUMAN Golgi apparatus protein 1 precursor (... 32 3.2
sp|Q61543|GSLG1_MOUSE Golgi apparatus protein 1 precursor (... 31 4.1
sp|Q62638|GSLG1_RAT Golgi apparatus protein 1 precursor (Go... 31 4.1
sp|P31809|CEAM1_MOUSE Carcinoembryonic antigen-related cell... 31 5.4
sp|Q02792|RAT1_YEAST Ribonucleic acid trafficking protein 1... 31 5.4
sp|P34587|YN53_CAEEL Hypothetical protein ZC21.3 in chromos... 31 5.4
sp|Q8CI61|BAG4_MOUSE BAG-family molecular chaperone regulat... 30 9.2
sp|Q5NVM8|RNPS1_PONPY RNA-binding protein with serine-rich ... 30 9.2
sp|P40095|YEY8_YEAST Hypothetical 63.7 kDa protein in BEM2-... 30 9.2
>sp|Q6X7J3|WOX11_ARATH WUSCHEL-related homeobox 11
Length = 268
Score = 32.3 bits (72), Expect = 1.9
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +3
Query: 537 DNQQINGERSMSYTKNDSSYGGTLTQHRTNNRPSSVTSSICPNTQSPN 680
DNQ +G ++ SY T H N S+VTS +CP+ Q+ N
Sbjct: 153 DNQSNSGMENLLTMSGQMSYHEA-THHHYQNHSSNVTSILCPSDQNSN 199
>sp|Q92896|GSLG1_HUMAN Golgi apparatus protein 1 precursor (Golgi sialoglycoprotein
MG-160) (E-selectin ligand 1) (ESL-1) (Cysteine-rich
fibroblast growth factor receptor) (CFR-1)
Length = 1179
Score = 31.6 bits (70), Expect = 3.2
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +3
Query: 51 CKSIIKNLIERMQFGNL-ILETIKNEKKSIE-KWSEQVEELKRTDV 182
CKS IKN +Q+GN I+E +K KK + + ++V +L+ T++
Sbjct: 826 CKSDIKNFCSAVQYGNAQIIECLKENKKQLSTRCHQKVFKLQETEM 871
>sp|Q61543|GSLG1_MOUSE Golgi apparatus protein 1 precursor (Golgi sialoglycoprotein
MG-160) (E-selectin ligand 1) (ESL-1) (Selel)
Length = 1175
Score = 31.2 bits (69), Expect = 4.1
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +3
Query: 51 CKSIIKNLIERMQFGNL-ILETIKNEKKSIE-KWSEQVEELKRTDV 182
CKS IKN +Q+GN I+E +K KK + + ++V +L+ T++
Sbjct: 822 CKSDIKNYCSTVQYGNAQIIECLKENKKQLSTRCHQKVFKLQETEM 867
>sp|Q62638|GSLG1_RAT Golgi apparatus protein 1 precursor (Golgi sialoglycoprotein
MG-160) (E-selectin ligand 1) (ESL-1)
Length = 1171
Score = 31.2 bits (69), Expect = 4.1
Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +3
Query: 51 CKSIIKNLIERMQFGNL-ILETIKNEKKSIE-KWSEQVEELKRTDV 182
CKS IKN +Q+GN I+E +K KK + + ++V +L+ T++
Sbjct: 818 CKSDIKNYCSTVQYGNAQIIECLKENKKQLSTRCHQRVFKLQETEM 863
>sp|P31809|CEAM1_MOUSE Carcinoembryonic antigen-related cell adhesion molecule 1 precursor
(Biliary glycoprotein 1) (BGP-1) (Murine hepatitis virus
receptor) (MHV-R) (Biliary glycoprotein D)
Length = 521
Score = 30.8 bits (68), Expect = 5.4
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 591 SYGGTLTQHRTNNRPSSVTSSICPNTQSPNE-NDWAFCTGNFNRNQ 725
S GG+ + T ++PS+ ++ P+ SPN+ +D A+ NFN Q
Sbjct: 452 SGGGSDQRDLTEHKPSTSNHNLAPSDNSPNKVDDVAYTVLNFNSQQ 497
>sp|Q02792|RAT1_YEAST Ribonucleic acid trafficking protein 1 (5'-3' exoribonuclease) (p116)
Length = 1006
Score = 30.8 bits (68), Expect = 5.4
Identities = 29/118 (24%), Positives = 45/118 (38%)
Frame = +3
Query: 405 KGITNYKSVAQPRPKSQNYQQEIYWQKPFPIQLCFHESPNVFTYDNQQINGERSMSYTKN 584
KGIT YK P++ Y+ Y+ +L + Y N + N
Sbjct: 909 KGITQYK------PRTGGYRAFFYFA-----ELSRNNVQPAHNYGRNSYNSQPGF----N 953
Query: 585 DSSYGGTLTQHRTNNRPSSVTSSICPNTQSPNENDWAFCTGNFNRNQKQSASVRSKTS 758
+S Y G +R N S+ N S N N + +++RN KQS S+ +
Sbjct: 954 NSRYDGGNNNYRQN-------SNYRNNNYSGNRNSGQYSGNSYSRNNKQSRYDNSRAN 1004
>sp|P34587|YN53_CAEEL Hypothetical protein ZC21.3 in chromosome III
Length = 321
Score = 30.8 bits (68), Expect = 5.4
Identities = 32/126 (25%), Positives = 50/126 (39%), Gaps = 18/126 (14%)
Frame = +3
Query: 543 QQINGERSMSY-TKNDSSYGGTLTQHRTNNRP--------SSVTSSICPNTQSPNENDWA 695
QQ N ++ Y T + SS G + Q T N P S S+ P+T + +
Sbjct: 37 QQYNPQQQQQYGTTSFSSNGQAMYQTGTTNYPTLYQPSSSSPQYSNGAPSTTYSPTSTYG 96
Query: 696 FCTGNFNRNQKQSASVRSKTSYQIKNTSRPLTRYL----PNPNDPRFDLR-----NYIEM 848
+ + N+N + S++V S NT + Y+ N N P + R Y +
Sbjct: 97 YSSQNYNPSSASSSNVYRNPSTSYGNTQQSNQNYVAYDTTNQNSPYYYQRVPSTAQYNSV 156
Query: 849 CGHNLG 866
G N G
Sbjct: 157 LGVNAG 162
>sp|Q8CI61|BAG4_MOUSE BAG-family molecular chaperone regulator-4 (BCL2-associated
athanogene 4) (BAG-4) (Silencer of death domains)
Length = 457
Score = 30.0 bits (66), Expect = 9.2
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Frame = +3
Query: 435 QPRPKSQNYQQ--EIYWQKPFPIQLCFHESPNVFTYDNQQINGERSMSYTKNDSSYGGTL 608
QP+ S +Y + + FP + +ESP DN + + + Y+ YG
Sbjct: 294 QPKDPSYSYNPSGQGLSRHSFPCSVHQYESPGAVNNDNSDLL-DSQVQYSAEPQLYGNAS 352
Query: 609 TQHRTNNRPSSVTSSIC 659
++H +N PS+ C
Sbjct: 353 SEHPSNQVPSNNLPEEC 369
>sp|Q5NVM8|RNPS1_PONPY RNA-binding protein with serine-rich domain 1
sp|Q4R5N1|RNPS1_MACFA RNA-binding protein with serine-rich domain 1
sp|Q15287|RNPS1_HUMAN RNA-binding protein with serine-rich domain 1 (SR-related protein
LDC2)
Length = 305
Score = 30.0 bits (66), Expect = 9.2
Identities = 24/99 (24%), Positives = 43/99 (43%)
Frame = +3
Query: 537 DNQQINGERSMSYTKNDSSYGGTLTQHRTNNRPSSVTSSICPNTQSPNENDWAFCTGNFN 716
D + + + TK S + R SS +SS + S + + + TG+ +
Sbjct: 36 DEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSS 95
Query: 717 RNQKQSASVRSKTSYQIKNTSRPLTRYLPNPNDPRFDLR 833
+ SAS RS +S +++S + P+P+ R D R
Sbjct: 96 GSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNR 134
>sp|P40095|YEY8_YEAST Hypothetical 63.7 kDa protein in BEM2-NCB1 intergenic region
Length = 573
Score = 30.0 bits (66), Expect = 9.2
Identities = 18/77 (23%), Positives = 31/77 (40%)
Frame = +3
Query: 582 NDSSYGGTLTQHRTNNRPSSVTSSICPNTQSPNENDWAFCTGNFNRNQKQSASVRSKTSY 761
+++ G + Q+ N SS TSS+ P+ D N N N + ++
Sbjct: 66 DNNGNGAPMRQYNKPNFASSSTSSLPSTRNRPSRYDNMNMNMNMNMNMNMNMNMNMNNHT 125
Query: 762 QIKNTSRPLTRYLPNPN 812
+ + P R PNP+
Sbjct: 126 TSDHNAHPQYRCRPNPS 142
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,031,728
Number of Sequences: 369166
Number of extensions: 1598415
Number of successful extensions: 4094
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4075
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9126484700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)