Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_C19
(378 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O73942|APE1_AERPE Homing endonuclease I-ApeI (rRNA intro... 30 1.3
sp|Q61493|DPOLZ_MOUSE DNA polymerase zeta catalytic subunit... 30 2.2
sp|P13983|EXTN_TOBAC Extensin precursor (Cell wall hydroxyp... 28 6.5
sp|Q02953|HSF_SCHPO Heat shock factor protein (HSF) (Heat s... 28 6.5
sp|P34574|CLH_CAEEL Probable clathrin heavy chain 28 8.5
>sp|O73942|APE1_AERPE Homing endonuclease I-ApeI (rRNA intron-encoded homing endonuclease
1)
Length = 222
Score = 30.4 bits (67), Expect = 1.3
Identities = 14/17 (82%), Positives = 14/17 (82%)
Frame = +2
Query: 17 KLKGIDGRAPPGVEPAA 67
KLKGI G AP GVEPAA
Sbjct: 206 KLKGIGGGAPQGVEPAA 222
>sp|Q61493|DPOLZ_MOUSE DNA polymerase zeta catalytic subunit (Seizure-related protein 4)
Length = 3122
Score = 29.6 bits (65), Expect = 2.2
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = -2
Query: 194 QTNRSTN*ERPCTTTHRIKKELSICQSSQCPDRVRFPVLSQIKPQAPLLVVPFRQ 30
Q +STN + T+TH+ K +S+ + ++ PV S KP+ P P Q
Sbjct: 1537 QKAQSTNVVQDSTSTHQPDKNISVSNEHKKANKRTRPVTSPRKPRTPRRTKPKEQ 1591
>sp|P13983|EXTN_TOBAC Extensin precursor (Cell wall hydroxyproline-rich glycoprotein)
Length = 620
Score = 28.1 bits (61), Expect = 6.5
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -3
Query: 193 RQIAPPTKNGHAPPPT 146
R+ +PP+++GH PPPT
Sbjct: 167 RRPSPPSRHGHPPPPT 182
>sp|Q02953|HSF_SCHPO Heat shock factor protein (HSF) (Heat shock transcription factor)
(HSTF)
Length = 609
Score = 28.1 bits (61), Expect = 6.5
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = -1
Query: 147 PNQERAINLSILTVSGPGEISR 82
PNQ++++N S++TVS P ++ +
Sbjct: 580 PNQQKSVNPSLMTVSSPRQVRK 601
>sp|P34574|CLH_CAEEL Probable clathrin heavy chain
Length = 1681
Score = 27.7 bits (60), Expect = 8.5
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = -2
Query: 158 TTTHRIKKELSICQSSQCPDRVR---FPVLSQIKPQAPLLVV 42
T T +IK+ IC+ SQC D R F +++ Q PL++V
Sbjct: 738 TRTGQIKEVERICRESQCYDAERVKNFLKEAKLNDQLPLIIV 779
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,986,945
Number of Sequences: 369166
Number of extensions: 821220
Number of successful extensions: 2138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2137
length of database: 68,354,980
effective HSP length: 92
effective length of database: 51,359,360
effective search space used: 1694858880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)