Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_C18
(680 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q28259|G3P_CANFA Glyceraldehyde-3-phosphate dehydrogenas... 345 5e-95
sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase ... 345 5e-95
sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenas... 344 1e-94
sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenas... 344 1e-94
sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenas... 343 2e-94
sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenas... 342 7e-94
sp|P10096|G3P_BOVIN Glyceraldehyde-3-phosphate dehydrogenas... 340 3e-93
sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenas... 339 3e-93
sp|P16858|G3P_MOUSE Glyceraldehyde-3-phosphate dehydrogenas... 338 8e-93
sp|P80534|G3P1_JACOR Glyceraldehyde-3-phosphate dehydrogena... 338 8e-93
>sp|Q28259|G3P_CANFA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 345 bits (886), Expect = 5e-95
Identities = 166/224 (74%), Positives = 197/224 (87%)
Frame = +3
Query: 9 GTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKDGKLGVDGHAMSVYNKRNPDEI 188
G VD+VA+NDPFI+L+YMVYMF+YDSTHGKFHG V+A++GKL ++G ++S++ +R+P I
Sbjct: 24 GKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGKSISIFQERDPANI 83
Query: 189 PWDHDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSL 368
W YVVESTGVFTT+EKA AH K AK+V+ISAPSADAPMFVMGVNHEKYD SL
Sbjct: 84 KWGDAGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSADAPMFVMGVNHEKYDNSL 142
Query: 369 SIVSHASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQ 548
IVS+ASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTVDGPS K+WRDGRGAAQ
Sbjct: 143 KIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKMWRDGRGAAQ 202
Query: 549 NIIPAATGAAKAVGKDIPELSGKITGVSLRVPVPDVSVVDLTCK 680
NIIPA+TGAAKAVGK IPEL+GK+TG++ RVP P+VSVVDLTC+
Sbjct: 203 NIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCR 246
>sp|P00355|G3P_PIG Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 345 bits (886), Expect = 5e-95
Identities = 167/224 (74%), Positives = 196/224 (87%)
Frame = +3
Query: 9 GTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKDGKLGVDGHAMSVYNKRNPDEI 188
G VD+VA+NDPFI+L YMVYMF+YDSTHGKFHG V+A++GKL ++G A++++ +R+P I
Sbjct: 24 GKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENGKLVINGKAITIFQERDPANI 83
Query: 189 PWDHDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSL 368
W YVVESTGVFTT+EKA AH K AK+V+ISAPSADAPMFVMGVNHEKYD SL
Sbjct: 84 KWGDAGATYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSADAPMFVMGVNHEKYDNSL 142
Query: 369 SIVSHASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQ 548
IVS+ASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQ
Sbjct: 143 KIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQ 202
Query: 549 NIIPAATGAAKAVGKDIPELSGKITGVSLRVPVPDVSVVDLTCK 680
NIIPA+TGAAKAVGK IPEL+GK+TG++ RVP P+VSVVDLTC+
Sbjct: 203 NIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCR 246
>sp|Q9N2D5|G3P_FELCA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 344 bits (883), Expect = 1e-94
Identities = 166/224 (74%), Positives = 196/224 (87%)
Frame = +3
Query: 9 GTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKDGKLGVDGHAMSVYNKRNPDEI 188
G VD+VA+NDPFI+L+YMVYMF+YDSTHGKFHG V+A++GKL ++G ++++ +R+P I
Sbjct: 24 GKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGKPITIFQERDPANI 83
Query: 189 PWDHDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSL 368
W YVVESTGVFTT+EKA AH K AK+V+ISAPSADAPMFVMGVNHEKYD SL
Sbjct: 84 KWGDAGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSADAPMFVMGVNHEKYDNSL 142
Query: 369 SIVSHASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQ 548
IVS+ASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQ
Sbjct: 143 KIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQ 202
Query: 549 NIIPAATGAAKAVGKDIPELSGKITGVSLRVPVPDVSVVDLTCK 680
NIIPA+TGAAKAVGK IPEL+GK+TG++ RVP P+VSVVDLTC+
Sbjct: 203 NIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCR 246
>sp|P46406|G3P_RABIT Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 344 bits (882), Expect = 1e-94
Identities = 167/224 (74%), Positives = 195/224 (87%)
Frame = +3
Query: 9 GTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKDGKLGVDGHAMSVYNKRNPDEI 188
G VDVVA+NDPFI+L YMVYMF+YDSTHGKFHG V+A++GKL ++G A++++ +R+P I
Sbjct: 24 GKVDVVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENGKLVINGKAITIFQERDPANI 83
Query: 189 PWDHDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSL 368
W YVVESTGVFTT+EKA AH K AK+V+ISAPS DAPMFVMGVNHEKYD SL
Sbjct: 84 KWGDAGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSXDAPMFVMGVNHEKYDNSL 142
Query: 369 SIVSHASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQ 548
IVS+ASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQ
Sbjct: 143 KIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQ 202
Query: 549 NIIPAATGAAKAVGKDIPELSGKITGVSLRVPVPDVSVVDLTCK 680
NIIPA+TGAAKAVGK IPEL+GK+TG++ RVP P+VSVVDLTC+
Sbjct: 203 NIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCR 246
>sp|Q28554|G3P_SHEEP Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 322
Score = 343 bits (881), Expect = 2e-94
Identities = 166/224 (74%), Positives = 196/224 (87%)
Frame = +3
Query: 9 GTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKDGKLGVDGHAMSVYNKRNPDEI 188
G VD+VA+NDPFI+L YMVYMF+YDSTHGKFHG V+A++GKL ++G A++++ +R+P I
Sbjct: 13 GKVDIVAINDPFIDLHYMVYMFQYDSTHGKFHGTVKAENGKLVINGKAITIFQERDPANI 72
Query: 189 PWDHDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSL 368
W YVVESTGVFTT+EKA AH K AKKV+ISAPSADAPMFVMGVNHEKY+ +L
Sbjct: 73 KWGDAGAEYVVESTGVFTTMEKAGAHLKGG-AKKVIISAPSADAPMFVMGVNHEKYNNTL 131
Query: 369 SIVSHASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQ 548
IVS+ASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQ
Sbjct: 132 KIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQ 191
Query: 549 NIIPAATGAAKAVGKDIPELSGKITGVSLRVPVPDVSVVDLTCK 680
NIIPA+TGAAKAVGK IPEL+GK+TG++ RVP P+VSVVDLTC+
Sbjct: 192 NIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCR 235
>sp|P00356|G3P_CHICK Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 342 bits (876), Expect = 7e-94
Identities = 166/224 (74%), Positives = 195/224 (87%)
Frame = +3
Query: 9 GTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKDGKLGVDGHAMSVYNKRNPDEI 188
G V VVA+NDPFI+L+YMVYMFKYDSTHG F G V+A++GKL ++GHA++++ +R+P I
Sbjct: 24 GKVQVVAINDPFIDLNYMVYMFKYDSTHGHFKGTVKAENGKLVINGHAITIFQERDPSNI 83
Query: 189 PWDHDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSL 368
W YVVESTGVFTT+EKA AH K AK+V+ISAPSADAPMFVMGVNHEKYD SL
Sbjct: 84 KWADAGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSADAPMFVMGVNHEKYDKSL 142
Query: 369 SIVSHASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQ 548
IVS+ASCTTNCLAPLAKV++D+FGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQ
Sbjct: 143 KIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQ 202
Query: 549 NIIPAATGAAKAVGKDIPELSGKITGVSLRVPVPDVSVVDLTCK 680
NIIPA+TGAAKAVGK IPEL+GK+TG++ RVP P+VSVVDLTC+
Sbjct: 203 NIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCR 246
>sp|P10096|G3P_BOVIN Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 320
Score = 340 bits (871), Expect = 3e-93
Identities = 164/224 (73%), Positives = 196/224 (87%)
Frame = +3
Query: 9 GTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKDGKLGVDGHAMSVYNKRNPDEI 188
G VD+VA+NDPFI+L YMVYMF+YDSTHGKF+G V+A++GKL ++G A++++ +R+P I
Sbjct: 23 GKVDIVAINDPFIDLHYMVYMFQYDSTHGKFNGTVKAENGKLVINGKAITIFQERDPANI 82
Query: 189 PWDHDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSL 368
W YVVESTGVFTT+EKA AH K AK+V+ISAPSADAPMFVMGVNHEKY+ +L
Sbjct: 83 KWGDAGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSADAPMFVMGVNHEKYNNTL 141
Query: 369 SIVSHASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQ 548
IVS+ASCTTNCLAPLAKV++DHFGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQ
Sbjct: 142 KIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQ 201
Query: 549 NIIPAATGAAKAVGKDIPELSGKITGVSLRVPVPDVSVVDLTCK 680
NIIPA+TGAAKAVGK IPEL+GK+TG++ RVP P+VSVVDLTC+
Sbjct: 202 NIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCR 245
>sp|Q05025|G3P_COTJA Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 339 bits (870), Expect = 3e-93
Identities = 165/224 (73%), Positives = 195/224 (87%)
Frame = +3
Query: 9 GTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKDGKLGVDGHAMSVYNKRNPDEI 188
G V VVA+NDPFI+L+YMVYMFKYDSTHG F G V+A++GKL ++G+A++++ +R+P I
Sbjct: 24 GKVQVVAINDPFIDLNYMVYMFKYDSTHGHFKGTVKAENGKLVINGNAITIFQERDPSNI 83
Query: 189 PWDHDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSL 368
W YVVESTGVFTT+EKA AH K AK+V+ISAPSADAPMFVMGVNHEKYD SL
Sbjct: 84 KWGDAGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSADAPMFVMGVNHEKYDKSL 142
Query: 369 SIVSHASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQ 548
IVS+ASCTTNCLAPLAKV++D+FGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQ
Sbjct: 143 KIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQ 202
Query: 549 NIIPAATGAAKAVGKDIPELSGKITGVSLRVPVPDVSVVDLTCK 680
NIIPA+TGAAKAVGK IPEL+GK+TG++ RVP P+VSVVDLTC+
Sbjct: 203 NIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCR 246
>sp|P16858|G3P_MOUSE Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
Length = 333
Score = 338 bits (867), Expect = 8e-93
Identities = 163/224 (72%), Positives = 196/224 (87%)
Frame = +3
Query: 9 GTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKDGKLGVDGHAMSVYNKRNPDEI 188
G V++VA+NDPFI+L+YMVYMF+YDSTHGKF+G V+A++GKL ++G ++++ +R+P I
Sbjct: 24 GKVEIVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKAENGKLVINGKPITIFQERDPTNI 83
Query: 189 PWDHDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPSL 368
W YVVESTGVFTT+EKA AH K AK+V+ISAPSADAPMFVMGVNHEKYD SL
Sbjct: 84 KWGEAGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSADAPMFVMGVNHEKYDNSL 142
Query: 369 SIVSHASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAAQ 548
IVS+ASCTTNCLAPLAKV++D+FGI EGLMTT+HA TATQKTVDGPS KLWRDGRGAAQ
Sbjct: 143 KIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQ 202
Query: 549 NIIPAATGAAKAVGKDIPELSGKITGVSLRVPVPDVSVVDLTCK 680
NIIPA+TGAAKAVGK IPEL+GK+TG++ RVP P+VSVVDLTC+
Sbjct: 203 NIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCR 246
>sp|P80534|G3P1_JACOR Glyceraldehyde-3-phosphate dehydrogenase, muscle (GAPDH)
Length = 363
Score = 338 bits (867), Expect = 8e-93
Identities = 164/225 (72%), Positives = 196/225 (87%)
Frame = +3
Query: 6 KGTVDVVALNDPFIELDYMVYMFKYDSTHGKFHGHVEAKDGKLGVDGHAMSVYNKRNPDE 185
K VD+VA+NDPFI+L+YMVYMFKYDSTHGKF G V+A++GKL ++GHA++++ +R+P +
Sbjct: 53 KFKVDIVAINDPFIDLNYMVYMFKYDSTHGKFKGTVKAENGKLVINGHAITIFQERDPSK 112
Query: 186 IPWDHDHCYYVVESTGVFTTIEKASAHTKNNRAKKVVISAPSADAPMFVMGVNHEKYDPS 365
I W YVVESTGVFTT+EKA AH K AK+V+ISAPS DAPMFVMGVNHEKYD S
Sbjct: 113 IKWGDAGAEYVVESTGVFTTMEKAGAHLKGG-AKRVIISAPSRDAPMFVMGVNHEKYDKS 171
Query: 366 LSIVSHASCTTNCLAPLAKVVNDHFGIEEGLMTTIHAYTATQKTVDGPSSKLWRDGRGAA 545
L IVS+ASCTTNCLAPLAKV++D+FGI EGLMTT+HA TATQKTVDGPS+KLWRDG GAA
Sbjct: 172 LKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSAKLWRDGAGAA 231
Query: 546 QNIIPAATGAAKAVGKDIPELSGKITGVSLRVPVPDVSVVDLTCK 680
QNIIPA+TGAAKAVGK IPEL+GK+TG++ RVP +VSVVDLTC+
Sbjct: 232 QNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTANVSVVDLTCR 276
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,285,835
Number of Sequences: 369166
Number of extensions: 1770604
Number of successful extensions: 5037
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4679
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)