Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_C15
(863 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q96PZ0|Y1897_HUMAN Hypothetical pseudouridine synthase K... 241 1e-63
sp|O74343|YH2X_SCHPO Hypothetical pseudouridine synthase C1... 191 2e-48
sp|Q08647|YO7T_YEAST Hypothetical pseudouridine synthase YO... 190 4e-48
sp|Q17426|YQ4B_CAEEL Hypothetical pseudouridine synthase in... 139 1e-32
sp|Q6L1R2|TRUD_PICTO Probable tRNA pseudouridine synthase D... 118 2e-26
sp|O28596|TRUD_ARCFU Probable tRNA pseudouridine synthase D... 117 4e-26
sp|Q9HLL3|TRUD_THEAC Probable tRNA pseudouridine synthase D... 115 1e-25
sp|Q978K9|TRUD_THEVO Probable tRNA pseudouridine synthase D... 111 3e-24
sp|Q8TKX2|TRUD_METAC Probable tRNA pseudouridine synthase D... 109 9e-24
sp|Q58008|TRUD1_METJA Probable tRNA pseudouridine synthase ... 108 2e-23
>sp|Q96PZ0|Y1897_HUMAN Hypothetical pseudouridine synthase KIAA1897
Length = 661
Score = 241 bits (616), Expect = 1e-63
Identities = 124/289 (42%), Positives = 193/289 (66%), Gaps = 8/289 (2%)
Frame = +1
Query: 19 YCQFVLYKEGKDTISAISLIAKYLKMKPGSFTYAGTKDRRGITSQLVRIRSCAANRLKGL 198
YC FVLYKE KDT+ AI++++KYL++KP F+Y GTKD+R IT Q + + A RL L
Sbjct: 257 YCHFVLYKENKDTMDAINVLSKYLRVKPNIFSYMGTKDKRAITVQEIAVLKITAQRLAHL 316
Query: 199 NKCLNGIVLGNFSYHHSPLKLGDLYGNRFRLVIRDVHGSDKDIEAAIDRFKK-GFINYFG 375
NKCL LGNFSY +PLKLG+L GN F +V+R++ G+D ++ A++ K+ GFINY+G
Sbjct: 317 NKCLMNFKLGNFSYQKNPLKLGELQGNHFTVVLRNITGTDDQVQQAMNSLKEIGFINYYG 376
Query: 376 MQRFGSTEIRSHEIGKLAIASKWEDMIKLILEP-TPQDLPFMRECKMKFKENQNIDEFLK 552
MQRFG+T + ++++G+ + + W +++ LIL+P + + ++ +C+ ++ + ++ L+
Sbjct: 377 MQRFGTTAVPTYQVGRAILQNSWTEVMDLILKPRSGAEKGYLVKCREEWAKTKDPTAALR 436
Query: 553 ----ASCNGIERSLVSGISKHGY--ILNAIDTLPRNLKQLYVHSYQSYVWNKIASMRIRE 714
C +E L+ G+SK+G I++A +PRN + +Y+HSYQSYVWN + S RI +
Sbjct: 437 KLPVKRC--VEGQLLRGLSKYGMKNIVSAFGIIPRNNRLMYIHSYQSYVWNNMVSKRIED 494
Query: 715 CGNSAVMAGDLIEIGDQQVIVVDEADVNKYTIGDVVLPLPGYDVKLPEN 861
G V GDL+ G ++E DVN Y+I DVV+PLPG+DV P++
Sbjct: 495 YGLKPV-PGDLVLKG-ATATYIEEDDVNNYSIHDVVMPLPGFDVIYPKH 541
>sp|O74343|YH2X_SCHPO Hypothetical pseudouridine synthase C1A4.09 in chromosome II
Length = 680
Score = 191 bits (485), Expect = 2e-48
Identities = 115/320 (35%), Positives = 178/320 (55%), Gaps = 38/320 (11%)
Frame = +1
Query: 16 DYCQFVLYKEGKDTISAISLIAKYLKMKPGSFTYAGTKDRRGITSQLVRIRSCAANRLKG 195
+YC F LYKE +D++ + IA+ LK+ + + AGTKDRRG+T Q V I A+RL
Sbjct: 239 EYCHFHLYKENRDSMDCLGKIARLLKVPTRTLSIAGTKDRRGVTCQRVAIHHVRASRLAQ 298
Query: 196 LN-----KCLNGIVLGNFSYHHSPLKLGDLYGNRFRLVIRDVHGSDKDIEAAIDRFKK-G 357
LN G +LGN+SY +S L+LGDL GN F +V+R+V + + A++ K+ G
Sbjct: 299 LNSGSLKNSTYGFLLGNYSYKNSNLRLGDLKGNEFHIVVRNVITPKEKVVEALNSLKEHG 358
Query: 358 FINYFGMQRFGSTEIRSHEIGKLAIASKWEDMIKLILEPTPQDLPFMRECKMKFKENQNI 537
FINYFG+QRFG++ + +H IG + S W+ + LIL P P+ ++E + +
Sbjct: 359 FINYFGLQRFGTSSVGTHTIGVRLLQSDWKGAVDLILSPRPEHTGSVKEAIDLWHSTHDA 418
Query: 538 DEFLKASCNGI--ERSLVSGISKHGY---ILNAIDTLPRNLKQLYVHSYQSYVWNKIASM 702
+ L+ + E S++ S+ G L A +PR+L+ +Y H+YQSYVWN++AS
Sbjct: 419 EASLRILPRRMIAESSILETWSRSGNQTDYLGAFQRIPRHLRSIYPHAYQSYVWNRVASW 478
Query: 703 RIRECGNSAVMAGDLI------EIGDQQVIV---------------------VDEADVNK 801
RI+ G+ V+ GDL+ + + IV ++E +VN
Sbjct: 479 RIKNLGDRPVV-GDLVYSTESNGLSQKSPIVDPEAPDLLEDLPVSSKLSARPIEEDEVNN 537
Query: 802 YTIGDVVLPLPGYDVKLPEN 861
++I D+VLPLPG +V P+N
Sbjct: 538 FSIYDIVLPLPGRNVIYPKN 557
>sp|Q08647|YO7T_YEAST Hypothetical pseudouridine synthase YOR243C
Length = 676
Score = 190 bits (483), Expect = 4e-48
Identities = 118/325 (36%), Positives = 170/325 (52%), Gaps = 43/325 (13%)
Frame = +1
Query: 16 DYCQFVLYKEGKDTISAISLIAKYLKMKPGSFTYAGTKDRRGITSQLVRIRSCAANRLKG 195
D+ F L+KE KDT+ A+++I K L++ YAGTKDRR +T Q V I +RL
Sbjct: 218 DFIHFTLHKENKDTMEAVNVITKLLRVPSRVIRYAGTKDRRAVTCQRVSISKIGLDRLNA 277
Query: 196 LNKCLNGIVLGNFSYHHSPLKLGDLYGNRFRLVIRDV--HGSDKDIEAAIDR-----FKK 354
LN+ L G+++GN+++ + L LGDL GN F +VIRDV S+ +E + +
Sbjct: 278 LNRTLKGMIIGNYNFSDASLNLGDLKGNEFVVVIRDVTTGNSEVSLEEIVSNGCKSLSEN 337
Query: 355 GFINYFGMQRFGSTEIRSHEIGKLAIASKWEDMIKLILEPTPQDLPFMRECKMKFKENQN 534
GFINYFGMQRFG+ I +H IG+ + S W+ +LIL LP +E + + E ++
Sbjct: 338 GFINYFGMQRFGTFSISTHTIGRELLLSNWKKAAELILSDQDNVLPKSKEARKIWAETKD 397
Query: 535 IDEFLK---ASC---NGI------ERSLVSGISKHGYILNAIDTLPRNLKQLYVHSYQSY 678
LK C N + +R G AI +PRNL+ +YVH+YQSY
Sbjct: 398 AALALKQMPRQCLAENALLYSLSNQRKEEDGTYSENAYYTAIMKIPRNLRTMYVHAYQSY 457
Query: 679 VWNKIASMRIRECGNSAVMAGDLIEIGDQQVIV--VDEADVN------------------ 798
VWN IAS RI G V+ +I+ ++ ++ +D+ D +
Sbjct: 458 VWNSIASKRIELHGLKLVVGDLVIDTSEKSPLISGIDDEDFDEDVREAQFIRAKAVTQED 517
Query: 799 ----KYTIGDVVLPLPGYDVKLPEN 861
KYT+ DVVLP PG+DV P N
Sbjct: 518 IDSVKYTMEDVVLPSPGFDVLYPSN 542
>sp|Q17426|YQ4B_CAEEL Hypothetical pseudouridine synthase in chromosome V
Length = 577
Score = 139 bits (350), Expect = 1e-32
Identities = 93/291 (31%), Positives = 147/291 (50%), Gaps = 19/291 (6%)
Frame = +1
Query: 22 CQFVLYKEGKDTISAISLIAKYLKMKPGSFTYAGTKDRRGITSQLVRIRSCAANRLKGLN 201
C F + KE K+T A LIAK+L + P + G KD+R +TSQ V + + LN
Sbjct: 152 CHFTICKENKETSFACQLIAKFLNVGPNNIRTHGIKDKRAVTSQRVSVTKVHERTILDLN 211
Query: 202 KCLNGIVLGNFSYHHSPLKLGDLYGNRFRLVIRDV-HGSDKDIEAAIDRFKK-GFINYFG 375
L GI + Y P+++G +GNRF +V+R + S++ + ++ F+ GFINYFG
Sbjct: 212 SKLRGIRVFGCEYKDDPVQMGAHWGNRFSIVLRSLPDDSEQLLHQRLETFQNTGFINYFG 271
Query: 376 MQRFGSTEIRSHEIGKLAIASKWEDMIKLILEPTPQD------LPFMRECKMKFKENQNI 537
QRFGS + EIG + WE +K+I+ D + + +C + + +
Sbjct: 272 TQRFGSRSSTTAEIGLAIVKRDWEKAVKMIMTNAMPDHLGYGSVGYAAKCFSQTGDARKA 331
Query: 538 DEFLKA--SCNGIERSLVSGISKHGYILNAI-DTLPRNLKQLYVHSYQSYVWNKIASMRI 708
LK + +E +++ +SK G N I + +P + LYVH+YQS +WNK+AS R+
Sbjct: 332 FSKLKGAQAFATVEGNILKCLSKGGTWQNCITEAIPIQSRSLYVHAYQSLIWNKVASRRV 391
Query: 709 RECGNSAVMAGDLIEIGDQQVIVVDEADV--NKYTIG------DVVLPLPG 837
+E G V E+DV N +++G D+ +PLPG
Sbjct: 392 KEYGTR-----------------VHESDVGANGFSLGEHATHYDIHIPLPG 425
>sp|Q6L1R2|TRUD_PICTO Probable tRNA pseudouridine synthase D (tRNA-uridine isomerase D)
(tRNA pseudouridylate synthase D)
Length = 414
Score = 118 bits (296), Expect = 2e-26
Identities = 86/287 (29%), Positives = 145/287 (50%), Gaps = 18/287 (6%)
Frame = +1
Query: 52 DTISAISLIAKYLKMKPGSFTYAGTKDRRGITSQLVRIRSCAANRLKGLNKCLNGIVLGN 231
DT + +A+++ + TYAGTKD+R +T+Q I N + + +NGI +
Sbjct: 64 DTNRFVMYLARHMNISRKRITYAGTKDKRAVTTQYFCI-----NTDRMFSGSINGIEIIE 118
Query: 232 FSYHHSPLKLGDLYGNRFRLVIRDVHGSDKDIEAAIDRF--KKGFINYFGMQRFGSTEIR 405
+ +KLGDLYGNRF + + +KD + K GF N+FG+QRFGS
Sbjct: 119 QFRSNDIIKLGDLYGNRFLIKVDYPGDLEKDSSETLKEINEKGGFPNFFGVQRFGSMRSN 178
Query: 406 SHEIGKLAIASKWEDMIKLILEPTPQDLPFMRECKMKFKENQNIDEFLKASCNGI--ERS 579
+H IGK+ I ++E L D E ++ + +N + LK + ERS
Sbjct: 179 THYIGKMIIKGEYEKAADKYLYDDNFD---TEEYRINYGKNMDAKNSLKEYPGNLTFERS 235
Query: 580 LVSGISKHGYILNAIDTLPRNLKQLYVHSYQSYVWNKIASMRIRECGN-SAVMAGDLIEI 756
++ I+ G +A + LP+NL ++VH++QSY++NK+ S R++ + V+ GDL+
Sbjct: 236 ILGAIAS-GNKSSAFNALPKNLSIMFVHAFQSYLFNKMLSERMKHVKDLKTVIEGDLLYN 294
Query: 757 GDQQVIVVDE--ADVNKYTIGDV-----------VLPLPGYDVKLPE 858
D + + N+Y + + V+PLPG+D ++P+
Sbjct: 295 IDDYFNPDKKRLIEANRYNLEMLNNLSSMDKIRPVIPLPGFDTRMPD 341
>sp|O28596|TRUD_ARCFU Probable tRNA pseudouridine synthase D (tRNA-uridine isomerase D)
(tRNA pseudouridylate synthase D)
Length = 411
Score = 117 bits (293), Expect = 4e-26
Identities = 84/304 (27%), Positives = 152/304 (50%), Gaps = 21/304 (6%)
Frame = +1
Query: 4 SGDDDYCQFVLYKEGKDTISAISLIAKYLKMKPGSFTYAGTKDRRGITSQLVRIRSCAAN 183
S + D+ + K+ DT++ +++ L + ++AGTKD+R +T Q I
Sbjct: 39 SDEGDFLIIRVEKKNWDTLNFARVLSNALGISQKRISFAGTKDKRALTVQYFSIYGVKKE 98
Query: 184 RLKGLNKCLNGIVLGNFSYHHSPLKLGDLYGNRFRLVIRDVHGSDKDIEAAIDRFKKGFI 363
++ +N L + Y ++LGDL GN FR+ + + E + +KG
Sbjct: 99 EIERVN--LKDAKIEVIGYARRAIQLGDLLGNFFRIRVYGCRDGEIFQETRNELMEKGTP 156
Query: 364 NYFGMQRFGSTEIRSHEIGKLAIASKWEDMIKLIL----EPTPQDLPFMRECKMKFKEN- 528
N+FG+QRFGS +HE+GKL + + +E+ + + E +++ +RE + ++
Sbjct: 157 NFFGLQRFGSIRFITHEVGKLILQNNYEEAFWVYVAKPFEGENEEVRKIREILWETRDAK 216
Query: 529 ---QNIDEFLKASCNGIERSLVSGISKHGYILNAIDTLPRNLKQLYVHSYQSYVWNKIAS 699
+ + ++L+ ER+L+ + + A+ +LP+NLK ++VH+YQSY++N++ S
Sbjct: 217 LGLRELPKYLR-----YERNLLQKLREGKSEEEALLSLPKNLKMMFVHAYQSYIFNRLLS 271
Query: 700 MRIRECGN-SAVMAGDLI---------EIGDQQVIVVDEADVN---KYTIGDVVLPLPGY 840
RIR+ G+ + GD D + V+EA V K + + LPL GY
Sbjct: 272 ERIRQFGSLKTLEEGDFACYLTFKTRPTFSDCSEVEVNEARVRFLVKERVASLALPLVGY 331
Query: 841 DVKL 852
D KL
Sbjct: 332 DTKL 335
>sp|Q9HLL3|TRUD_THEAC Probable tRNA pseudouridine synthase D (tRNA-uridine isomerase D)
(tRNA pseudouridylate synthase D)
Length = 411
Score = 115 bits (289), Expect = 1e-25
Identities = 78/237 (32%), Positives = 123/237 (51%), Gaps = 6/237 (2%)
Frame = +1
Query: 52 DTISAISLIAKYLKMKPGSFTYAGTKDRRGITSQLVRIRS---CAANRLKGLNKCLNGIV 222
DT + IA L++ +YAGTKD+R Q I + + KG +
Sbjct: 53 DTNRIVEEIASALRISRKRISYAGTKDKRARKIQYFCINAPVDVSVLAFKGFR------I 106
Query: 223 LGNFSYHHSPLKLGDLYGNRFRLVIRDVHGSDKDIEAAIDRFKK--GFINYFGMQRFGST 396
+ F H L+LGDL N FR IR SD IE ++ + GF NYFG QRFGS
Sbjct: 107 IDRFRSDHY-LRLGDLTANHFR--IRFQGASDDYIEQRYEKMMECGGFPNYFGQQRFGSR 163
Query: 397 EIRSHEIGKLAIASKWEDMIKLILEPTPQDLP-FMRECKMKFKENQNIDEFLKASCNGIE 573
+H++G+L + ++ED ++L L D+ + RE N+ +++F + E
Sbjct: 164 RRNTHDVGRLIVTGRYEDAVRLYLYDERYDIEDYRREFIETLDYNRALEKFPRTL--RFE 221
Query: 574 RSLVSGISKHGYILNAIDTLPRNLKQLYVHSYQSYVWNKIASMRIRECGNSAVMAGD 744
RS++ ++H A D LP+NL ++VH+YQSY++N++ S+RI + G + + GD
Sbjct: 222 RSIIGYYAQHHTFKGAFDALPKNLSIMFVHAYQSYLFNRMLSLRIEKYGLNRAIPGD 278
>sp|Q978K9|TRUD_THEVO Probable tRNA pseudouridine synthase D (tRNA-uridine isomerase D)
(tRNA pseudouridylate synthase D)
Length = 409
Score = 111 bits (277), Expect = 3e-24
Identities = 79/237 (33%), Positives = 124/237 (52%), Gaps = 5/237 (2%)
Frame = +1
Query: 52 DTISAISLIAKYLKMKPGSFTYAGTKDRRGITSQLVRIRSCAANRLKGLNKCLNGIVLGN 231
DT + IA+ L M T+AGTKD+R + Q I S + + L+ + V+ +
Sbjct: 47 DTNRIAAEIARRLHMSRKRVTFAGTKDKRAVKLQYFCINSADVD-VASLSGIKDFEVIES 105
Query: 232 FSYHHSPLKLGDLYGNRFRLVIRDVHGSDKDIEAAIDRF-----KKGFINYFGMQRFGST 396
F H L LGDL N F++ + D E +R+ K GF N+FG QRFGS
Sbjct: 106 FKSSHY-LTLGDLIANHFKIRFYGI-----DPEMFRERYVHIISKGGFPNFFGDQRFGSR 159
Query: 397 EIRSHEIGKLAIASKWEDMIKLILEPTPQDLPFMRECKMKFKENQNIDEFLKASCNGIER 576
+HEIGKL I ++E+ +K + D R+ + + + E S + ER
Sbjct: 160 RRNTHEIGKLIIKGEYEEAVKKYIYDEKYDKESYRKHFIDTLDYKTALERFPHSLS-FER 218
Query: 577 SLVSGISKHGYILNAIDTLPRNLKQLYVHSYQSYVWNKIASMRIRECGNSAVMAGDL 747
SL+ +++G A D+LP+NL ++VH+YQSY++N+I R++ G +AV+ GD+
Sbjct: 219 SLIGYYARNGTFKGAFDSLPKNLTIMFVHAYQSYLFNRILDERLKIYGLNAVLPGDI 275
>sp|Q8TKX2|TRUD_METAC Probable tRNA pseudouridine synthase D (tRNA-uridine isomerase D)
(tRNA pseudouridylate synthase D)
Length = 441
Score = 109 bits (273), Expect = 9e-24
Identities = 90/305 (29%), Positives = 145/305 (47%), Gaps = 25/305 (8%)
Frame = +1
Query: 10 DDDYCQFVLYKEGKDTISAISLIAKYLKMKPGSFTYAGTKDRRGITSQLVRIRSCAANRL 189
D Y L K DT +AK L++ + AGTKD+R +T+Q + I A +
Sbjct: 49 DGRYLVLELTKRDWDTHHFTRTLAKILQISQKRISVAGTKDKRALTTQKISIFDIDALEI 108
Query: 190 KGLNKCLNGIVLGNFSYHHSPLKLGDLYGNRFRLVIRDVHGSDKDIEAAIDRFKK----- 354
+ ++ L + L ++LGDL+GN F + IRD+ S ++ +++
Sbjct: 109 EKIH--LKDVELKVLGRSRKSVELGDLWGNEFIITIRDISSSPEETRTILEKTNSKVLTQ 166
Query: 355 -GFINYFGMQRFGSTEIRSHEIGKLAIASKWEDMIKL-ILEPTPQDLPFMRECKMKFKEN 528
G N+FG+QRFGS +H +GK + +E L I EP P++ + + KE
Sbjct: 167 GGVPNFFGVQRFGSVRSVTHLVGKAIVEGNFEKAAMLYIAEPFPEEPEETKAARQFVKET 226
Query: 529 QNIDEFLKASCN--GIERSLVSG-ISKHGYILNAIDTLPRNLKQLYVHSYQSYVWNKIAS 699
++ E LK G ER++++ IS A LP+NL +++VH+YQSY++N I
Sbjct: 227 RDFKEGLKTYPLRLGHERAMMNHLISNPEDYSGAFSVLPKNLYRMFVHAYQSYIYNMILC 286
Query: 700 MRIRECGNS--AVMAGDLI----EIG---DQQVIVVDEADVN------KYTIGDVVLPLP 834
RI E G S + GD++ E G + V VN K+ + PLP
Sbjct: 287 RRI-ESGISLNRAVEGDIVCFRNEAGLPDSSKTEKVTSETVNAMNRLIKHGRAFITAPLP 345
Query: 835 GYDVK 849
G++ +
Sbjct: 346 GFNTE 350
>sp|Q58008|TRUD1_METJA Probable tRNA pseudouridine synthase D 1 (tRNA-uridine isomerase D
1) (tRNA pseudouridylate synthase D 1)
Length = 392
Score = 108 bits (270), Expect = 2e-23
Identities = 77/251 (30%), Positives = 128/251 (50%), Gaps = 6/251 (2%)
Frame = +1
Query: 16 DYCQFVLYKEGKDTISAISLIAKYLKMKPGSFTYAGTKDRRGITSQLVRIRSCAANRLKG 195
+Y F L K T+ AI IA + + F +AG KD+ +T+Q V C +L+
Sbjct: 54 NYIHFTLEKRNWTTLDAIREIANRVGKQRKHFGFAGNKDKYAVTTQRV---GCFNVKLED 110
Query: 196 LNKC-LNGIVLGNFSYHHSPLKLGDLYGNRFRLVIRDVHGSDKDIEAAIDRF--KKGFIN 366
L K + GI+L +F + ++LGDL+GNRF + +R+ K++E A+++ K F+N
Sbjct: 111 LMKVKIKGIILRDFQKTNRKIRLGDLWGNRFTIRVREPELKGKELEEALNKLCKLKYFLN 170
Query: 367 YFGMQRFGSTEIRSHEIGKLAIASKWEDMIKLIL-EPTPQDLPFMRECKMKFKENQNIDE 543
Y+G+QRFG+T +H +G+ I WE P P D + + + +N E
Sbjct: 171 YYGVQRFGTTRPITHIVGRFIIERDWEGAFHAYCGTPLPYD-DKKSKLARELVDEENFKE 229
Query: 544 FLKASCNGI--ERSLVSGISKHGYILNAIDTLPRNLKQLYVHSYQSYVWNKIASMRIREC 717
K ER ++ + G A LP L+ +++++YQSY++N+I + R E
Sbjct: 230 AYKKFPKAFFYERRMIKAYIETGSYQKAFMILPPYLRCMFINAYQSYLFNEIINRRF-EY 288
Query: 718 GNSAVMAGDLI 750
G M GD++
Sbjct: 289 GFEP-MEGDIL 298
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,090,921
Number of Sequences: 369166
Number of extensions: 1837371
Number of successful extensions: 4273
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4144
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8582957970
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)