Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_C06
(671 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P40206|YM16_YEAST Hypothetical 24.7 kDa protein in POM15... 115 1e-25
sp|Q8NH51|OR8K3_HUMAN Olfactory receptor 8K3 33 0.52
sp|P59524|KSGA_BUCBP Dimethyladenosine transferase (S-adeno... 30 4.4
sp|Q8CCP0|SDCG1_MOUSE Serologically defined colon cancer an... 30 5.7
sp|O60524|SDCG1_HUMAN Serologically defined colon cancer an... 30 5.7
sp|P39952|OXA1_YEAST Inner membrane protein OXA1, mitochond... 30 7.5
sp|Q89AH2|RLUC_BUCBP Ribosomal large subunit pseudouridine ... 30 7.5
>sp|P40206|YM16_YEAST Hypothetical 24.7 kDa protein in POM152-REC114 intergenic region
Length = 208
Score = 115 bits (287), Expect = 1e-25
Identities = 59/143 (41%), Positives = 86/143 (60%), Gaps = 5/143 (3%)
Frame = +3
Query: 3 MVFYFTSEIGSIS--YTIFMGRDKFENEDLIKWGWPE--DIWFHVDKLSSAHVYLRLHEN 170
MV+++ S+ S Y I MG+DKFEN+ LIKW + E +WFH DK SS HVYL+L N
Sbjct: 1 MVYFYESKPTEYSTPYQIVMGKDKFENDLLIKWSYRELNYVWFHADKYSSGHVYLKLRPN 60
Query: 171 E-TLESVPDAIIQDCAQLVKENSIQGCKQNNVDVVYTPWSNLKKTNDMDVGQIGFHKNKN 347
E T++ +P +I DC QL K SIQG K ++ TPW NL+K M+ G++ F +
Sbjct: 61 EKTIDDIPQEVICDCLQLCKSESIQGNKMPQCTILITPWHNLRKNRYMNPGEVSFKSLRQ 120
Query: 348 VISVHIDKKNSETIKRLNKTKSE 416
+ ++++ + RL KT+ E
Sbjct: 121 CRKMECGARDNKILNRLAKTRVE 143
>sp|Q8NH51|OR8K3_HUMAN Olfactory receptor 8K3
Length = 312
Score = 33.5 bits (75), Expect = 0.52
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Frame = -3
Query: 534 VFVWQVLFPLSALTFQIHVI-------SYVL*NRVLLVIIGSPL*DPQIWSYL-TF*LFH 379
VF+ LF LSA+++ ++V + ++ RV V++ P S L T +F
Sbjct: 106 VFIGSELFILSAMSYDLYVAICNPLLYTVIMSRRVCQVLVAIPYLYCTFISLLVTIKIFT 165
Query: 378 YSFCQYEQILHFY 340
SFC Y I HFY
Sbjct: 166 LSFCGYNVISHFY 178
>sp|P59524|KSGA_BUCBP Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase)
Length = 260
Score = 30.4 bits (67), Expect = 4.4
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 612 NLPYLCYLPFLKYQIIYHNLLLPLRFVFVWQVLFPLSAL 496
NLPY +P L Y +HN ++ + F+F +V L A+
Sbjct: 108 NLPYNISIPILFYLFKFHNNIIDMNFMFQKEVASKLLAI 146
>sp|Q8CCP0|SDCG1_MOUSE Serologically defined colon cancer antigen 1
Length = 1064
Score = 30.0 bits (66), Expect = 5.7
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 27 IGSISYTIFMGRDKFENEDLIK-WGWPEDIWFHVDKLSSAHVYLRLHENETLESVPDAII 203
I S +Y I GRD+ +NE ++K + P DI+ H D + ++ N T E +P +
Sbjct: 532 ISSENYLIIGGRDQQQNEIIVKRYLTPGDIYVHADLHGATSCVIK---NPTGEPIPPRTL 588
Query: 204 QDCAQL 221
+ +
Sbjct: 589 TEAGTM 594
>sp|O60524|SDCG1_HUMAN Serologically defined colon cancer antigen 1 (Antigen NY-CO-1)
Length = 1076
Score = 30.0 bits (66), Expect = 5.7
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = +3
Query: 27 IGSISYTIFMGRDKFENEDLIK-WGWPEDIWFHVDKLSSAHVYLRLHENETLESVPDAII 203
I S +Y I GRD+ +NE ++K + P DI+ H D + ++ N T E +P +
Sbjct: 534 ISSENYLIIGGRDQQQNEIIVKRYLTPGDIYVHADLHGATSCVIK---NPTGEPIPPRTL 590
Query: 204 QDCAQL 221
+ +
Sbjct: 591 TEAGTM 596
>sp|P39952|OXA1_YEAST Inner membrane protein OXA1, mitochondrial precursor (Oxidase
assembly protein 1) (Cytochrome oxidase biogenesis
protein OXA1)
Length = 402
Score = 29.6 bits (65), Expect = 7.5
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = +3
Query: 93 WGWPEDIWFHVDKLSSAHVYLRLHENETLESVPDAIIQDCAQLVKENSIQGCKQNNVDVV 272
W WP DI HV L + HVY L T+ + I L ++S + +++
Sbjct: 106 WYWPSDIIQHV--LEAVHVYSGLPWWGTIAATTILIRCLMFPLYVKSSDTVARNSHIKPE 163
Query: 273 YTPWSN-LKKTNDMDVGQIGFHKNKNVISVH 362
+N L T D+ GQ+ + K ++S H
Sbjct: 164 LDALNNKLMSTTDLQQGQLVAMQRKKLLSSH 194
>sp|Q89AH2|RLUC_BUCBP Ribosomal large subunit pseudouridine synthase C (rRNA-uridine
isomerase C) (rRNA pseudouridylate synthase C)
Length = 315
Score = 29.6 bits (65), Expect = 7.5
Identities = 20/72 (27%), Positives = 37/72 (51%)
Frame = +3
Query: 195 AIIQDCAQLVKENSIQGCKQNNVDVVYTPWSNLKKTNDMDVGQIGFHKNKNVISVHIDKK 374
+I+++ + ++E I K+ V +V+ W ++ K+ + + KNKN+ V ID K
Sbjct: 158 SILRNLHEQLREKKI---KKKYVALVHGVWPDILKSISKPLLKTSSRKNKNI--VKIDPK 212
Query: 375 NSETIKRLNKTK 410
E+I N K
Sbjct: 213 GKESITHFNIKK 224
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,919,435
Number of Sequences: 369166
Number of extensions: 1146022
Number of successful extensions: 2985
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2980
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5636246860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)