Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_C01
(298 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q03577|SYD_CAEEL Aspartyl-tRNA synthetase (Aspartate--tR... 98 7e-21
sp|Q922B2|SYD_MOUSE Aspartyl-tRNA synthetase (Aspartate--tR... 96 2e-20
sp|P14868|SYD_HUMAN Aspartyl-tRNA synthetase (Aspartate--tR... 96 3e-20
sp|P15178|SYD_RAT Aspartyl-tRNA synthetase (Aspartate--tRNA... 96 3e-20
sp|P04802|SYDC_YEAST Aspartyl-tRNA synthetase, cytoplasmic ... 75 6e-14
sp|O58776|SYD_PYRHO Aspartyl-tRNA synthetase (Aspartate--tR... 56 3e-08
sp|Q979P6|SYD_THEVO Aspartyl-tRNA synthetase (Aspartate--tR... 53 2e-07
sp|O29342|SYD_ARCFU Aspartyl-tRNA synthetase (Aspartate--tR... 53 2e-07
sp|Q980V3|SYD_SULSO Aspartyl-tRNA synthetase (Aspartate--tR... 53 2e-07
sp|Q976I3|SYD_SULTO Aspartyl-tRNA synthetase (Aspartate--tR... 52 3e-07
>sp|Q03577|SYD_CAEEL Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 531
Score = 97.8 bits (242), Expect = 7e-21
Identities = 55/107 (51%), Positives = 68/107 (63%), Gaps = 9/107 (8%)
Frame = +3
Query: 3 ESCSQSDVEIQIESLKVVSRCKSRLPLQIEDATR---------PENDNNLAKVNLDTRLD 155
ESC+Q DVE+ + + VVS +LPLQIEDA+R E +N LA VNLDTRLD
Sbjct: 152 ESCTQKDVELLAQQVFVVSTSAPKLPLQIEDASRRAPTDEEKASEQENQLAVVNLDTRLD 211
Query: 156 NRVLELRTVTNQAIMTLKGGVFMNFCNYLTSRGFVPIFCPSIISAAS 296
NRV++LRT T+ AI ++ G+ F N L RGFV I P IISA S
Sbjct: 212 NRVIDLRTPTSHAIFRIQAGICNQFRNILDVRGFVEIMAPKIISAPS 258
>sp|Q922B2|SYD_MOUSE Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 501
Score = 96.3 bits (238), Expect = 2e-20
Identities = 51/100 (51%), Positives = 69/100 (69%), Gaps = 3/100 (3%)
Frame = +3
Query: 6 SCSQSDVEIQIESLKVVSRCKSRLPLQIEDATRPE---NDNNLAKVNLDTRLDNRVLELR 176
SC+Q DVE+ ++ + V+S + RLPLQ++DA RPE ++ A VN DTRLDNRV++LR
Sbjct: 129 SCTQQDVELHVQKIYVISLAEPRLPLQLDDAIRPEVEGEEDGRATVNQDTRLDNRVIDLR 188
Query: 177 TVTNQAIMTLKGGVFMNFCNYLTSRGFVPIFCPSIISAAS 296
T T+QAI L+ G+ F L ++GFV I P IISAAS
Sbjct: 189 TSTSQAIFRLQSGICHLFRETLINKGFVEIQTPKIISAAS 228
>sp|P14868|SYD_HUMAN Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 501
Score = 95.9 bits (237), Expect = 3e-20
Identities = 50/100 (50%), Positives = 68/100 (68%), Gaps = 3/100 (3%)
Frame = +3
Query: 6 SCSQSDVEIQIESLKVVSRCKSRLPLQIEDATRPE---NDNNLAKVNLDTRLDNRVLELR 176
SC+Q DVE+ ++ + V+S + RLPLQ++DA RPE + A VN DTRLDNRV++LR
Sbjct: 129 SCTQQDVELHVQKIYVISLAEPRLPLQLDDAVRPEAEGEEEGRATVNQDTRLDNRVIDLR 188
Query: 177 TVTNQAIMTLKGGVFMNFCNYLTSRGFVPIFCPSIISAAS 296
T T+QA+ L+ G+ F L ++GFV I P IISAAS
Sbjct: 189 TSTSQAVFRLQSGICHLFRETLINKGFVEIQTPKIISAAS 228
>sp|P15178|SYD_RAT Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 501
Score = 95.5 bits (236), Expect = 3e-20
Identities = 50/100 (50%), Positives = 69/100 (69%), Gaps = 3/100 (3%)
Frame = +3
Query: 6 SCSQSDVEIQIESLKVVSRCKSRLPLQIEDATRPE---NDNNLAKVNLDTRLDNRVLELR 176
SC+Q DVE+ ++ + V+S + RLPLQ++DA RPE ++ A VN DTRLDNR+++LR
Sbjct: 129 SCTQQDVELHVQKIYVISLAEPRLPLQLDDAIRPEVEGEEDGRATVNQDTRLDNRIIDLR 188
Query: 177 TVTNQAIMTLKGGVFMNFCNYLTSRGFVPIFCPSIISAAS 296
T T+QAI L+ G+ F L ++GFV I P IISAAS
Sbjct: 189 TSTSQAIFHLQSGICHLFRETLINKGFVEIQTPKIISAAS 228
>sp|P04802|SYDC_YEAST Aspartyl-tRNA synthetase, cytoplasmic (Aspartate--tRNA ligase)
(AspRS)
Length = 557
Score = 74.7 bits (182), Expect = 6e-14
Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 3/101 (2%)
Frame = +3
Query: 3 ESCSQSDVEIQIESLKVVSRCKSRLPLQIEDATRPENDNNLAK---VNLDTRLDNRVLEL 173
+S + ++EI I + +S LP+ +EDA+R E + A VNLDTRLD RV++L
Sbjct: 180 KSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDL 239
Query: 174 RTVTNQAIMTLKGGVFMNFCNYLTSRGFVPIFCPSIISAAS 296
RTVTNQAI ++ GV F YL ++ F + P ++ A S
Sbjct: 240 RTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPS 280
>sp|O58776|SYD_PYRHO Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 438
Score = 55.8 bits (133), Expect = 3e-08
Identities = 33/90 (36%), Positives = 46/90 (51%)
Frame = +3
Query: 27 EIQIESLKVVSRCKSRLPLQIEDATRPENDNNLAKVNLDTRLDNRVLELRTVTNQAIMTL 206
E+ E L+V+SR K+ LPL + K LDTRLDNR ++LR AI +
Sbjct: 89 EVIPEKLEVISRAKTPLPL---------DPTGKVKAELDTRLDNRFMDLRNPKVMAIFKI 139
Query: 207 KGGVFMNFCNYLTSRGFVPIFCPSIISAAS 296
+ VF + S GF+ I P II+ A+
Sbjct: 140 RSSVFRAVREFFYSEGFIEIHTPKIIATAT 169
>sp|Q979P6|SYD_THEVO Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 428
Score = 53.1 bits (126), Expect = 2e-07
Identities = 29/98 (29%), Positives = 55/98 (56%)
Frame = +3
Query: 3 ESCSQSDVEIQIESLKVVSRCKSRLPLQIEDATRPENDNNLAKVNLDTRLDNRVLELRTV 182
+S S+S +E+ ES++V++R + LPL + D + + L+TRL+NR ++LR
Sbjct: 77 KSVSKSGLEVSGESVEVLNRSERPLPLPVIDPVQAD---------LETRLNNRFIDLRKR 127
Query: 183 TNQAIMTLKGGVFMNFCNYLTSRGFVPIFCPSIISAAS 296
+I + + +L S+GF+ + P I++AA+
Sbjct: 128 DVSSIFNAESSILWGIREFLHSQGFIEVHTPKIVAAAT 165
>sp|O29342|SYD_ARCFU Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 430
Score = 53.1 bits (126), Expect = 2e-07
Identities = 31/98 (31%), Positives = 52/98 (53%)
Frame = +3
Query: 3 ESCSQSDVEIQIESLKVVSRCKSRLPLQIEDATRPENDNNLAKVNLDTRLDNRVLELRTV 182
E + VEI ES++V++ + LPL++ + E LDTRLD+R ++LR
Sbjct: 79 EEKAPGGVEIIPESIEVLNEADAPLPLEVTEKVPAE---------LDTRLDHRFMDLRRP 129
Query: 183 TNQAIMTLKGGVFMNFCNYLTSRGFVPIFCPSIISAAS 296
QAI ++ V + +L+ GF+ + P I+S A+
Sbjct: 130 RVQAIFRIRHQVMQSVREFLSEEGFIEVHTPKIVSTAT 167
>sp|Q980V3|SYD_SULSO Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 429
Score = 52.8 bits (125), Expect = 2e-07
Identities = 28/91 (30%), Positives = 50/91 (54%)
Frame = +3
Query: 24 VEIQIESLKVVSRCKSRLPLQIEDATRPENDNNLAKVNLDTRLDNRVLELRTVTNQAIMT 203
VE+ + ++++S +S LPL + K ++DTRL R+L+LR + QA++
Sbjct: 85 VEVHAKDIEILSYARSPLPLDV---------TGKVKADIDTRLRERLLDLRRLEMQAVLK 135
Query: 204 LKGGVFMNFCNYLTSRGFVPIFCPSIISAAS 296
++ +F L GFV +F P II++A+
Sbjct: 136 IQSVAVKSFRETLYKHGFVEVFTPKIIASAT 166
>sp|Q976I3|SYD_SULTO Aspartyl-tRNA synthetase (Aspartate--tRNA ligase) (AspRS)
Length = 429
Score = 52.4 bits (124), Expect = 3e-07
Identities = 29/91 (31%), Positives = 49/91 (53%)
Frame = +3
Query: 24 VEIQIESLKVVSRCKSRLPLQIEDATRPENDNNLAKVNLDTRLDNRVLELRTVTNQAIMT 203
+E+ E + ++S+ K+ LPL + + K ++DTRL RVL+LR QA++
Sbjct: 85 IELHAEEITLLSKAKAPLPLDV---------SGKVKADIDTRLRERVLDLRRQEMQAVIK 135
Query: 204 LKGGVFMNFCNYLTSRGFVPIFCPSIISAAS 296
++ F L GF+ IF P II++A+
Sbjct: 136 IQSLALKAFRETLYKEGFIEIFTPKIIASAT 166
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,345,509
Number of Sequences: 369166
Number of extensions: 490523
Number of successful extensions: 1523
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1510
length of database: 68,354,980
effective HSP length: 68
effective length of database: 55,793,000
effective search space used: 1673790000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)