Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_B24
(554 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P45385|IGA3_HAEIN Immunoglobulin A1 protease precursor (... 33 0.61
sp|P42782|IGA1_HAEIN Immunoglobulin A1 protease precursor (... 33 0.61
sp|Q10059|CDC12_SCHPO Cell division control protein 12 32 1.4
sp|P29074|PTN4_HUMAN Tyrosine-protein phosphatase, non-rece... 31 1.8
sp|Q97R30|HEMH_STRPN Ferrochelatase (Protoheme ferro-lyase)... 31 1.8
sp|Q8DQ04|HEMH_STRR6 Ferrochelatase (Protoheme ferro-lyase)... 31 2.3
sp|P75255|Y523_MYCPN Hypothetical lipoprotein MG348 homolog... 30 4.0
sp|Q9NB71|HIW_DROME Ubiquitin ligase protein highwire (Pam/... 30 4.0
sp|P34288|GAP_CAEEL GTPase-activating protein GAP (CeGAP) 30 5.2
sp|Q10491|YDG1_SCHPO Hypothetical protein C26F1.01 in chrom... 30 5.2
>sp|P45385|IGA3_HAEIN Immunoglobulin A1 protease precursor (IGA1 protease)
Length = 1545
Score = 32.7 bits (73), Expect = 0.61
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Frame = +2
Query: 38 DELPAPDTTKNILAKFRDLQTGGNSNV---TQTISMEPSDELPAPNTTKNLMERFSALGQ 208
+E A +TT A+ R++ SNV TQT + S T E + +
Sbjct: 1058 NEQDATETT----AQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKE 1113
Query: 209 EKSEGKCKPKIDIPRYTNGHSNGTSENQPVELPSNVVRANDPSHDDRPEQGITKNLVNRF 388
EK++ + + ++P+ T+ S +++ V+ + R NDP+ + + Q T +
Sbjct: 1114 EKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTE 1173
Query: 389 REMEGSSNN 415
+ + +S+N
Sbjct: 1174 QPAKETSSN 1182
>sp|P42782|IGA1_HAEIN Immunoglobulin A1 protease precursor (IGA1 protease)
Length = 1541
Score = 32.7 bits (73), Expect = 0.61
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 3/129 (2%)
Frame = +2
Query: 38 DELPAPDTTKNILAKFRDLQTGGNSNV---TQTISMEPSDELPAPNTTKNLMERFSALGQ 208
+E A +TT A+ R++ SNV TQT + S T E + +
Sbjct: 1054 NEQDATETT----AQNREVAKEAKSNVKANTQTNEVAQSGSETKETQTTETKETATVEKE 1109
Query: 209 EKSEGKCKPKIDIPRYTNGHSNGTSENQPVELPSNVVRANDPSHDDRPEQGITKNLVNRF 388
EK++ + + ++P+ T+ S +++ V+ + R NDP+ + + Q T +
Sbjct: 1110 EKAKVETEKTQEVPKVTSQVSPKQEQSETVQPQAEPARENDPTVNIKEPQSQTNTTADTE 1169
Query: 389 REMEGSSNN 415
+ + +S+N
Sbjct: 1170 QPAKETSSN 1178
>sp|Q10059|CDC12_SCHPO Cell division control protein 12
Length = 1841
Score = 31.6 bits (70), Expect = 1.4
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Frame = +2
Query: 44 LPAPDTTKNILAKFRDLQTGGNSNVTQTISMEPSDELPAPNTTKNLMERFSALGQEKSEG 223
L P KNI+ D+Q + + S +P + P P+ + +R +++
Sbjct: 129 LKGPRLPKNIIKSSEDVQIAPVTPPVHSRSFDPLPKPPVPSVPVSKTKR-------RTKH 181
Query: 224 KCKPKIDIPRYTNGHS---NGTSENQPVELPSNVVRANDPS 337
K P +++P TN S T++ Q L S +RA P+
Sbjct: 182 KLAPVVEVPEITNEVSPKFTSTNDEQVYRLRS--IRAGSPN 220
>sp|P29074|PTN4_HUMAN Tyrosine-protein phosphatase, non-receptor type 4 (Protein-tyrosine
phosphatase MEG1) (PTPase-MEG1) (MEG)
Length = 926
Score = 31.2 bits (69), Expect = 1.8
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +2
Query: 26 DVLTDELPAPDTTKNILAKFRDLQTGGNSNVTQTISMEPSDELPAPNTTKNLMERFSALG 205
D+LT LP P T +LA F G+ + ++ +S SD PN ++ + + L
Sbjct: 133 DILTGRLPCPSNTAALLASFAVQSELGDYDQSENLSGYLSDYSFIPNQPQDFEKEIAKLH 192
Query: 206 QE 211
Q+
Sbjct: 193 QQ 194
>sp|Q97R30|HEMH_STRPN Ferrochelatase (Protoheme ferro-lyase) (Heme synthetase)
Length = 364
Score = 31.2 bits (69), Expect = 1.8
Identities = 20/58 (34%), Positives = 30/58 (51%)
Frame = +2
Query: 38 DELPAPDTTKNILAKFRDLQTGGNSNVTQTISMEPSDELPAPNTTKNLMERFSALGQE 211
DEL D TKNILA+ +DLQ V + I + + + P K ++E+ L +E
Sbjct: 309 DELVPSDETKNILAESQDLQM--PEFVKKLIEKKGRENVKMPYLIKKMLEKAGKLPKE 364
>sp|Q8DQ04|HEMH_STRR6 Ferrochelatase (Protoheme ferro-lyase) (Heme synthetase)
Length = 364
Score = 30.8 bits (68), Expect = 2.3
Identities = 20/58 (34%), Positives = 29/58 (50%)
Frame = +2
Query: 38 DELPAPDTTKNILAKFRDLQTGGNSNVTQTISMEPSDELPAPNTTKNLMERFSALGQE 211
DEL D TKNILA+ DLQ V + I + + + P K ++E+ L +E
Sbjct: 309 DELVPSDETKNILAESEDLQM--PEFVKKLIEKKGRENVKMPYLIKKMLEKAGKLPKE 364
>sp|P75255|Y523_MYCPN Hypothetical lipoprotein MG348 homolog precursor (G12_orf305)
Length = 305
Score = 30.0 bits (66), Expect = 4.0
Identities = 29/109 (26%), Positives = 53/109 (48%)
Frame = -3
Query: 354 SGLSSWLGSFARTTLLGSSTG*FSDVPLE*PFVYRGMSIFGLHFPSDFSWPRAEKRSIKF 175
S +S SF+ LLGS S ++ P V+R +S + D+S E ++++
Sbjct: 6 SSISKKKVSFSTLLLLGSGIVLSSCSNIDKPNVFRTLSQQSVENKVDYSKLPKENKTVR- 64
Query: 174 FVVFGAGSSSDGSMLIVCVTLLLPPVCKSLNLAKIFFVVSGAGNSSVKT 28
+VFG +DG+ ++V T + ++I F ++G+ N +V T
Sbjct: 65 NLVFGTAEYNDGNYVLVVTT--------ETDSSQINF-LNGSNNQAVST 104
>sp|Q9NB71|HIW_DROME Ubiquitin ligase protein highwire (Pam/highwire/rpm-1 protein)
Length = 5233
Score = 30.0 bits (66), Expect = 4.0
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 7/118 (5%)
Frame = +2
Query: 11 NIDISDVLTDELPAPDTTKNILAKFRDLQTGGNS-NVTQTISMEPS------DELPAPNT 169
N+D++ + PA +T ++LA T G N + SM + ++LP +
Sbjct: 1226 NLDVAVTPVADSPAHASTSSLLAALTGTATAGVPINEQMSRSMHEARNQIFEEQLPEVGS 1285
Query: 170 TKNLMERFSALGQEKSEGKCKPKIDIPRYTNGHSNGTSENQPVELPSNVVRANDPSHD 343
+ +A G S G +PR G GTS +P+ P + DP+++
Sbjct: 1286 SA-AAAAVAAPGTPVSAGS------VPRSRRGGKQGTSSPEPIPSPPQLAFTMDPTYN 1336
>sp|P34288|GAP_CAEEL GTPase-activating protein GAP (CeGAP)
Length = 1317
Score = 29.6 bits (65), Expect = 5.2
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +2
Query: 257 TNGHSNGTSENQPVELPSNVVRANDPSHDDRPE-QGITKNLVNRFREMEGSSNN 415
+NG T E+Q V S + D HDD E Q I++ + R R S N
Sbjct: 18 SNGGGTNTEEDQTVSATSKEDPSEDTGHDDPEETQEISETPIRRSRNRNASLRN 71
>sp|Q10491|YDG1_SCHPO Hypothetical protein C26F1.01 in chromosome I
Length = 928
Score = 29.6 bits (65), Expect = 5.2
Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Frame = +2
Query: 137 EPSDELPAPNTTKNLMERFSALGQEKSEGKCKPKI----DIPRYTNGHSNGTSE---NQP 295
+PS LP+ K+ + SAL ++ + K KPK+ D P+ ++ HS +S +
Sbjct: 24 KPSPPLPSRRKGKSALR--SALEKKNRKSKSKPKVTITSDTPKVSSQHSPVSSAYTGDST 81
Query: 296 VELPSNVVRANDPSHDDRPEQGITKNLVNRFREMEGSSNN*CS 424
+L S ++ ++ + + R+R + SS+ CS
Sbjct: 82 TDLDSKSGHSSSQKLSNKVSSALKLTIPKRWRSSKSSSSQ-CS 123
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,933,555
Number of Sequences: 369166
Number of extensions: 1384989
Number of successful extensions: 3622
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3620
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3931403200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)