Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_B22-2
(258 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23579|RPOB_EUGGR DNA-directed RNA polymerase beta chain... 28 5.0
sp|P38977|ANTA_HYDMA Antistasin precursor (ATS) (Blood coag... 28 6.5
>sp|P23579|RPOB_EUGGR DNA-directed RNA polymerase beta chain (PEP) (Plastid-encoded RNA
polymerase beta subunit) (RNA polymerase beta subunit)
Length = 1082
Score = 28.5 bits (62), Expect = 5.0
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Frame = -1
Query: 141 NNKMFNKTNQYFNTMSCLH--GRKSFKLI 61
N + FNK +FN + CL+ +K+FKLI
Sbjct: 600 NIEFFNKNYSFFNLLGCLNEISQKNFKLI 628
>sp|P38977|ANTA_HYDMA Antistasin precursor (ATS) (Blood coagulation factor Xa/proclotting
enzyme inhibitor)
Length = 220
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 149 GCKTIKCLIKPINISTRC 96
GCKT KC KP+ +S C
Sbjct: 202 GCKTCKCNSKPLKLSLHC 219
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,400,801
Number of Sequences: 369166
Number of extensions: 359322
Number of successful extensions: 697
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 68,354,980
effective HSP length: 56
effective length of database: 58,009,820
effective search space used: 1682284780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)