Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_026_B22-2 (258 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P23579|RPOB_EUGGR DNA-directed RNA polymerase beta chain... 28 5.0 sp|P38977|ANTA_HYDMA Antistasin precursor (ATS) (Blood coag... 28 6.5
>sp|P23579|RPOB_EUGGR DNA-directed RNA polymerase beta chain (PEP) (Plastid-encoded RNA polymerase beta subunit) (RNA polymerase beta subunit) Length = 1082 Score = 28.5 bits (62), Expect = 5.0 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%) Frame = -1 Query: 141 NNKMFNKTNQYFNTMSCLH--GRKSFKLI 61 N + FNK +FN + CL+ +K+FKLI Sbjct: 600 NIEFFNKNYSFFNLLGCLNEISQKNFKLI 628
>sp|P38977|ANTA_HYDMA Antistasin precursor (ATS) (Blood coagulation factor Xa/proclotting enzyme inhibitor) Length = 220 Score = 28.1 bits (61), Expect = 6.5 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -2 Query: 149 GCKTIKCLIKPINISTRC 96 GCKT KC KP+ +S C Sbjct: 202 GCKTCKCNSKPLKLSLHC 219
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 25,400,801 Number of Sequences: 369166 Number of extensions: 359322 Number of successful extensions: 697 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 691 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 697 length of database: 68,354,980 effective HSP length: 56 effective length of database: 58,009,820 effective search space used: 1682284780 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)