Planarian EST Database


Dr_sW_026_B22-2

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_026_B22-2
         (258 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P23579|RPOB_EUGGR  DNA-directed RNA polymerase beta chain...    28   5.0  
sp|P38977|ANTA_HYDMA  Antistasin precursor (ATS) (Blood coag...    28   6.5  
>sp|P23579|RPOB_EUGGR DNA-directed RNA polymerase beta chain (PEP) (Plastid-encoded RNA
           polymerase beta subunit) (RNA polymerase beta subunit)
          Length = 1082

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -1

Query: 141 NNKMFNKTNQYFNTMSCLH--GRKSFKLI 61
           N + FNK   +FN + CL+   +K+FKLI
Sbjct: 600 NIEFFNKNYSFFNLLGCLNEISQKNFKLI 628
>sp|P38977|ANTA_HYDMA Antistasin precursor (ATS) (Blood coagulation factor Xa/proclotting
           enzyme inhibitor)
          Length = 220

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 149 GCKTIKCLIKPINISTRC 96
           GCKT KC  KP+ +S  C
Sbjct: 202 GCKTCKCNSKPLKLSLHC 219
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,400,801
Number of Sequences: 369166
Number of extensions: 359322
Number of successful extensions: 697
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 68,354,980
effective HSP length: 56
effective length of database: 58,009,820
effective search space used: 1682284780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)