Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_B22-1
(346 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q68XD1|EFP_RICTY Elongation factor P (EF-P) 28 5.0
sp|Q9ZDT7|EFP_RICPR Elongation factor P (EF-P) 28 5.0
>sp|Q68XD1|EFP_RICTY Elongation factor P (EF-P)
Length = 188
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 219 NLIHMDTIHTDMINTINMVKAINTVMIPMVTTNMI 115
NL+ MDT H D IN+ K I +P +T NMI
Sbjct: 81 NLVLMDTKHFDQ---INVPKEILEAKLPFLTENMI 112
>sp|Q9ZDT7|EFP_RICPR Elongation factor P (EF-P)
Length = 188
Score = 28.5 bits (62), Expect = 5.0
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -2
Query: 219 NLIHMDTIHTDMINTINMVKAINTVMIPMVTTNMI 115
NL+ MDT H D IN+ K I +P +T NMI
Sbjct: 81 NLVLMDTKHFDQ---INVPKEILEAKLPFLTENMI 112
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,322,304
Number of Sequences: 369166
Number of extensions: 137643
Number of successful extensions: 384
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 68,354,980
effective HSP length: 82
effective length of database: 53,206,710
effective search space used: 1702614720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)