Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_B21
(850 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9WUL7|ARL3_MOUSE ADP-ribosylation factor-like protein 3 273 3e-73
sp|P36405|ARL3_HUMAN ADP-ribosylation factor-like protein 3 273 3e-73
sp|P37996|ARL3_RAT ADP-ribosylation factor-like protein 3 (... 272 1e-72
sp|O45379|ARL3_CAEEL ADP-ribosylation factor-like protein 3 223 4e-58
sp|Q9D0J4|ARL2_MOUSE ADP-ribosylation factor-like protein 2 206 9e-53
sp|O08697|ARL2_RAT ADP-ribosylation factor-like protein 2 206 9e-53
sp|P36404|ARL2_HUMAN ADP-ribosylation factor-like protein 2 205 1e-52
sp|Q9ZPX1|ARF5_ARATH Probable ADP-ribosylation factor At2g1... 182 1e-45
sp|Q06849|ARL2_DROME GTP-binding ADP-ribosylation factor ho... 177 3e-44
sp|Q19705|ARFM_CAEEL GTP-binding ADP-ribosylation factor ho... 177 3e-44
>sp|Q9WUL7|ARL3_MOUSE ADP-ribosylation factor-like protein 3
Length = 182
Score = 273 bits (699), Expect = 3e-73
Identities = 131/181 (72%), Positives = 155/181 (85%)
Frame = +2
Query: 17 MGLLDLLRKMKTKTGQEVRILTLGLDNAGKTTLLKSLASEEINQITPTQGFNVKTVQTKG 196
MGLL +LRK+K+ QEVRIL LGLDNAGKTTLLK LASE+I+ ITPTQGFN+K+VQ++G
Sbjct: 1 MGLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQG 60
Query: 197 FKLNVWDIGGQRRIRPYWRNYFENTDVLIYVIDSADKKRFNETSEELNELLMESKLTGVP 376
FKLNVWDIGGQR+IRPYWR+YFENTD+LIYVIDSAD+KRF ET +EL ELL E KL+ VP
Sbjct: 61 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP 120
Query: 377 LLIYANKQDLMNAAPASEISTGLNLLSIRDREWQIQPCSAQTGEGVQQGLEWALSSIEGR 556
+LI+ANKQDL+ AAPASEI+ GLNL +IRDR WQIQ CSA TGEGVQ G+ W ++ +
Sbjct: 121 VLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180
Query: 557 K 559
K
Sbjct: 181 K 181
>sp|P36405|ARL3_HUMAN ADP-ribosylation factor-like protein 3
Length = 182
Score = 273 bits (699), Expect = 3e-73
Identities = 131/181 (72%), Positives = 155/181 (85%)
Frame = +2
Query: 17 MGLLDLLRKMKTKTGQEVRILTLGLDNAGKTTLLKSLASEEINQITPTQGFNVKTVQTKG 196
MGLL +LRK+K+ QEVRIL LGLDNAGKTTLLK LASE+I+ ITPTQGFN+K+VQ++G
Sbjct: 1 MGLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQG 60
Query: 197 FKLNVWDIGGQRRIRPYWRNYFENTDVLIYVIDSADKKRFNETSEELNELLMESKLTGVP 376
FKLNVWDIGGQR+IRPYW+NYFENTD+LIYVIDSAD+KRF ET +EL ELL E KL+ VP
Sbjct: 61 FKLNVWDIGGQRKIRPYWKNYFENTDILIYVIDSADRKRFEETGQELAELLEEEKLSCVP 120
Query: 377 LLIYANKQDLMNAAPASEISTGLNLLSIRDREWQIQPCSAQTGEGVQQGLEWALSSIEGR 556
+LI+ANKQDL+ AAPASEI+ GLNL +IRDR WQIQ CSA TGEGVQ G+ W ++ +
Sbjct: 121 VLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180
Query: 557 K 559
K
Sbjct: 181 K 181
>sp|P37996|ARL3_RAT ADP-ribosylation factor-like protein 3 (ARD3)
Length = 182
Score = 272 bits (695), Expect = 1e-72
Identities = 129/181 (71%), Positives = 155/181 (85%)
Frame = +2
Query: 17 MGLLDLLRKMKTKTGQEVRILTLGLDNAGKTTLLKSLASEEINQITPTQGFNVKTVQTKG 196
MGLL +LRK+K+ QEVRIL LGLDNAGKTTLLK LASE+I+ ITPTQGFN+K+VQ++G
Sbjct: 1 MGLLSILRKLKSAPDQEVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQG 60
Query: 197 FKLNVWDIGGQRRIRPYWRNYFENTDVLIYVIDSADKKRFNETSEELNELLMESKLTGVP 376
FKLNVWDIGGQR+IRPYWR+YFENTD+LIYVIDSAD+KRF ET +EL ELL E KL+ VP
Sbjct: 61 FKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVP 120
Query: 377 LLIYANKQDLMNAAPASEISTGLNLLSIRDREWQIQPCSAQTGEGVQQGLEWALSSIEGR 556
+L++ANKQDL+ AAPA+EI+ GLNL +IRDR WQIQ CSA TGEGVQ G+ W ++ +
Sbjct: 121 VLVFANKQDLLTAAPAAEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK 180
Query: 557 K 559
K
Sbjct: 181 K 181
>sp|O45379|ARL3_CAEEL ADP-ribosylation factor-like protein 3
Length = 184
Score = 223 bits (569), Expect = 4e-58
Identities = 108/179 (60%), Positives = 137/179 (76%), Gaps = 1/179 (0%)
Frame = +2
Query: 17 MGLLDLLRKMKTKTGQEVRILTLGLDNAGKTTLLKSLASEEINQITPTQGFNVKTVQTKG 196
MGL+D+L+ K+ +G+E+RIL LGLDNAGKTT+LK L+SE++ +TPT+GFNVKTV G
Sbjct: 1 MGLIDVLKSFKSPSGREIRILLLGLDNAGKTTILKQLSSEDVQHVTPTKGFNVKTVAAMG 60
Query: 197 -FKLNVWDIGGQRRIRPYWRNYFENTDVLIYVIDSADKKRFNETSEELNELLMESKLTGV 373
+LNVWDIGGQR IRPYW NY+EN D LI+VIDS DKKRF+E + EL ELL E KL V
Sbjct: 61 DIRLNVWDIGGQRSIRPYWSNYYENIDTLIFVIDSNDKKRFDEMNIELGELLDEEKLRKV 120
Query: 374 PLLIYANKQDLMNAAPASEISTGLNLLSIRDREWQIQPCSAQTGEGVQQGLEWALSSIE 550
P+LI+ANKQDL+ AA + EI+ LNL +RDR W IQ CSA EG+ G+ W S+++
Sbjct: 121 PVLIFANKQDLVTAASSEEITRKLNLDLLRDRTWHIQACSALKNEGINDGITWVASNLK 179
>sp|Q9D0J4|ARL2_MOUSE ADP-ribosylation factor-like protein 2
Length = 184
Score = 206 bits (523), Expect = 9e-53
Identities = 98/180 (54%), Positives = 130/180 (72%)
Frame = +2
Query: 17 MGLLDLLRKMKTKTGQEVRILTLGLDNAGKTTLLKSLASEEINQITPTQGFNVKTVQTKG 196
MGLL +L+KMK K +E+R+L LGLDNAGKTT+LK E+++ I+PT GFN+KT++ +G
Sbjct: 1 MGLLTILKKMKQKE-RELRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG 59
Query: 197 FKLNVWDIGGQRRIRPYWRNYFENTDVLIYVIDSADKKRFNETSEELNELLMESKLTGVP 376
FKLN+WD+GGQ+ +R YWRNYFE+TD LI+V+DSAD++R + EL LL+E +L G
Sbjct: 60 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 119
Query: 377 LLIYANKQDLMNAAPASEISTGLNLLSIRDREWQIQPCSAQTGEGVQQGLEWALSSIEGR 556
LLI+ANKQDL A + I L L SIR W+IQ CSA TGE + G++W L I R
Sbjct: 120 LLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 179
>sp|O08697|ARL2_RAT ADP-ribosylation factor-like protein 2
Length = 184
Score = 206 bits (523), Expect = 9e-53
Identities = 98/180 (54%), Positives = 130/180 (72%)
Frame = +2
Query: 17 MGLLDLLRKMKTKTGQEVRILTLGLDNAGKTTLLKSLASEEINQITPTQGFNVKTVQTKG 196
MGLL +L+KMK K ++VR+L LGLDNAGKTT+LK E+++ I+PT GFN+KT++ +G
Sbjct: 1 MGLLTILKKMKQKE-RDVRLLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRG 59
Query: 197 FKLNVWDIGGQRRIRPYWRNYFENTDVLIYVIDSADKKRFNETSEELNELLMESKLTGVP 376
FKLN+WD+GGQ+ +R YWRNYFE+TD LI+V+DSAD++R + EL LL+E +L G
Sbjct: 60 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 119
Query: 377 LLIYANKQDLMNAAPASEISTGLNLLSIRDREWQIQPCSAQTGEGVQQGLEWALSSIEGR 556
LLI+ANKQDL A + I L L SIR W+IQ CSA TGE + G++W L I R
Sbjct: 120 LLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISSR 179
>sp|P36404|ARL2_HUMAN ADP-ribosylation factor-like protein 2
Length = 184
Score = 205 bits (521), Expect = 1e-52
Identities = 99/180 (55%), Positives = 130/180 (72%)
Frame = +2
Query: 17 MGLLDLLRKMKTKTGQEVRILTLGLDNAGKTTLLKSLASEEINQITPTQGFNVKTVQTKG 196
MGLL +L+KMK K +E+R+L LGLDNAGKTT+LK E+I+ I+PT GFN+KT++ +G
Sbjct: 1 MGLLTILKKMKQKE-RELRLLMLGLDNAGKTTILKKFNGEDIDTISPTLGFNIKTLEHRG 59
Query: 197 FKLNVWDIGGQRRIRPYWRNYFENTDVLIYVIDSADKKRFNETSEELNELLMESKLTGVP 376
FKLN+WD+GGQ+ +R YWRNYFE+TD LI+V+DSAD++R + EL LL+E +L G
Sbjct: 60 FKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGAT 119
Query: 377 LLIYANKQDLMNAAPASEISTGLNLLSIRDREWQIQPCSAQTGEGVQQGLEWALSSIEGR 556
LLI+ANKQDL A ++ I L L SIR W IQ CSA TGE + G++W L I R
Sbjct: 120 LLIFANKQDLPGALSSNAIREALELDSIRSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179
>sp|Q9ZPX1|ARF5_ARATH Probable ADP-ribosylation factor At2g18390
Length = 185
Score = 182 bits (462), Expect = 1e-45
Identities = 89/181 (49%), Positives = 126/181 (69%), Gaps = 1/181 (0%)
Frame = +2
Query: 17 MGLLDLLRKMKTKTGQEVRILTLGLDNAGKTTLLKSLASEEINQITPTQGFNVKTVQTKG 196
MGLL ++RK+K K +E+RIL +GLDN+GKTT++ + E+ + I+PT GFN+KT+ +
Sbjct: 1 MGLLSIIRKIKKKE-KEMRILMVGLDNSGKTTIVLKINGEDTSVISPTLGFNIKTIIYQK 59
Query: 197 FKLNVWDIGGQRRIRPYWRNYFENTDVLIYVIDSADKKRFNETSEELNELLMESKLTGVP 376
+ LN+WD+GGQ+ IR YWRNYFE TD L++V+DS+D +R ++ EL+ LL E +L G
Sbjct: 60 YTLNIWDVGGQKTIRSYWRNYFEQTDGLVWVVDSSDLRRLDDCKMELDNLLKEERLAGSS 119
Query: 377 LLIYANKQDLMNAAPASEISTGLNLLSI-RDREWQIQPCSAQTGEGVQQGLEWALSSIEG 553
LLI ANKQD+ A EI LNL S+ + R W+I CSA TGEG+ +G +W + I
Sbjct: 120 LLILANKQDIQGALTPDEIGKVLNLESMDKSRHWKIVGCSAYTGEGLLEGFDWLVQDIAS 179
Query: 554 R 556
R
Sbjct: 180 R 180
>sp|Q06849|ARL2_DROME GTP-binding ADP-ribosylation factor homolog 2 protein
Length = 184
Score = 177 bits (450), Expect = 3e-44
Identities = 87/180 (48%), Positives = 120/180 (66%)
Frame = +2
Query: 17 MGLLDLLRKMKTKTGQEVRILTLGLDNAGKTTLLKSLASEEINQITPTQGFNVKTVQTKG 196
MG L +L+KM+ K +E+RIL LGLDNAGKTT+LK E I+ I+PT GFN+KT++ G
Sbjct: 1 MGFLTVLKKMRQKE-REMRILLLGLDNAGKTTILKRFNGEPIDTISPTLGFNIKTLEHNG 59
Query: 197 FKLNVWDIGGQRRIRPYWRNYFENTDVLIYVIDSADKKRFNETSEELNELLMESKLTGVP 376
+ LN+WD+GGQ+ +R YWRNYFE+TD L++V+DSAD+ R +EL LL E +L G
Sbjct: 60 YTLNMWDVGGQKSLRSYWRNYFESTDGLVWVVDSADRMRLESCGQELQVLLQEERLAGAT 119
Query: 377 LLIYANKQDLMNAAPASEISTGLNLLSIRDREWQIQPCSAQTGEGVQQGLEWALSSIEGR 556
LL+ NKQDL A ++EI L+L I W + SA TGE + ++W ++ I R
Sbjct: 120 LLVLCNKQDLPGALSSNEIKEILHLEDITTHHWLVAGVSAVTGEKLLSSMDWLIADIAKR 179
>sp|Q19705|ARFM_CAEEL GTP-binding ADP-ribosylation factor homolog protein evl-20
Length = 184
Score = 177 bits (449), Expect = 3e-44
Identities = 86/180 (47%), Positives = 121/180 (67%)
Frame = +2
Query: 17 MGLLDLLRKMKTKTGQEVRILTLGLDNAGKTTLLKSLASEEINQITPTQGFNVKTVQTKG 196
MG L +LRK + + +E+RIL LGLDNAGKTTL+K E + I PT GF++KTV K
Sbjct: 1 MGFLKILRKQRARE-REMRILILGLDNAGKTTLMKKFLDEPTDTIEPTLGFDIKTVHFKD 59
Query: 197 FKLNVWDIGGQRRIRPYWRNYFENTDVLIYVIDSADKKRFNETSEELNELLMESKLTGVP 376
F+LN+WD+GGQ+ +R YW+NYFE+TD LI+V+DS+D++R + SEEL +LL E +L G
Sbjct: 60 FQLNLWDVGGQKSLRSYWKNYFESTDALIWVVDSSDRERLLQCSEELKKLLGEERLAGAS 119
Query: 377 LLIYANKQDLMNAAPASEISTGLNLLSIRDREWQIQPCSAQTGEGVQQGLEWALSSIEGR 556
LL+ ANK DL A + I+ L+L SI+ W+I C A +G+ + Q + W + R
Sbjct: 120 LLVLANKSDLPGAIDVNSIAQVLDLHSIKSHHWKIFSCCALSGDRLVQAMTWLCDDVGSR 179
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,324,008
Number of Sequences: 369166
Number of extensions: 1589158
Number of successful extensions: 5321
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5260
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8341863645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)