Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_B18
(388 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9QZA6|CD151_RAT Platelet endothelial tetraspan antigen ... 52 5e-07
sp|Q9XSK2|CD63_BOVIN CD63 antigen 51 7e-07
sp|O35566|C151_MOUSE Platelet-endothelial tetraspan antigen... 50 2e-06
sp|P48509|CD151_HUMAN Platelet-endothelial tetraspan antige... 49 3e-06
sp|O43657|TSN6_HUMAN Tetraspanin-6 (Tspan-6) (Transmembrane... 48 6e-06
sp|P08962|CD63_HUMAN CD63 antigen (Melanoma-associated anti... 48 8e-06
sp|O70401|TSN6_MOUSE Tetraspanin-6 (Tspan-6) (Transmembrane... 47 1e-05
sp|Q28709|CD63_RABIT CD63 antigen 47 1e-05
sp|P28648|CD63_RAT CD63 antigen (AD1 antigen) 47 2e-05
sp|O60637|TSN3_HUMAN Tetraspanin-3 (Tspan-3) (Transmembrane... 44 1e-04
>sp|Q9QZA6|CD151_RAT Platelet endothelial tetraspan antigen 3 (CD151 antigen)
Length = 253
Score = 51.6 bits (122), Expect = 5e-07
Identities = 22/91 (24%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Frame = +3
Query: 3 GATKMTDWLQSDWYQNSKNKTQPFPSSCCDPITSPCWELGYDKKAF--TDGCIPKMFSYA 176
G+ DW S+W ++ + ++ P SCC + + C + + + GCI K+ S+
Sbjct: 157 GSNNSRDWRDSEWIRSGEADSRVVPDSCCKTVVTGCGKREHASNIYKVEGGCITKLESFI 216
Query: 177 KTYFPLVIGITLGIAFFEIFVVVCAFCLCRN 269
+ + ++ + +GIA ++F ++ CL R+
Sbjct: 217 QEHLRVIGAVGIGIACVQVFGMIFTCCLYRS 247
>sp|Q9XSK2|CD63_BOVIN CD63 antigen
Length = 237
Score = 51.2 bits (121), Expect = 7e-07
Identities = 30/89 (33%), Positives = 42/89 (47%)
Frame = +3
Query: 3 GATKMTDWLQSDWYQNSKNKTQPFPSSCCDPITSPCWELGYDKKAFTDGCIPKMFSYAKT 182
GA TDW + T P SCC IT C K T+GC+ K+ ++ +
Sbjct: 147 GAANYTDW------EKILAVTNKVPDSCCVNITHNCGINFVVKDIHTEGCVEKIAAWLRK 200
Query: 183 YFPLVIGITLGIAFFEIFVVVCAFCLCRN 269
+V+ LGIAF EI +V A CL ++
Sbjct: 201 NVLVVVAAALGIAFVEILGIVLACCLVKS 229
>sp|O35566|C151_MOUSE Platelet-endothelial tetraspan antigen 3 (PETA-3) (GP27) (Membrane
glycoprotein SFA-1) (CD151 antigen)
Length = 253
Score = 50.1 bits (118), Expect = 2e-06
Identities = 21/91 (23%), Positives = 47/91 (51%), Gaps = 2/91 (2%)
Frame = +3
Query: 3 GATKMTDWLQSDWYQNSKNKTQPFPSSCCDPITSPCWELGYDKKAF--TDGCIPKMFSYA 176
G+ DW S+W ++ + ++ P SCC + + C + + + GCI K+ ++
Sbjct: 157 GSNNSQDWQDSEWIRSGEADSRVVPDSCCKTMVAGCGKRDHASNIYKVEGGCITKLETFI 216
Query: 177 KTYFPLVIGITLGIAFFEIFVVVCAFCLCRN 269
+ + ++ + +GIA ++F ++ CL R+
Sbjct: 217 QEHLRVIGAVGIGIACVQVFGMIFTCCLYRS 247
>sp|P48509|CD151_HUMAN Platelet-endothelial tetraspan antigen 3 (PETA-3) (GP27) (Membrane
glycoprotein SFA-1) (CD151 antigen) (Tetraspanin-24)
(Tspan-24)
Length = 253
Score = 49.3 bits (116), Expect = 3e-06
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Frame = +3
Query: 3 GATKMTDWLQSDWYQNSKNKTQPFPSSCCDPITSPCWELGYDKKAF--TDGCIPKMFSYA 176
G+ DW S+W ++ + + P SCC + + C + + + GCI K+ ++
Sbjct: 157 GSNNSQDWRDSEWIRSQEAGGRVVPDSCCKTVVALCGQRDHASNIYKVEGGCITKLETFI 216
Query: 177 KTYFPLVIGITLGIAFFEIFVVVCAFCLCRN 269
+ + ++ + +GIA ++F ++ CL R+
Sbjct: 217 QEHLRVIGAVGIGIACVQVFGMIFTCCLYRS 247
>sp|O43657|TSN6_HUMAN Tetraspanin-6 (Tspan-6) (Transmembrane 4 superfamily member 6)
(T245 protein) (Tetraspanin TM4-D) (A15 homolog)
Length = 245
Score = 48.1 bits (113), Expect = 6e-06
Identities = 26/94 (27%), Positives = 43/94 (45%)
Frame = +3
Query: 3 GATKMTDWLQSDWYQNSKNKTQPFPSSCCDPITSPCWELGYDKKAFTDGCIPKMFSYAKT 182
G T DW +++Y + FP SCC C K +GC K+ + ++
Sbjct: 155 GVTDYRDWTDTNYYSE-----KGFPKSCCK--LEDCTPQRDADKVNNEGCFIKVMTIIES 207
Query: 183 YFPLVIGITLGIAFFEIFVVVCAFCLCRNTVQHQ 284
+V GI+ G+A F++ + A+CL R +Q
Sbjct: 208 EMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQ 241
>sp|P08962|CD63_HUMAN CD63 antigen (Melanoma-associated antigen ME491)
(Lysosome-associated membrane glycoprotein 3) (LAMP-3)
(Ocular melanoma-associated antigen) (OMA81H)
(Granulophysin) (Tetraspanin-30) (Tspan-30)
Length = 238
Score = 47.8 bits (112), Expect = 8e-06
Identities = 29/89 (32%), Positives = 43/89 (48%)
Frame = +3
Query: 3 GATKMTDWLQSDWYQNSKNKTQPFPSSCCDPITSPCWELGYDKKAFTDGCIPKMFSYAKT 182
GA TDW + SKN+ P SCC +T C +K +GC+ K+ + +
Sbjct: 147 GAANYTDWEKIP--SMSKNRV---PDSCCINVTVGCGINFNEKAIHKEGCVEKIGGWLRK 201
Query: 183 YFPLVIGITLGIAFFEIFVVVCAFCLCRN 269
+V LGIAF E+ +V A CL ++
Sbjct: 202 NVLVVAAAALGIAFVEVLGIVFACCLVKS 230
>sp|O70401|TSN6_MOUSE Tetraspanin-6 (Tspan-6) (Transmembrane 4 superfamily member 6)
Length = 245
Score = 47.4 bits (111), Expect = 1e-05
Identities = 26/94 (27%), Positives = 44/94 (46%)
Frame = +3
Query: 3 GATKMTDWLQSDWYQNSKNKTQPFPSSCCDPITSPCWELGYDKKAFTDGCIPKMFSYAKT 182
G T DW +++Y + FP SCC C+ K +GC K+ + ++
Sbjct: 155 GVTNYGDWKGTNYYSETG-----FPKSCCK--LEGCYPQRDADKVNEEGCFIKVMTTIES 207
Query: 183 YFPLVIGITLGIAFFEIFVVVCAFCLCRNTVQHQ 284
+V GI+ G+A F++ + A+CL R +Q
Sbjct: 208 EMGVVAGISFGVACFQLIGIFLAYCLSRAITNNQ 241
>sp|Q28709|CD63_RABIT CD63 antigen
Length = 238
Score = 47.4 bits (111), Expect = 1e-05
Identities = 27/89 (30%), Positives = 40/89 (44%)
Frame = +3
Query: 3 GATKMTDWLQSDWYQNSKNKTQPFPSSCCDPITSPCWELGYDKKAFTDGCIPKMFSYAKT 182
GA TDW + P SCC +TS C K + +GC+ K+ + +
Sbjct: 147 GAANYTDWATIPGMTRDR-----VPDSCCVNVTSGCGVKFNVKDIYVEGCVEKIGLWLRK 201
Query: 183 YFPLVIGITLGIAFFEIFVVVCAFCLCRN 269
+V LGIAF E+ +V A CL ++
Sbjct: 202 NVLVVAAAALGIAFVEVLGIVFACCLVKS 230
>sp|P28648|CD63_RAT CD63 antigen (AD1 antigen)
Length = 238
Score = 46.6 bits (109), Expect = 2e-05
Identities = 26/89 (29%), Positives = 41/89 (46%)
Frame = +3
Query: 3 GATKMTDWLQSDWYQNSKNKTQPFPSSCCDPITSPCWELGYDKKAFTDGCIPKMFSYAKT 182
GA+ TDW + + P SCC IT C + T GC+ + ++ +
Sbjct: 147 GASNYTDWERIPGMAKDR-----VPDSCCINITVGCGNDFKESTIHTQGCVETIAAWLRK 201
Query: 183 YFPLVIGITLGIAFFEIFVVVCAFCLCRN 269
LV G LGIAF E+ ++ + CL ++
Sbjct: 202 NVLLVAGAALGIAFVEVLGIIFSCCLVKS 230
>sp|O60637|TSN3_HUMAN Tetraspanin-3 (Tspan-3) (Transmembrane 4 superfamily member 8)
(Tetraspanin TM4-A)
Length = 253
Score = 43.9 bits (102), Expect = 1e-04
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Frame = +3
Query: 3 GATKMTDWLQSDWYQNSKNKTQPFPSSCCDPITSPC-WELGYDKKAFTDGCIPKMFSYAK 179
G +DW +DW++ +KN Q P SCC S C L + + +GC + +
Sbjct: 149 GIHNYSDWENTDWFKETKN--QSVPLSCCRETASNCNGSLAHPSDLYAEGCEALVVKKLQ 206
Query: 180 TYFPLVIGITLGIAFFEIFVVVCA-FCLCRNT 272
VI L A ++ ++CA LCR +
Sbjct: 207 EIMMHVIWAALAFAAIQLLGMLCACIVLCRRS 238
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,180,285
Number of Sequences: 369166
Number of extensions: 882522
Number of successful extensions: 2252
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2247
length of database: 68,354,980
effective HSP length: 95
effective length of database: 50,805,155
effective search space used: 1676570115
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)