Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_B17
(232 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha) 153 1e-37
sp|P05303|EF12_DROME Elongation factor 1-alpha (EF-1-alpha) 153 1e-37
sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha) 152 2e-37
sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)... 152 2e-37
sp|P27634|EF1A_RHYAM Elongation factor 1-alpha (EF-1-alpha) 152 2e-37
sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha)... 152 2e-37
sp|Q01520|EF1A_PODAN Elongation factor 1-alpha (EF-1-alpha) 152 3e-37
sp|P34825|EF1A_TRIRE Elongation factor 1-alpha (EF-1-alpha) 152 3e-37
sp|Q09069|EF1A_SORMA Elongation factor 1-alpha (EF-1-alpha) 152 3e-37
sp|Q01765|EF1A_PODCU Elongation factor 1-alpha (EF-1-alpha) 152 3e-37
>sp|P29520|EF1A_BOMMO Elongation factor 1-alpha (EF-1-alpha)
Length = 463
Score = 153 bits (386), Expect = 1e-37
Identities = 72/76 (94%), Positives = 76/76 (100%)
Frame = +3
Query: 3 GSFKYAWVLDKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADC 182
GSFKYAWVLDKLKAERERGITIDIALWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADC
Sbjct: 52 GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADC 111
Query: 183 AVLVVAAGTGEFEAGI 230
AVL+VAAGTGEFEAGI
Sbjct: 112 AVLIVAAGTGEFEAGI 127
>sp|P05303|EF12_DROME Elongation factor 1-alpha (EF-1-alpha)
Length = 462
Score = 153 bits (386), Expect = 1e-37
Identities = 72/76 (94%), Positives = 76/76 (100%)
Frame = +3
Query: 3 GSFKYAWVLDKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADC 182
GSFKYAWVLDKLKAERERGITIDIALWKFET+K+YVT+IDAPGHRDFIKNMITGTSQADC
Sbjct: 52 GSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADC 111
Query: 183 AVLVVAAGTGEFEAGI 230
AVL+VAAGTGEFEAGI
Sbjct: 112 AVLIVAAGTGEFEAGI 127
>sp|Q26487|EF1A_SPOFR Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 152 bits (385), Expect = 2e-37
Identities = 72/76 (94%), Positives = 75/76 (98%)
Frame = +3
Query: 3 GSFKYAWVLDKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADC 182
GSFKYAWVLDKLKAERERGITIDIALWKFET K+YVT+IDAPGHRDFIKNMITGTSQADC
Sbjct: 38 GSFKYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADC 97
Query: 183 AVLVVAAGTGEFEAGI 230
AVL+VAAGTGEFEAGI
Sbjct: 98 AVLIVAAGTGEFEAGI 113
>sp|P84316|EF1A_HELZE Elongation factor 1-alpha (EF-1-alpha)
sp|P84315|EF1A_HELVI Elongation factor 1-alpha (EF-1-alpha)
sp|P84318|EF1A_HELGL Elongation factor 1-alpha (EF-1-alpha)
sp|P84320|EF1A_HELDI Elongation factor 1-alpha (EF-1-alpha)
sp|P84317|EF1A_HELAM Elongation factor 1-alpha (EF-1-alpha)
sp|P84319|EF1A_HELAL Elongation factor 1-alpha (EF-1-alpha)
sp|P84322|EF1A_ANIIF Elongation factor 1-alpha (EF-1-alpha)
sp|P84321|EF1A_ADIBE Elongation factor 1-alpha (EF-1-alpha)
Length = 413
Score = 152 bits (385), Expect = 2e-37
Identities = 72/76 (94%), Positives = 75/76 (98%)
Frame = +3
Query: 3 GSFKYAWVLDKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADC 182
GSFKYAWVLDKLKAERERGITIDIALWKFET K+YVT+IDAPGHRDFIKNMITGTSQADC
Sbjct: 38 GSFKYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADC 97
Query: 183 AVLVVAAGTGEFEAGI 230
AVL+VAAGTGEFEAGI
Sbjct: 98 AVLIVAAGTGEFEAGI 113
>sp|P27634|EF1A_RHYAM Elongation factor 1-alpha (EF-1-alpha)
Length = 412
Score = 152 bits (385), Expect = 2e-37
Identities = 72/76 (94%), Positives = 75/76 (98%)
Frame = +3
Query: 3 GSFKYAWVLDKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADC 182
GSFKYAWVLDKLKAERERGITIDIALWKFET K+YVT+IDAPGHRDFIKNMITGTSQADC
Sbjct: 1 GSFKYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADC 60
Query: 183 AVLVVAAGTGEFEAGI 230
AVL+VAAGTGEFEAGI
Sbjct: 61 AVLIVAAGTGEFEAGI 76
>sp|P08736|EF11_DROME Elongation factor 1-alpha (EF-1-alpha) (50 kDa female-specific
protein)
Length = 463
Score = 152 bits (385), Expect = 2e-37
Identities = 72/76 (94%), Positives = 75/76 (98%)
Frame = +3
Query: 3 GSFKYAWVLDKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADC 182
GSFKYAWVLDKLKAERERGITIDIALWKFET K+YVT+IDAPGHRDFIKNMITGTSQADC
Sbjct: 52 GSFKYAWVLDKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADC 111
Query: 183 AVLVVAAGTGEFEAGI 230
AVL+VAAGTGEFEAGI
Sbjct: 112 AVLIVAAGTGEFEAGI 127
>sp|Q01520|EF1A_PODAN Elongation factor 1-alpha (EF-1-alpha)
Length = 460
Score = 152 bits (383), Expect = 3e-37
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +3
Query: 3 GSFKYAWVLDKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADC 182
GSFKYAWVLDKLKAERERGITIDIALWKFET K+YVTVIDAPGHRDFIKNMITGTSQADC
Sbjct: 53 GSFKYAWVLDKLKAERERGITIDIALWKFETPKYYVTVIDAPGHRDFIKNMITGTSQADC 112
Query: 183 AVLVVAAGTGEFEAGI 230
A+L++AAGTGEFEAGI
Sbjct: 113 AILIIAAGTGEFEAGI 128
>sp|P34825|EF1A_TRIRE Elongation factor 1-alpha (EF-1-alpha)
Length = 460
Score = 152 bits (383), Expect = 3e-37
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +3
Query: 3 GSFKYAWVLDKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADC 182
GSFKYAWVLDKLKAERERGITIDIALWKFET K+YVTVIDAPGHRDFIKNMITGTSQADC
Sbjct: 53 GSFKYAWVLDKLKAERERGITIDIALWKFETPKYYVTVIDAPGHRDFIKNMITGTSQADC 112
Query: 183 AVLVVAAGTGEFEAGI 230
A+L++AAGTGEFEAGI
Sbjct: 113 AILIIAAGTGEFEAGI 128
>sp|Q09069|EF1A_SORMA Elongation factor 1-alpha (EF-1-alpha)
Length = 460
Score = 152 bits (383), Expect = 3e-37
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +3
Query: 3 GSFKYAWVLDKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADC 182
GSFKYAWVLDKLKAERERGITIDIALWKFET K+YVTVIDAPGHRDFIKNMITGTSQADC
Sbjct: 53 GSFKYAWVLDKLKAERERGITIDIALWKFETPKYYVTVIDAPGHRDFIKNMITGTSQADC 112
Query: 183 AVLVVAAGTGEFEAGI 230
A+L++AAGTGEFEAGI
Sbjct: 113 AILIIAAGTGEFEAGI 128
>sp|Q01765|EF1A_PODCU Elongation factor 1-alpha (EF-1-alpha)
Length = 461
Score = 152 bits (383), Expect = 3e-37
Identities = 71/76 (93%), Positives = 75/76 (98%)
Frame = +3
Query: 3 GSFKYAWVLDKLKAERERGITIDIALWKFETTKFYVTVIDAPGHRDFIKNMITGTSQADC 182
GSFKYAWVLDKLKAERERGITIDIALWKFET K+YVTVIDAPGHRDFIKNMITGTSQADC
Sbjct: 53 GSFKYAWVLDKLKAERERGITIDIALWKFETPKYYVTVIDAPGHRDFIKNMITGTSQADC 112
Query: 183 AVLVVAAGTGEFEAGI 230
A+L++AAGTGEFEAGI
Sbjct: 113 AILIIAAGTGEFEAGI 128
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,023,459
Number of Sequences: 369166
Number of extensions: 333441
Number of successful extensions: 2291
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2069
length of database: 68,354,980
effective HSP length: 47
effective length of database: 59,672,435
effective search space used: 1730500615
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)